RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 INTS6LQ5JSJ4 861 aaKnown RBP4.44□□□□□ -1.7
HMGB1-208ENST00000490788 PPP1R26Q5T8A7 1209 aaPredicted RBP4.44□□□□□ -1.7
HMGB1-208ENST00000490788 KANK3Q6NY19 840 aa4.44□□□□□ -1.7
HMGB1-208ENST00000490788 POM121Q96HA1 1249 aa4.44□□□□□ -1.7
HMGB1-208ENST00000490788 KLF16Q9BXK1 252 aaPredicted RBP4.44□□□□□ -1.7
HMGB1-208ENST00000490788 GIGYF1O75420 1035 aaPredicted RBP4.43□□□□□ -1.7
HMGB1-208ENST00000490788 TIMP2P16035 220 aa4.43□□□□□ -1.7
HMGB1-208ENST00000490788 IRF5Q13568 498 aa4.43□□□□□ -1.7
HMGB1-208ENST00000490788 PROSER2Q86WR7 435 aaPredicted RBP4.43□□□□□ -1.7
HMGB1-208ENST00000490788 CLUAP1Q96AJ1 413 aa4.43□□□□□ -1.7
HMGB1-208ENST00000490788 ITPKCQ96DU7 683 aa4.43□□□□□ -1.7
HMGB1-208ENST00000490788 GOLGA2P5Q9HBQ8 144 aa4.43□□□□□ -1.7
HMGB1-208ENST00000490788 ERVH48-1M5A8F1 160 aa4.42□□□□□ -1.7
HMGB1-208ENST00000490788 MYCP01106 439 aaPredicted RBP4.42□□□□□ -1.7
HMGB1-208ENST00000490788 RNF135Q8IUD6 432 aa4.42□□□□□ -1.7
HMGB1-208ENST00000490788 PURBQ96QR8 312 aaKnown RBP4.42□□□□□ -1.7
HMGB1-208ENST00000490788 ZFAND3Q9H8U3 227 aa4.42□□□□□ -1.7
HMGB1-208ENST00000490788 CEP126Q9P2H0 1117 aa4.42□□□□□ -1.7
HMGB1-208ENST00000490788 PCDHB11Q9Y5F2 797 aa4.42□□□□□ -1.7
HMGB1-208ENST00000490788 ESPNB1AK53 854 aa4.41□□□□□ -1.7
HMGB1-208ENST00000490788 MAN1A2O60476 641 aa4.41□□□□□ -1.7
HMGB1-208ENST00000490788 GPR37L1O60883 481 aa4.41□□□□□ -1.7
HMGB1-208ENST00000490788 BMP2P12643 396 aa4.41□□□□□ -1.7
HMGB1-208ENST00000490788 TSEN34Q9BSV6 310 aaKnown RBP4.41□□□□□ -1.7
HMGB1-208ENST00000490788 CYLDQ9NQC7 956 aa4.41□□□□□ -1.7
HMGB1-208ENST00000490788 TMPRSS4Q9NRS4 437 aa4.41□□□□□ -1.7
HMGB1-208ENST00000490788 A6NJR5 290 aa4.4□□□□□ -1.71
HMGB1-208ENST00000490788 MSTNO14793 375 aa4.4□□□□□ -1.71
HMGB1-208ENST00000490788 C6orf118Q5T5N4 469 aa4.4□□□□□ -1.71
HMGB1-208ENST00000490788 CC2D2BQ6DHV5 1058 aa4.4□□□□□ -1.71
HMGB1-208ENST00000490788 ERICH6Q7L0X2 663 aa4.4□□□□□ -1.71
HMGB1-208ENST00000490788 ZNF784Q8NCA9 323 aaPredicted RBP4.4□□□□□ -1.71
HMGB1-208ENST00000490788 SIRT1Q96EB6 747 aa4.4□□□□□ -1.71
HMGB1-208ENST00000490788 DOLKQ9UPQ8 538 aa4.4□□□□□ -1.71
HMGB1-208ENST00000490788 K7ELQ4 463 aaPredicted RBP4.39□□□□□ -1.71
HMGB1-208ENST00000490788 PPFIA3O75145 1194 aa4.39□□□□□ -1.71
HMGB1-208ENST00000490788 RELBQ01201 579 aa4.39□□□□□ -1.71
HMGB1-208ENST00000490788 USP4Q13107 963 aa4.39□□□□□ -1.71
HMGB1-208ENST00000490788 CBLBQ13191 982 aa4.39□□□□□ -1.71
HMGB1-208ENST00000490788 OXLD1Q5BKU9 147 aa4.39□□□□□ -1.71
HMGB1-208ENST00000490788 CYP2U1Q7Z449 544 aa4.39□□□□□ -1.71
HMGB1-208ENST00000490788 C14orf37Q86TY3 774 aa4.39□□□□□ -1.71
HMGB1-208ENST00000490788 LINC00528Q8N1L1 170 aa4.39□□□□□ -1.71
HMGB1-208ENST00000490788 MEIOBQ8N635 442 aa4.39□□□□□ -1.71
HMGB1-208ENST00000490788 CALR3Q96L12 384 aaKnown RBP4.39□□□□□ -1.71
HMGB1-208ENST00000490788 ADAMTS8Q9UP79 889 aa4.39□□□□□ -1.71
HMGB1-208ENST00000490788 ATP5J2-PTCD1G3V325 749 aa4.38□□□□□ -1.71
HMGB1-208ENST00000490788 SKIP12755 728 aa4.38□□□□□ -1.71
HMGB1-208ENST00000490788 MAP7D1Q3KQU3 841 aa4.38□□□□□ -1.71
HMGB1-208ENST00000490788 HDGFL1Q5TGJ6 251 aa4.38□□□□□ -1.71
HMGB1-208ENST00000490788 Q6ZVU0 165 aa4.38□□□□□ -1.71
HMGB1-208ENST00000490788 POLMQ9NP87 494 aaPredicted RBP4.38□□□□□ -1.71
HMGB1-208ENST00000490788 SOBPA7XYQ1 873 aa4.37□□□□□ -1.71
HMGB1-208ENST00000490788 POM121CA8CG34 1229 aa4.37□□□□□ -1.71
HMGB1-208ENST00000490788 ADH1AP07327 375 aa4.37□□□□□ -1.71
HMGB1-208ENST00000490788 EML3Q32P44 896 aa4.37□□□□□ -1.71
HMGB1-208ENST00000490788 PLPP7Q8NBV4 271 aa4.37□□□□□ -1.71
HMGB1-208ENST00000490788 GLMNQ92990 594 aa4.37□□□□□ -1.71
HMGB1-208ENST00000490788 AGBL1Q96MI9 1066 aa4.37□□□□□ -1.71
HMGB1-208ENST00000490788 NLRP3Q96P20 1036 aa4.37□□□□□ -1.71
HMGB1-208ENST00000490788 ZMYND15Q9H091 742 aa4.37□□□□□ -1.71
HMGB1-208ENST00000490788 ALG2Q9H553 416 aa4.37□□□□□ -1.71
HMGB1-208ENST00000490788 ZNF395Q9H8N7 513 aaPredicted RBP4.37□□□□□ -1.71
HMGB1-208ENST00000490788 SOS2Q07890 1332 aaPredicted RBP4.37□□□□□ -1.71
HMGB1-208ENST00000490788 TRAK2O60296 914 aa4.36□□□□□ -1.71
HMGB1-208ENST00000490788 GTF2E1P29083 439 aaPredicted RBP4.36□□□□□ -1.71
HMGB1-208ENST00000490788 ERVK-9P63128 1117 aa4.36□□□□□ -1.71
HMGB1-208ENST00000490788 CCDC85AQ96PX6 553 aaPredicted RBP4.36□□□□□ -1.71
HMGB1-208ENST00000490788 ZNF777Q9ULD5 760 aaPredicted RBP4.36□□□□□ -1.71
HMGB1-208ENST00000490788 TTLL8A6PVC2 850 aa4.35□□□□□ -1.71
HMGB1-208ENST00000490788 MEN1O00255 615 aa4.35□□□□□ -1.71
HMGB1-208ENST00000490788 LZTS3O60299 673 aaPredicted RBP4.35□□□□□ -1.71
HMGB1-208ENST00000490788 LILRA1O75019 489 aa4.35□□□□□ -1.71
HMGB1-208ENST00000490788 PTGIRP43119 386 aa4.35□□□□□ -1.71
HMGB1-208ENST00000490788 PSME1Q06323 249 aa4.35□□□□□ -1.71
HMGB1-208ENST00000490788 ZNF800Q2TB10 664 aaPredicted RBP eCLIP4.35□□□□□ -1.71
HMGB1-208ENST00000490788 ESCO1Q5FWF5 840 aa4.35□□□□□ -1.71
HMGB1-208ENST00000490788 FNBP4Q8N3X1 1017 aaPredicted RBP4.35□□□□□ -1.71
HMGB1-208ENST00000490788 NFATC2IPQ8NCF5 419 aa4.35□□□□□ -1.71
HMGB1-208ENST00000490788 NOD1Q9Y239 953 aa4.35□□□□□ -1.71
HMGB1-208ENST00000490788 RBM19Q9Y4C8 960 aaKnown RBP4.35□□□□□ -1.71
HMGB1-208ENST00000490788 FIGNL2A6NMB9 653 aa4.34□□□□□ -1.71
HMGB1-208ENST00000490788 PIK3CDO00329 1044 aa4.34□□□□□ -1.71
HMGB1-208ENST00000490788 SPINT1O43278 529 aa4.34□□□□□ -1.71
HMGB1-208ENST00000490788 GNRH1P01148 92 aa4.34□□□□□ -1.71
HMGB1-208ENST00000490788 IRS1P35568 1242 aa4.34□□□□□ -1.71
HMGB1-208ENST00000490788 ADD1P35611 737 aaKnown RBP4.34□□□□□ -1.71
HMGB1-208ENST00000490788 SCTRP47872 440 aa4.34□□□□□ -1.71
HMGB1-208ENST00000490788 SLC27A3Q5K4L6 730 aa4.34□□□□□ -1.71
HMGB1-208ENST00000490788 PHTF2Q8N3S3 785 aa4.34□□□□□ -1.71
HMGB1-208ENST00000490788 NANOS1Q8WY41 292 aaKnown RBP4.34□□□□□ -1.71
HMGB1-208ENST00000490788 INSM2Q96T92 566 aaPredicted RBP4.34□□□□□ -1.71
HMGB1-208ENST00000490788 SPOCK3Q9BQ16 436 aa4.34□□□□□ -1.71
HMGB1-208ENST00000490788 CDCA7Q9BWT1 371 aaPredicted RBP4.34□□□□□ -1.71
HMGB1-208ENST00000490788 ARHGEF10LQ9HCE6 1279 aa4.34□□□□□ -1.71
HMGB1-208ENST00000490788 DNMT3LQ9UJW3 386 aa4.34□□□□□ -1.71
HMGB1-208ENST00000490788 A0A1W2PRU2 124 aa4.33□□□□□ -1.72
HMGB1-208ENST00000490788 USP17L5A8MUK1 530 aa4.33□□□□□ -1.72
HMGB1-208ENST00000490788 ATP9BO43861 1147 aa4.33□□□□□ -1.72
HMGB1-208ENST00000490788 ATP1A2P50993 1020 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms