RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 ZNF428Q96B54 188 aa14.14□□□□□ -0.15
HDAC4-210ENST00000493582 FEZ1Q99689 392 aa14.14□□□□□ -0.15
HDAC4-210ENST00000493582 PALD1Q9ULE6 856 aa14.14□□□□□ -0.15
HDAC4-210ENST00000493582 NCBP1Q09161 790 aaKnown RBP14.14□□□□□ -0.15
HDAC4-210ENST00000493582 PPRC1Q5VV67 1664 aaKnown RBP14.13□□□□□ -0.15
HDAC4-210ENST00000493582 SPAG9O60271 1321 aaKnown RBP14.13□□□□□ -0.15
HDAC4-210ENST00000493582 PRKAR2BP31323 418 aa14.13□□□□□ -0.15
HDAC4-210ENST00000493582 CUL4AQ13619 759 aa14.13□□□□□ -0.15
HDAC4-210ENST00000493582 CCDC183Q5T5S1 534 aa14.13□□□□□ -0.15
HDAC4-210ENST00000493582 KIF3BO15066 747 aa14.13□□□□□ -0.15
HDAC4-210ENST00000493582 MAPK8IP2Q13387 824 aaPredicted RBP14.13□□□□□ -0.15
HDAC4-210ENST00000493582 TAF3Q5VWG9 929 aa14.13□□□□□ -0.15
HDAC4-210ENST00000493582 UPF3BQ9BZI7 483 aaKnown RBP14.13□□□□□ -0.15
HDAC4-210ENST00000493582 CNPY2Q9Y2B0 182 aa14.13□□□□□ -0.15
HDAC4-210ENST00000493582 PTCH1Q13635 1447 aa14.12□□□□□ -0.15
HDAC4-210ENST00000493582 MX1P20591 662 aa14.12□□□□□ -0.15
HDAC4-210ENST00000493582 GIMAP6Q6P9H5 292 aa14.12□□□□□ -0.15
HDAC4-210ENST00000493582 PHACTR3Q96KR7 559 aa14.12□□□□□ -0.15
HDAC4-210ENST00000493582 ANKRD36BQ8N2N9 1353 aa14.12□□□□□ -0.15
HDAC4-210ENST00000493582 FBLN1P23142 703 aa14.12□□□□□ -0.15
HDAC4-210ENST00000493582 TWISTNBQ3B726 338 aaPredicted RBP14.12□□□□□ -0.15
HDAC4-210ENST00000493582 C8orf58Q8NAV2 365 aa14.12□□□□□ -0.15
HDAC4-210ENST00000493582 CTNNA3Q9UI47 895 aa14.12□□□□□ -0.15
HDAC4-210ENST00000493582 TSHZ3Q63HK5 1081 aa14.11□□□□□ -0.15
HDAC4-210ENST00000493582 SENP3Q9H4L4 574 aaPredicted RBP14.11□□□□□ -0.15
HDAC4-210ENST00000493582 MBIPQ9NS73 344 aa14.11□□□□□ -0.15
HDAC4-210ENST00000493582 EFCAB2Q5VUJ9 269 aa14.11□□□□□ -0.15
HDAC4-210ENST00000493582 SRCIN1Q9C0H9 1055 aa14.11□□□□□ -0.15
HDAC4-210ENST00000493582 MYOM2P54296 1465 aa14.11□□□□□ -0.15
HDAC4-210ENST00000493582 MYO3AQ8NEV4 1616 aa14.11□□□□□ -0.15
HDAC4-210ENST00000493582 HMOX1P09601 288 aa14.1□□□□□ -0.15
HDAC4-210ENST00000493582 SLFN14P0C7P3 912 aa14.1□□□□□ -0.15
HDAC4-210ENST00000493582 KCNJ4P48050 445 aa14.1□□□□□ -0.15
HDAC4-210ENST00000493582 PLCD3Q8N3E9 789 aa14.1□□□□□ -0.15
HDAC4-210ENST00000493582 REREQ9P2R6 1566 aa14.1□□□□□ -0.15
HDAC4-210ENST00000493582 NSD2O96028 1365 aa14.1□□□□□ -0.15
HDAC4-210ENST00000493582 ANKRD44Q8N8A2 993 aa14.1□□□□□ -0.15
HDAC4-210ENST00000493582 INTS4Q96HW7 963 aaKnown RBP14.1□□□□□ -0.15
HDAC4-210ENST00000493582 API5Q9BZZ5 524 aaKnown RBP14.1□□□□□ -0.15
HDAC4-210ENST00000493582 EVC2Q86UK5 1308 aa14.1□□□□□ -0.15
HDAC4-210ENST00000493582 FYB1O15117 783 aa14.1□□□□□ -0.15
HDAC4-210ENST00000493582 MCM2P49736 904 aa14.1□□□□□ -0.15
HDAC4-210ENST00000493582 TET3O43151 1660 aa14.09□□□□□ -0.15
HDAC4-210ENST00000493582 KRT24Q2M2I5 525 aa14.09□□□□□ -0.15
HDAC4-210ENST00000493582 NUTM2DQ5VT03 806 aaPredicted RBP14.09□□□□□ -0.15
HDAC4-210ENST00000493582 C16orf45Q96MC5 204 aaPredicted RBP14.09□□□□□ -0.15
HDAC4-210ENST00000493582 C14orf93Q9H972 538 aaKnown RBP14.09□□□□□ -0.15
HDAC4-210ENST00000493582 DEPDC5O75140 1603 aa14.09□□□□□ -0.15
HDAC4-210ENST00000493582 CEP85Q6P2H3 762 aa14.09□□□□□ -0.15
HDAC4-210ENST00000493582 COL3A1P02461 1466 aaPredicted RBP14.09□□□□□ -0.15
HDAC4-210ENST00000493582 TCHHQ07283 1943 aa14.09□□□□□ -0.15
HDAC4-210ENST00000493582 WDR33Q9C0J8 1336 aaKnown RBP14.09□□□□□ -0.15
HDAC4-210ENST00000493582 ABCC1P33527 1531 aa14.08□□□□□ -0.15
HDAC4-210ENST00000493582 DTNBO60941 627 aa14.08□□□□□ -0.15
HDAC4-210ENST00000493582 FCHSD2O94868 740 aa14.08□□□□□ -0.15
HDAC4-210ENST00000493582 CDK11BP21127 795 aaKnown RBP14.08□□□□□ -0.15
HDAC4-210ENST00000493582 PTGS1P23219 599 aa14.08□□□□□ -0.15
HDAC4-210ENST00000493582 FIBPO43427 364 aa14.08□□□□□ -0.16
HDAC4-210ENST00000493582 IRX5P78411 483 aaPredicted RBP14.08□□□□□ -0.16
HDAC4-210ENST00000493582 ANO2Q9NQ90 1003 aa14.08□□□□□ -0.16
HDAC4-210ENST00000493582 DDX41Q9UJV9 622 aaKnown RBP14.08□□□□□ -0.16
HDAC4-210ENST00000493582 KNDC1Q76NI1 1749 aa14.07□□□□□ -0.16
HDAC4-210ENST00000493582 IFT172Q9UG01 1749 aa14.07□□□□□ -0.16
HDAC4-210ENST00000493582 A0A1W2PP64 1363 aa14.07□□□□□ -0.16
HDAC4-210ENST00000493582 GABPB1Q06547 395 aaPredicted RBP14.07□□□□□ -0.16
HDAC4-210ENST00000493582 GNAI1P63096 354 aa14.07□□□□□ -0.16
HDAC4-210ENST00000493582 LRMPQ12912 555 aa14.07□□□□□ -0.16
HDAC4-210ENST00000493582 LARP6Q9BRS8 491 aaKnown RBP14.07□□□□□ -0.16
HDAC4-210ENST00000493582 NEURL4Q96JN8 1562 aa14.07□□□□□ -0.16
HDAC4-210ENST00000493582 USP32Q8NFA0 1604 aa14.07□□□□□ -0.16
HDAC4-210ENST00000493582 PDE1AP54750 535 aa14.06□□□□□ -0.16
HDAC4-210ENST00000493582 SRPK2P78362 688 aaKnown RBP14.06□□□□□ -0.16
HDAC4-210ENST00000493582 RPAP2Q8IXW5 612 aaPredicted RBP14.06□□□□□ -0.16
HDAC4-210ENST00000493582 FUCA2Q9BTY2 467 aa14.06□□□□□ -0.16
HDAC4-210ENST00000493582 QRICH2Q9H0J4 1663 aa14.06□□□□□ -0.16
HDAC4-210ENST00000493582 UBE2HP62256 183 aa14.06□□□□□ -0.16
HDAC4-210ENST00000493582 ESYT1Q9BSJ8 1104 aa14.06□□□□□ -0.16
HDAC4-210ENST00000493582 ZC3H13Q5T200 1668 aaKnown RBP14.05□□□□□ -0.16
HDAC4-210ENST00000493582 TERF2Q15554 542 aa14.05□□□□□ -0.16
HDAC4-210ENST00000493582 NFE2L2Q16236 605 aa14.05□□□□□ -0.16
HDAC4-210ENST00000493582 IPO4Q8TEX9 1081 aaKnown RBP14.05□□□□□ -0.16
HDAC4-210ENST00000493582 MEIS3Q99687 375 aa14.05□□□□□ -0.16
HDAC4-210ENST00000493582 PLCH2O75038 1416 aa14.05□□□□□ -0.16
HDAC4-210ENST00000493582 GOLGA6L6A8MZA4 724 aa14.05□□□□□ -0.16
HDAC4-210ENST00000493582 IFT57Q9NWB7 429 aa14.05□□□□□ -0.16
HDAC4-210ENST00000493582 ATP10DQ9P241 1426 aa14.05□□□□□ -0.16
HDAC4-210ENST00000493582 FAM83GA6ND36 823 aa14.04□□□□□ -0.16
HDAC4-210ENST00000493582 ERICH4A6NGS2 130 aa14.04□□□□□ -0.16
HDAC4-210ENST00000493582 MCCP23508 829 aa14.04□□□□□ -0.16
HDAC4-210ENST00000493582 CCDC186Q7Z3E2 898 aa14.04□□□□□ -0.16
HDAC4-210ENST00000493582 TMEM87AQ8NBN3 555 aa14.04□□□□□ -0.16
HDAC4-210ENST00000493582 TPM3P06753 285 aa14.04□□□□□ -0.16
HDAC4-210ENST00000493582 TNNT1P13805 278 aa14.04□□□□□ -0.16
HDAC4-210ENST00000493582 KIF18AQ8NI77 898 aa14.04□□□□□ -0.16
HDAC4-210ENST00000493582 RILPL2Q969X0 211 aa14.04□□□□□ -0.16
HDAC4-210ENST00000493582 NRBP1Q9UHY1 535 aa14.04□□□□□ -0.16
HDAC4-210ENST00000493582 MORC2Q9Y6X9 1032 aaPredicted RBP14.04□□□□□ -0.16
HDAC4-210ENST00000493582 KIF1BO60333 1816 aa14.04□□□□□ -0.16
HDAC4-210ENST00000493582 ZFYVE16Q7Z3T8 1539 aa14.04□□□□□ -0.16
HDAC4-210ENST00000493582 MROH2AA6NES4 1674 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms