RNA–Protein interactions for RNA: ENST00000490690.1

SHROOM3-209, Transcript of shroom family member 3, humanhuman

TSL 4

Gene SHROOM3, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-209ENST00000490690 PDE3BQ13370 1112 aa26.41■■□□□ 1.82
SHROOM3-209ENST00000490690 THSD7AQ9UPZ6 1657 aa26.41■■□□□ 1.82
SHROOM3-209ENST00000490690 PLEKHO1Q53GL0 409 aaPredicted RBP26.4■■□□□ 1.82
SHROOM3-209ENST00000490690 TNS2Q63HR2 1409 aa26.39■■□□□ 1.82
SHROOM3-209ENST00000490690 PARP4Q9UKK3 1724 aaKnown RBP26.39■■□□□ 1.82
SHROOM3-209ENST00000490690 ZCRB1Q8TBF4 217 aaKnown RBP26.39■■□□□ 1.82
SHROOM3-209ENST00000490690 RGS12O14924 1447 aa26.39■■□□□ 1.81
SHROOM3-209ENST00000490690 PCDH11XQ9BZA7 1347 aa26.38■■□□□ 1.81
SHROOM3-209ENST00000490690 PCDH11YQ9BZA8 1340 aa26.38■■□□□ 1.81
SHROOM3-209ENST00000490690 HMOX1P09601 288 aa26.37■■□□□ 1.81
SHROOM3-209ENST00000490690 MEGF6O75095 1541 aa26.37■■□□□ 1.81
SHROOM3-209ENST00000490690 WNK3Q9BYP7 1800 aa26.37■■□□□ 1.81
SHROOM3-209ENST00000490690 AEBP1Q8IUX7 1158 aa26.36■■□□□ 1.81
SHROOM3-209ENST00000490690 RGPD2P0DJD1 1756 aa26.35■■□□□ 1.81
SHROOM3-209ENST00000490690 KRT27Q7Z3Y8 459 aa26.35■■□□□ 1.81
SHROOM3-209ENST00000490690 RSPH6AQ9H0K4 717 aa26.35■■□□□ 1.81
SHROOM3-209ENST00000490690 MAPK8IP3Q9UPT6 1336 aa26.34■■□□□ 1.81
SHROOM3-209ENST00000490690 GAS2L2Q8NHY3 880 aa26.33■■□□□ 1.81
SHROOM3-209ENST00000490690 HSP90AB1P08238 724 aaKnown RBP26.32■■□□□ 1.8
SHROOM3-209ENST00000490690 PRKAR2BP31323 418 aa26.32■■□□□ 1.8
SHROOM3-209ENST00000490690 PNISRQ8TF01 805 aaKnown RBP26.31■■□□□ 1.8
SHROOM3-209ENST00000490690 LRRC37A3O60309 1634 aa26.31■■□□□ 1.8
SHROOM3-209ENST00000490690 C1orf141Q5JVX7 400 aa26.3■■□□□ 1.8
SHROOM3-209ENST00000490690 IFNL2Q8IZJ0 200 aa26.3■■□□□ 1.8
SHROOM3-209ENST00000490690 FAM196AQ6ZSG2 479 aa26.28■■□□□ 1.8
SHROOM3-209ENST00000490690 MIER1Q8N108 512 aa26.28■■□□□ 1.8
SHROOM3-209ENST00000490690 BCL9O00512 1426 aa26.28■■□□□ 1.8
SHROOM3-209ENST00000490690 ADAMTS8Q9UP79 889 aa26.27■■□□□ 1.8
SHROOM3-209ENST00000490690 PKD1L3Q7Z443 1732 aa26.27■■□□□ 1.8
SHROOM3-209ENST00000490690 ZNF530Q6P9A1 599 aaPredicted RBP26.26■■□□□ 1.79
SHROOM3-209ENST00000490690 DDX54Q8TDD1 881 aaKnown RBP26.26■■□□□ 1.79
SHROOM3-209ENST00000490690 RUNDC1Q96C34 613 aa26.26■■□□□ 1.79
SHROOM3-209ENST00000490690 CCDC184Q52MB2 194 aa26.25■■□□□ 1.79
SHROOM3-209ENST00000490690 AKAP4Q5JQC9 854 aa26.25■■□□□ 1.79
SHROOM3-209ENST00000490690 PLEKHF1Q96S99 279 aa26.23■■□□□ 1.79
SHROOM3-209ENST00000490690 PHKG2P15735 406 aa26.22■■□□□ 1.79
SHROOM3-209ENST00000490690 MARCH10Q8NA82 808 aaPredicted RBP26.22■■□□□ 1.79
SHROOM3-209ENST00000490690 NKX1-1Q15270 411 aaPredicted RBP26.21■■□□□ 1.79
SHROOM3-209ENST00000490690 MTHFSDQ2M296 383 aaKnown RBP26.21■■□□□ 1.79
SHROOM3-209ENST00000490690 DCAF5Q96JK2 942 aa26.21■■□□□ 1.79
SHROOM3-209ENST00000490690 CYP27B1O15528 508 aa26.2■■□□□ 1.78
SHROOM3-209ENST00000490690 HTATSF1O43719 755 aaKnown RBP26.2■■□□□ 1.78
SHROOM3-209ENST00000490690 LMOD3Q0VAK6 560 aa26.2■■□□□ 1.78
SHROOM3-209ENST00000490690 GNAT3A8MTJ3 354 aa26.19■■□□□ 1.78
SHROOM3-209ENST00000490690 FAM9BQ8IZU0 186 aa26.19■■□□□ 1.78
SHROOM3-209ENST00000490690 NFE2L2Q16236 605 aa26.18■■□□□ 1.78
SHROOM3-209ENST00000490690 RTF1Q92541 710 aaKnown RBP26.18■■□□□ 1.78
SHROOM3-209ENST00000490690 PHACTR3Q96KR7 559 aa26.18■■□□□ 1.78
SHROOM3-209ENST00000490690 MAP3K5Q99683 1374 aa26.18■■□□□ 1.78
SHROOM3-209ENST00000490690 NGEFQ8N5V2 710 aa26.17■■□□□ 1.78
SHROOM3-209ENST00000490690 NCBP3Q53F19 620 aaKnown RBP26.16■■□□□ 1.78
SHROOM3-209ENST00000490690 CCDC125Q86Z20 511 aa26.15■■□□□ 1.78
SHROOM3-209ENST00000490690 BRWD3Q6RI45 1802 aa26.15■■□□□ 1.78
SHROOM3-209ENST00000490690 ERVV-2B6SEH9 535 aa26.14■■□□□ 1.78
SHROOM3-209ENST00000490690 CCDC146Q8IYE0 955 aa26.13■■□□□ 1.77
SHROOM3-209ENST00000490690 SHANK3Q9BYB0 1731 aa26.12■■□□□ 1.77
SHROOM3-209ENST00000490690 TMPOP42166 694 aaKnown RBP26.12■■□□□ 1.77
SHROOM3-209ENST00000490690 SF3B2Q13435 895 aaKnown RBP26.11■■□□□ 1.77
SHROOM3-209ENST00000490690 RIPK4P57078 832 aa26.1■■□□□ 1.77
SHROOM3-209ENST00000490690 BCL11BQ9C0K0 894 aaPredicted RBP26.1■■□□□ 1.77
SHROOM3-209ENST00000490690 MPRIPQ6WCQ1 1025 aa26.08■■□□□ 1.77
SHROOM3-209ENST00000490690 APAF1O14727 1248 aa26.07■■□□□ 1.76
SHROOM3-209ENST00000490690 RNMTO43148 476 aaKnown RBP26.07■■□□□ 1.76
SHROOM3-209ENST00000490690 HMGB2P26583 209 aaKnown RBP26.07■■□□□ 1.76
SHROOM3-209ENST00000490690 CABP4P57796 275 aa26.07■■□□□ 1.76
SHROOM3-209ENST00000490690 CALD1Q05682 793 aaKnown RBP26.07■■□□□ 1.76
SHROOM3-209ENST00000490690 TEFQ10587 303 aa26.07■■□□□ 1.76
SHROOM3-209ENST00000490690 FAM182BQ5T319 152 aa26.07■■□□□ 1.76
SHROOM3-209ENST00000490690 TMOD3Q9NYL9 352 aa26.07■■□□□ 1.76
SHROOM3-209ENST00000490690 ILDR2Q71H61 639 aa26.06■■□□□ 1.76
SHROOM3-209ENST00000490690 SYTL4Q96C24 671 aaPredicted RBP26.06■■□□□ 1.76
SHROOM3-209ENST00000490690 CEMIPQ8WUJ3 1361 aa26.05■■□□□ 1.76
SHROOM3-209ENST00000490690 KDM6AO15550 1401 aaPredicted RBP26.05■■□□□ 1.76
SHROOM3-209ENST00000490690 PRIM1P49642 420 aaKnown RBP26.04■■□□□ 1.76
SHROOM3-209ENST00000490690 CCDC27Q2M243 656 aa26.04■■□□□ 1.76
SHROOM3-209ENST00000490690 TRIM37O94972 964 aa26.03■■□□□ 1.76
SHROOM3-209ENST00000490690 ACSBG1Q96GR2 724 aa26.03■■□□□ 1.76
SHROOM3-209ENST00000490690 SLC52A2Q9HAB3 445 aa26.03■■□□□ 1.76
SHROOM3-209ENST00000490690 SMARCC1Q92922 1105 aaPredicted RBP26.02■■□□□ 1.76
SHROOM3-209ENST00000490690 NHSQ6T4R5 1651 aa26.02■■□□□ 1.76
SHROOM3-209ENST00000490690 MRC1P22897 1456 aa26.01■■□□□ 1.75
SHROOM3-209ENST00000490690 NEUROD2Q15784 382 aa26.01■■□□□ 1.75
SHROOM3-209ENST00000490690 ADAMTS7Q9UKP4 1686 aa26■■□□□ 1.75
SHROOM3-209ENST00000490690 IL17REQ8NFR9 667 aa26■■□□□ 1.75
SHROOM3-209ENST00000490690 BAG6P46379 1132 aa25.99■■□□□ 1.75
SHROOM3-209ENST00000490690 LGR6Q9HBX8 967 aa25.99■■□□□ 1.75
SHROOM3-209ENST00000490690 BABAM1Q9NWV8 329 aa25.99■■□□□ 1.75
SHROOM3-209ENST00000490690 RRP7AQ9Y3A4 280 aaKnown RBP25.99■■□□□ 1.75
SHROOM3-209ENST00000490690 DOT1LQ8TEK3 1739 aa25.99■■□□□ 1.75
SHROOM3-209ENST00000490690 MCM10Q7L590 875 aa25.97■■□□□ 1.75
SHROOM3-209ENST00000490690 NFATC2IPQ8NCF5 419 aa25.97■■□□□ 1.75
SHROOM3-209ENST00000490690 SCN11AQ9UI33 1791 aa25.97■■□□□ 1.75
SHROOM3-209ENST00000490690 PLSCR1O15162 318 aa25.96■■□□□ 1.75
SHROOM3-209ENST00000490690 KCNQ2O43526 872 aa25.96■■□□□ 1.75
SHROOM3-209ENST00000490690 APBA3O96018 575 aa25.96■■□□□ 1.75
SHROOM3-209ENST00000490690 TAF7Q15545 349 aaPredicted RBP25.96■■□□□ 1.75
SHROOM3-209ENST00000490690 PIGBQ92521 554 aa25.96■■□□□ 1.75
SHROOM3-209ENST00000490690 UPF1Q92900 1129 aaKnown RBP eCLIP25.95■■□□□ 1.74
SHROOM3-209ENST00000490690 SBF2Q86WG5 1849 aa25.95■■□□□ 1.74
SHROOM3-209ENST00000490690 TTC5Q8N0Z6 440 aa25.94■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms