RNA–Protein interactions for RNA: ENST00000489261.1

ITSN1-231, Transcript of intersectin 1, human

TSL 1 (best)

Gene ITSN1, Length 1,108 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ITSN1-231	ENST00000489261	KIF16B	Q96L93	1317 aa		13.89	□□□□□ -0.19
ITSN1-231	ENST00000489261	DZIP1L	Q8IYY4	767 aa	Known RBP	13.88	□□□□□ -0.19
ITSN1-231	ENST00000489261	ARHGAP45	Q92619	1136 aa		13.88	□□□□□ -0.19
ITSN1-231	ENST00000489261	CLUAP1	Q96AJ1	413 aa		13.88	□□□□□ -0.19
ITSN1-231	ENST00000489261	SMC4	Q9NTJ3	1288 aa		13.88	□□□□□ -0.19
ITSN1-231	ENST00000489261	SLIT2	O94813	1529 aa		13.88	□□□□□ -0.19
ITSN1-231	ENST00000489261	ATRN	O75882	1429 aa		13.88	□□□□□ -0.19
ITSN1-231	ENST00000489261	PIK3C2A	O00443	1686 aa		13.88	□□□□□ -0.19
ITSN1-231	ENST00000489261	IGSF1	Q8N6C5	1336 aa		13.88	□□□□□ -0.19
ITSN1-231	ENST00000489261	BCL9L	Q86UU0	1499 aa		13.87	□□□□□ -0.19
ITSN1-231	ENST00000489261	KDR	P35968	1356 aa		13.87	□□□□□ -0.19
ITSN1-231	ENST00000489261	PHRF1	Q9P1Y6	1649 aa	Known RBP	13.87	□□□□□ -0.19
ITSN1-231	ENST00000489261	RXRB	P28702	533 aa		13.87	□□□□□ -0.19
ITSN1-231	ENST00000489261	HOXC9	P31274	260 aa		13.87	□□□□□ -0.19
ITSN1-231	ENST00000489261	GAS2L2	Q8NHY3	880 aa		13.87	□□□□□ -0.19
ITSN1-231	ENST00000489261	NGLY1	Q96IV0	654 aa		13.87	□□□□□ -0.19
ITSN1-231	ENST00000489261	NRAP	Q86VF7	1730 aa		13.87	□□□□□ -0.19
ITSN1-231	ENST00000489261	VAMP4	O75379	141 aa		13.86	□□□□□ -0.19
ITSN1-231	ENST00000489261	ATF7IP	Q6VMQ6	1270 aa		13.86	□□□□□ -0.19
ITSN1-231	ENST00000489261	SSH1	Q8WYL5	1049 aa		13.86	□□□□□ -0.19
ITSN1-231	ENST00000489261	IP6K1	Q92551	441 aa		13.86	□□□□□ -0.19
ITSN1-231	ENST00000489261	COG6	Q9Y2V7	657 aa		13.86	□□□□□ -0.19
ITSN1-231	ENST00000489261	RGS12	O14924	1447 aa		13.86	□□□□□ -0.19
ITSN1-231	ENST00000489261	RGPD1	P0DJD0	1748 aa		13.86	□□□□□ -0.19
ITSN1-231	ENST00000489261	PEAK1	Q9H792	1746 aa		13.86	□□□□□ -0.19
ITSN1-231	ENST00000489261	MVP	Q14764	893 aa	Known RBP	13.85	□□□□□ -0.19
ITSN1-231	ENST00000489261	FTSJ3	Q8IY81	847 aa	Known RBP	13.85	□□□□□ -0.19
ITSN1-231	ENST00000489261	PANK1	Q8TE04	598 aa		13.85	□□□□□ -0.19
ITSN1-231	ENST00000489261	EYA1	Q99502	592 aa		13.85	□□□□□ -0.19
ITSN1-231	ENST00000489261	QTRT2	Q9H974	415 aa	Known RBP	13.85	□□□□□ -0.19
ITSN1-231	ENST00000489261	USP21	Q9UK80	565 aa		13.85	□□□□□ -0.19
ITSN1-231	ENST00000489261	LAS1L	Q9Y4W2	734 aa	Known RBP	13.85	□□□□□ -0.19
ITSN1-231	ENST00000489261	COL14A1	Q05707	1796 aa	Known RBP	13.84	□□□□□ -0.19
ITSN1-231	ENST00000489261	CHL1	O00533	1208 aa		13.84	□□□□□ -0.19
ITSN1-231	ENST00000489261	RBM6	P78332	1123 aa	Known RBP	13.84	□□□□□ -0.19
ITSN1-231	ENST00000489261	AEBP1	Q8IUX7	1158 aa		13.84	□□□□□ -0.19
ITSN1-231	ENST00000489261	RTF1	Q92541	710 aa	Known RBP	13.84	□□□□□ -0.19
ITSN1-231	ENST00000489261	RWDD1	Q9H446	243 aa	Predicted RBP	13.84	□□□□□ -0.19
ITSN1-231	ENST00000489261	MBIP	Q9NS73	344 aa		13.84	□□□□□ -0.19
ITSN1-231	ENST00000489261	BABAM1	Q9NWV8	329 aa		13.84	□□□□□ -0.19
ITSN1-231	ENST00000489261	DDX19B	Q9UMR2	479 aa		13.84	□□□□□ -0.19
ITSN1-231	ENST00000489261	SOX12	O15370	315 aa		13.83	□□□□□ -0.2
ITSN1-231	ENST00000489261	TRPC5	Q9UL62	973 aa	Predicted RBP	13.83	□□□□□ -0.2
ITSN1-231	ENST00000489261	NOB1	Q9ULX3	412 aa	Known RBP	13.83	□□□□□ -0.2
ITSN1-231	ENST00000489261	GLI3	P10071	1580 aa		13.83	□□□□□ -0.2
ITSN1-231	ENST00000489261	KIAA0232	Q92628	1395 aa		13.83	□□□□□ -0.2
ITSN1-231	ENST00000489261	CABLES1	Q8TDN4	633 aa		13.82	□□□□□ -0.2
ITSN1-231	ENST00000489261	TWISTNB	Q3B726	338 aa	Predicted RBP	13.81	□□□□□ -0.2
ITSN1-231	ENST00000489261	MRPL50	Q8N5N7	158 aa	Known RBP	13.81	□□□□□ -0.2
ITSN1-231	ENST00000489261	BCL2L13	Q9BXK5	485 aa		13.81	□□□□□ -0.2
ITSN1-231	ENST00000489261	SOS1	Q07889	1333 aa	Predicted RBP	13.81	□□□□□ -0.2
ITSN1-231	ENST00000489261	BRWD3	Q6RI45	1802 aa		13.8	□□□□□ -0.2
ITSN1-231	ENST00000489261	RLBP1	P12271	317 aa		13.8	□□□□□ -0.2
ITSN1-231	ENST00000489261	TRIM27	P14373	513 aa		13.8	□□□□□ -0.2
ITSN1-231	ENST00000489261	MTHFSD	Q2M296	383 aa	Known RBP	13.8	□□□□□ -0.2
ITSN1-231	ENST00000489261	NUTM2G	Q5VZR2	741 aa		13.8	□□□□□ -0.2
ITSN1-231	ENST00000489261	LMOD2	Q6P5Q4	547 aa		13.8	□□□□□ -0.2
ITSN1-231	ENST00000489261	THUMPD2	Q9BTF0	503 aa	Known RBP	13.8	□□□□□ -0.2
ITSN1-231	ENST00000489261	API5	Q9BZZ5	524 aa	Known RBP	13.8	□□□□□ -0.2
ITSN1-231	ENST00000489261	GC	P02774	474 aa		13.79	□□□□□ -0.2
ITSN1-231	ENST00000489261	UNC5CL	Q8IV45	518 aa		13.79	□□□□□ -0.2
ITSN1-231	ENST00000489261	USP19	O94966	1318 aa		13.79	□□□□□ -0.2
ITSN1-231	ENST00000489261	FAM83G	A6ND36	823 aa		13.78	□□□□□ -0.2
ITSN1-231	ENST00000489261	GNAT3	A8MTJ3	354 aa		13.78	□□□□□ -0.2
ITSN1-231	ENST00000489261	PDE4A	P27815	886 aa		13.78	□□□□□ -0.2
ITSN1-231	ENST00000489261	ARHGEF25	Q86VW2	580 aa		13.78	□□□□□ -0.2
ITSN1-231	ENST00000489261	CHMP4A	Q9BY43	222 aa		13.78	□□□□□ -0.2
ITSN1-231	ENST00000489261	CRB1	P82279	1406 aa		13.78	□□□□□ -0.2
ITSN1-231	ENST00000489261	NFAT5	O94916	1531 aa		13.78	□□□□□ -0.2
ITSN1-231	ENST00000489261	DLG5	Q8TDM6	1919 aa		13.78	□□□□□ -0.2
ITSN1-231	ENST00000489261	SLIT3	O75094	1523 aa		13.77	□□□□□ -0.21
ITSN1-231	ENST00000489261	IGHD	P01880	384 aa		13.77	□□□□□ -0.21
ITSN1-231	ENST00000489261	BACH2	Q9BYV9	841 aa		13.77	□□□□□ -0.21
ITSN1-231	ENST00000489261	HDAC1	Q13547	482 aa	Predicted RBP	13.76	□□□□□ -0.21
ITSN1-231	ENST00000489261	DCTN1	Q14203	1278 aa		13.76	□□□□□ -0.21
ITSN1-231	ENST00000489261	AMOT	Q4VCS5	1084 aa		13.76	□□□□□ -0.21
ITSN1-231	ENST00000489261	TSPYL6	Q8N831	410 aa		13.76	□□□□□ -0.21
ITSN1-231	ENST00000489261	C8orf58	Q8NAV2	365 aa		13.76	□□□□□ -0.21
ITSN1-231	ENST00000489261	GJD4	Q96KN9	370 aa	Predicted RBP	13.76	□□□□□ -0.21
ITSN1-231	ENST00000489261	LMO7	Q8WWI1	1683 aa		13.75	□□□□□ -0.21
ITSN1-231	ENST00000489261	MCM10	Q7L590	875 aa		13.75	□□□□□ -0.21
ITSN1-231	ENST00000489261	ITPRIP	Q8IWB1	547 aa		13.75	□□□□□ -0.21
ITSN1-231	ENST00000489261	TMEM57	Q8N5G2	664 aa		13.75	□□□□□ -0.21
ITSN1-231	ENST00000489261	UPF1	Q92900	1129 aa	Known RBP eCLIP	13.75	□□□□□ -0.21
ITSN1-231	ENST00000489261	PCDHB15	Q9Y5E8	787 aa		13.75	□□□□□ -0.21
ITSN1-231	ENST00000489261	PLEKHG5	O94827	1062 aa		13.74	□□□□□ -0.21
ITSN1-231	ENST00000489261	PLEKHO1	Q53GL0	409 aa	Predicted RBP	13.74	□□□□□ -0.21
ITSN1-231	ENST00000489261	ZBTB40	Q9NUA8	1239 aa		13.74	□□□□□ -0.21
ITSN1-231	ENST00000489261	TNN	Q9UQP3	1299 aa		13.74	□□□□□ -0.21
ITSN1-231	ENST00000489261	MAP3K5	Q99683	1374 aa		13.73	□□□□□ -0.21
ITSN1-231	ENST00000489261	PTPRC	P08575	1304 aa		13.73	□□□□□ -0.21
ITSN1-231	ENST00000489261	TAF7	Q15545	349 aa	Predicted RBP	13.73	□□□□□ -0.21
ITSN1-231	ENST00000489261	VPS72	Q15906	364 aa		13.73	□□□□□ -0.21
ITSN1-231	ENST00000489261	LTV1	Q96GA3	475 aa	Predicted RBP	13.73	□□□□□ -0.21
ITSN1-231	ENST00000489261	TSPYL4	Q9UJ04	414 aa		13.73	□□□□□ -0.21
ITSN1-231	ENST00000489261	ABCC4	O15439	1325 aa		13.72	□□□□□ -0.21
ITSN1-231	ENST00000489261	ANP32A	P39687	249 aa	Known RBP	13.72	□□□□□ -0.21
ITSN1-231	ENST00000489261	FAM161A	Q3B820	660 aa		13.72	□□□□□ -0.21
ITSN1-231	ENST00000489261	THSD7A	Q9UPZ6	1657 aa		13.72	□□□□□ -0.21
ITSN1-231	ENST00000489261	PLEKHG2	Q9H7P9	1386 aa		13.71	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms