RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 UPP2O95045 317 aa9.39□□□□□ -0.91
HMGB1P38-201ENST00000490557 SCTRP47872 440 aa9.39□□□□□ -0.91
HMGB1P38-201ENST00000490557 ATP1A2P50993 1020 aa9.39□□□□□ -0.91
HMGB1P38-201ENST00000490557 CYP2U1Q7Z449 544 aa9.39□□□□□ -0.91
HMGB1P38-201ENST00000490557 MKRN1Q9UHC7 482 aaKnown RBP9.39□□□□□ -0.91
HMGB1P38-201ENST00000490557 RBM19Q9Y4C8 960 aaKnown RBP9.39□□□□□ -0.91
HMGB1P38-201ENST00000490557 CTC1Q2NKJ3 1217 aa9.38□□□□□ -0.91
HMGB1P38-201ENST00000490557 LARP1Q6PKG0 1096 aaKnown RBP9.38□□□□□ -0.91
HMGB1P38-201ENST00000490557 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.37□□□□□ -0.91
HMGB1P38-201ENST00000490557 AXIN1O15169 862 aa9.37□□□□□ -0.91
HMGB1P38-201ENST00000490557 LILRA1O75019 489 aa9.37□□□□□ -0.91
HMGB1P38-201ENST00000490557 GTF2IP78347 998 aa9.37□□□□□ -0.91
HMGB1P38-201ENST00000490557 CBLBQ13191 982 aa9.37□□□□□ -0.91
HMGB1P38-201ENST00000490557 PBXIP1Q96AQ6 731 aa9.37□□□□□ -0.91
HMGB1P38-201ENST00000490557 KLF16Q9BXK1 252 aaPredicted RBP9.37□□□□□ -0.91
HMGB1P38-201ENST00000490557 ACIN1Q9UKV3 1341 aaKnown RBP9.36□□□□□ -0.91
HMGB1P38-201ENST00000490557 AVPP01185 164 aa9.36□□□□□ -0.91
HMGB1P38-201ENST00000490557 RASA1P20936 1047 aa9.36□□□□□ -0.91
HMGB1P38-201ENST00000490557 CDCA8Q53HL2 280 aa9.36□□□□□ -0.91
HMGB1P38-201ENST00000490557 PPP1R15AO75807 674 aaPredicted RBP9.35□□□□□ -0.91
HMGB1P38-201ENST00000490557 ADH1AP07327 375 aa9.35□□□□□ -0.91
HMGB1P38-201ENST00000490557 Q6ZNB5 142 aa9.35□□□□□ -0.91
HMGB1P38-201ENST00000490557 DNAAF2Q9NVR5 837 aaKnown RBP9.35□□□□□ -0.91
HMGB1P38-201ENST00000490557 ADD1P35611 737 aaKnown RBP9.34□□□□□ -0.91
HMGB1P38-201ENST00000490557 RELBQ01201 579 aa9.34□□□□□ -0.91
HMGB1P38-201ENST00000490557 Q6ZVU0 165 aa9.34□□□□□ -0.91
HMGB1P38-201ENST00000490557 OGFOD1Q8N543 542 aa9.34□□□□□ -0.91
HMGB1P38-201ENST00000490557 ZNF594Q96JF6 807 aaPredicted RBP9.34□□□□□ -0.91
HMGB1P38-201ENST00000490557 TSEN34Q9BSV6 310 aaKnown RBP9.34□□□□□ -0.91
HMGB1P38-201ENST00000490557 OSBPL3Q9H4L5 887 aa9.34□□□□□ -0.91
HMGB1P38-201ENST00000490557 SCARF1Q14162 830 aa9.33□□□□□ -0.92
HMGB1P38-201ENST00000490557 ESCO1Q5FWF5 840 aa9.33□□□□□ -0.92
HMGB1P38-201ENST00000490557 KANK4Q5T7N3 995 aaPredicted RBP9.33□□□□□ -0.92
HMGB1P38-201ENST00000490557 MEIOBQ8N635 442 aa9.33□□□□□ -0.92
HMGB1P38-201ENST00000490557 AGBL1Q96MI9 1066 aa9.33□□□□□ -0.92
HMGB1P38-201ENST00000490557 GNRH1P01148 92 aa9.32□□□□□ -0.92
HMGB1P38-201ENST00000490557 BMP2P12643 396 aa9.32□□□□□ -0.92
HMGB1P38-201ENST00000490557 SMCPP49901 116 aaPredicted RBP9.32□□□□□ -0.92
HMGB1P38-201ENST00000490557 USP17L15C9J2P7 530 aa9.31□□□□□ -0.92
HMGB1P38-201ENST00000490557 USP17L10C9JJH3 530 aa9.31□□□□□ -0.92
HMGB1P38-201ENST00000490557 USP17L13C9JLJ4 530 aa9.31□□□□□ -0.92
HMGB1P38-201ENST00000490557 USP17L12C9JPN9 530 aa9.31□□□□□ -0.92
HMGB1P38-201ENST00000490557 USP17L11C9JVI0 530 aa9.31□□□□□ -0.92
HMGB1P38-201ENST00000490557 USP17L21D6R901 530 aa9.31□□□□□ -0.92
HMGB1P38-201ENST00000490557 USP17L18D6R9N7 530 aa9.31□□□□□ -0.92
HMGB1P38-201ENST00000490557 USP17L22D6RA61 530 aa9.31□□□□□ -0.92
HMGB1P38-201ENST00000490557 USP17L17D6RBQ6 530 aa9.31□□□□□ -0.92
HMGB1P38-201ENST00000490557 USP17L19D6RCP7 530 aa9.31□□□□□ -0.92
HMGB1P38-201ENST00000490557 USP17L20D6RJB6 530 aa9.31□□□□□ -0.92
HMGB1P38-201ENST00000490557 PTGIRP43119 386 aa9.31□□□□□ -0.92
HMGB1P38-201ENST00000490557 USP17L24Q0WX57 530 aa9.31□□□□□ -0.92
HMGB1P38-201ENST00000490557 LINC00528Q8N1L1 170 aa9.31□□□□□ -0.92
HMGB1P38-201ENST00000490557 LARGE2Q8N3Y3 721 aa9.31□□□□□ -0.92
HMGB1P38-201ENST00000490557 TPCN2Q8NHX9 752 aa9.31□□□□□ -0.92
HMGB1P38-201ENST00000490557 NLRP3Q96P20 1036 aa9.31□□□□□ -0.92
HMGB1P38-201ENST00000490557 ARHGEF10LQ9HCE6 1279 aa9.31□□□□□ -0.92
HMGB1P38-201ENST00000490557 FAM196BA6NMK8 535 aa9.3□□□□□ -0.92
HMGB1P38-201ENST00000490557 MEN1O00255 615 aa9.3□□□□□ -0.92
HMGB1P38-201ENST00000490557 ST8SIA5O15466 376 aa9.3□□□□□ -0.92
HMGB1P38-201ENST00000490557 CLDN10P78369 228 aa9.3□□□□□ -0.92
HMGB1P38-201ENST00000490557 C6orf118Q5T5N4 469 aa9.3□□□□□ -0.92
HMGB1P38-201ENST00000490557 MRPL14Q6P1L8 145 aaKnown RBP9.3□□□□□ -0.92
HMGB1P38-201ENST00000490557 CRIPAKQ8N1N5 446 aa9.3□□□□□ -0.92
HMGB1P38-201ENST00000490557 ZNF395Q9H8N7 513 aaPredicted RBP9.3□□□□□ -0.92
HMGB1P38-201ENST00000490557 PCDHGA11Q9Y5H2 935 aa9.3□□□□□ -0.92
HMGB1P38-201ENST00000490557 BMP1P13497 986 aa9.29□□□□□ -0.92
HMGB1P38-201ENST00000490557 CRTC2Q53ET0 693 aaPredicted RBP9.29□□□□□ -0.92
HMGB1P38-201ENST00000490557 CCDC102BQ68D86 513 aa9.29□□□□□ -0.92
HMGB1P38-201ENST00000490557 RAB6BQ9NRW1 208 aa9.29□□□□□ -0.92
HMGB1P38-201ENST00000490557 A0A1W2PRU2 124 aa9.28□□□□□ -0.92
HMGB1P38-201ENST00000490557 CSB-PGBD3P0DP91 1061 aa9.28□□□□□ -0.92
HMGB1P38-201ENST00000490557 GDF10P55107 478 aa9.28□□□□□ -0.92
HMGB1P38-201ENST00000490557 PURBQ96QR8 312 aaKnown RBP9.28□□□□□ -0.92
HMGB1P38-201ENST00000490557 POLMQ9NP87 494 aaPredicted RBP9.28□□□□□ -0.92
HMGB1P38-201ENST00000490557 AAASQ9NRG9 546 aa9.28□□□□□ -0.92
HMGB1P38-201ENST00000490557 NOVA2Q9UNW9 492 aaKnown RBP9.28□□□□□ -0.92
HMGB1P38-201ENST00000490557 BACH1O14867 736 aa9.27□□□□□ -0.93
HMGB1P38-201ENST00000490557 ATG7O95352 703 aa9.27□□□□□ -0.93
HMGB1P38-201ENST00000490557 PTK7Q13308 1070 aa9.27□□□□□ -0.93
HMGB1P38-201ENST00000490557 ANKMY2Q8IV38 441 aa9.27□□□□□ -0.93
HMGB1P38-201ENST00000490557 FAM200AQ8TCP9 573 aa9.27□□□□□ -0.93
HMGB1P38-201ENST00000490557 GTF2E1P29083 439 aaPredicted RBP9.26□□□□□ -0.93
HMGB1P38-201ENST00000490557 SEC13P55735 322 aa9.26□□□□□ -0.93
HMGB1P38-201ENST00000490557 SRPK2P78362 688 aaKnown RBP9.26□□□□□ -0.93
HMGB1P38-201ENST00000490557 DPYDQ12882 1025 aa9.26□□□□□ -0.93
HMGB1P38-201ENST00000490557 SIX5Q8N196 739 aa9.26□□□□□ -0.93
HMGB1P38-201ENST00000490557 ETNK1Q9HBU6 452 aa9.26□□□□□ -0.93
HMGB1P38-201ENST00000490557 ATP13A2Q9NQ11 1180 aa9.26□□□□□ -0.93
HMGB1P38-201ENST00000490557 SERTAD1Q9UHV2 236 aa9.26□□□□□ -0.93
HMGB1P38-201ENST00000490557 KIAA1024Q9UPX6 916 aa9.26□□□□□ -0.93
HMGB1P38-201ENST00000490557 ZBTB7BO15156 539 aaPredicted RBP9.25□□□□□ -0.93
HMGB1P38-201ENST00000490557 INHAP05111 366 aa9.25□□□□□ -0.93
HMGB1P38-201ENST00000490557 CLN3Q13286 438 aa9.25□□□□□ -0.93
HMGB1P38-201ENST00000490557 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.25□□□□□ -0.93
HMGB1P38-201ENST00000490557 CNKSR1Q969H4 720 aa9.25□□□□□ -0.93
HMGB1P38-201ENST00000490557 INSM2Q96T92 566 aaPredicted RBP9.25□□□□□ -0.93
HMGB1P38-201ENST00000490557 ESYT1Q9BSJ8 1104 aa9.25□□□□□ -0.93
HMGB1P38-201ENST00000490557 SPINT1O43278 529 aa9.24□□□□□ -0.93
HMGB1P38-201ENST00000490557 STAU1O95793 577 aaKnown RBP9.24□□□□□ -0.93
HMGB1P38-201ENST00000490557 SCNN1DP51172 638 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms