RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 CEP85Q6P2H3 762 aa15.03■□□□□ -0
COL3A1-206ENST00000487010 ZSCAN30Q86W11 494 aa15.03■□□□□ -0
COL3A1-206ENST00000487010 SETD1AO15047 1707 aaKnown RBP15.03■□□□□ -0
COL3A1-206ENST00000487010 GLIPR1L2Q4G1C9 344 aa15.02■□□□□ -0
COL3A1-206ENST00000487010 CASC1Q6TDU7 716 aa15.02■□□□□ -0
COL3A1-206ENST00000487010 ST18O60284 1047 aa15.02□□□□□ -0.01
COL3A1-206ENST00000487010 TPM2P07951 284 aa15.02□□□□□ -0.01
COL3A1-206ENST00000487010 RRS1Q15050 365 aaKnown RBP15.02□□□□□ -0.01
COL3A1-206ENST00000487010 ZSCAN23Q3MJ62 389 aa15.02□□□□□ -0.01
COL3A1-206ENST00000487010 COG3Q96JB2 828 aa15.02□□□□□ -0.01
COL3A1-206ENST00000487010 WASLO00401 505 aaPredicted RBP15.01□□□□□ -0.01
COL3A1-206ENST00000487010 HAP1P54257 671 aaPredicted RBP15.01□□□□□ -0.01
COL3A1-206ENST00000487010 PKP1Q13835 747 aa15.01□□□□□ -0.01
COL3A1-206ENST00000487010 CAVIN1Q6NZI2 390 aaKnown RBP15.01□□□□□ -0.01
COL3A1-206ENST00000487010 RTL1A6NKG5 1358 aa15.01□□□□□ -0.01
COL3A1-206ENST00000487010 NCLP19338 710 aaKnown RBP15.01□□□□□ -0.01
COL3A1-206ENST00000487010 MON2Q7Z3U7 1717 aa15□□□□□ -0.01
COL3A1-206ENST00000487010 CPS1P31327 1500 aa15□□□□□ -0.01
COL3A1-206ENST00000487010 SMARCA5O60264 1052 aaPredicted RBP15□□□□□ -0.01
COL3A1-206ENST00000487010 CHL1O00533 1208 aa14.99□□□□□ -0.01
COL3A1-206ENST00000487010 REC8O95072 547 aa14.99□□□□□ -0.01
COL3A1-206ENST00000487010 MSH6P52701 1360 aa14.99□□□□□ -0.01
COL3A1-206ENST00000487010 A2ML1A8K2U0 1454 aa14.99□□□□□ -0.01
COL3A1-206ENST00000487010 PTPRCP08575 1304 aa14.99□□□□□ -0.01
COL3A1-206ENST00000487010 KRT24Q2M2I5 525 aa14.99□□□□□ -0.01
COL3A1-206ENST00000487010 ZGPATQ8N5A5 531 aaKnown RBP14.99□□□□□ -0.01
COL3A1-206ENST00000487010 KIAA0232Q92628 1395 aa14.99□□□□□ -0.01
COL3A1-206ENST00000487010 HS1BP3Q53T59 392 aa14.98□□□□□ -0.01
COL3A1-206ENST00000487010 ZDHHC9Q9Y397 364 aa14.98□□□□□ -0.01
COL3A1-206ENST00000487010 NRKQ7Z2Y5 1582 aa14.98□□□□□ -0.01
COL3A1-206ENST00000487010 APBB1O00213 710 aa14.97□□□□□ -0.01
COL3A1-206ENST00000487010 ERC2O15083 957 aa14.97□□□□□ -0.01
COL3A1-206ENST00000487010 PRPF40AO75400 957 aaKnown RBP14.97□□□□□ -0.01
COL3A1-206ENST00000487010 OFD1O75665 1012 aa14.97□□□□□ -0.01
COL3A1-206ENST00000487010 MSNP26038 577 aaKnown RBP14.97□□□□□ -0.01
COL3A1-206ENST00000487010 NUDT16Q96DE0 195 aaKnown RBP14.97□□□□□ -0.01
COL3A1-206ENST00000487010 MEIS3Q99687 375 aa14.97□□□□□ -0.01
COL3A1-206ENST00000487010 RBSNQ9H1K0 784 aa14.97□□□□□ -0.01
COL3A1-206ENST00000487010 C3P01024 1663 aa14.97□□□□□ -0.01
COL3A1-206ENST00000487010 KIAA1211Q6ZU35 1233 aa14.97□□□□□ -0.01
COL3A1-206ENST00000487010 AKAP12Q02952 1782 aa14.97□□□□□ -0.01
COL3A1-206ENST00000487010 AEBP1Q8IUX7 1158 aa14.96□□□□□ -0.01
COL3A1-206ENST00000487010 GPT2Q8TD30 523 aa14.96□□□□□ -0.01
COL3A1-206ENST00000487010 PRIM1P49642 420 aaKnown RBP14.96□□□□□ -0.02
COL3A1-206ENST00000487010 PDLIM2Q96JY6 352 aa14.96□□□□□ -0.02
COL3A1-206ENST00000487010 OSBPL3Q9H4L5 887 aa14.96□□□□□ -0.02
COL3A1-206ENST00000487010 CCDC61Q9Y6R9 512 aa14.96□□□□□ -0.02
COL3A1-206ENST00000487010 EIF4A2Q14240 407 aaKnown RBP14.95□□□□□ -0.02
COL3A1-206ENST00000487010 SULT6B1Q6IMI4 303 aa14.95□□□□□ -0.02
COL3A1-206ENST00000487010 NCKAP5LQ9HCH0 1330 aa14.95□□□□□ -0.02
COL3A1-206ENST00000487010 ITSN1Q15811 1721 aa14.95□□□□□ -0.02
COL3A1-206ENST00000487010 HMMRO75330 724 aa14.94□□□□□ -0.02
COL3A1-206ENST00000487010 RBM27Q9P2N5 1060 aaKnown RBP14.94□□□□□ -0.02
COL3A1-206ENST00000487010 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.94□□□□□ -0.02
COL3A1-206ENST00000487010 MCM10Q7L590 875 aa14.94□□□□□ -0.02
COL3A1-206ENST00000487010 NOL7Q9UMY1 257 aaKnown RBP14.94□□□□□ -0.02
COL3A1-206ENST00000487010 NRXN3Q9Y4C0 1643 aa14.94□□□□□ -0.02
COL3A1-206ENST00000487010 SPATA31D1Q6ZQQ2 1576 aa14.93□□□□□ -0.02
COL3A1-206ENST00000487010 PDE1AP54750 535 aa14.93□□□□□ -0.02
COL3A1-206ENST00000487010 PPP6R1Q9UPN7 881 aa14.93□□□□□ -0.02
COL3A1-206ENST00000487010 SLC4A2P04920 1241 aa14.93□□□□□ -0.02
COL3A1-206ENST00000487010 TERF1P54274 439 aa14.93□□□□□ -0.02
COL3A1-206ENST00000487010 LRSAM1Q6UWE0 723 aa14.93□□□□□ -0.02
COL3A1-206ENST00000487010 TXNDC2Q86VQ3 553 aa14.93□□□□□ -0.02
COL3A1-206ENST00000487010 METP08581 1390 aa14.92□□□□□ -0.02
COL3A1-206ENST00000487010 TMEM63CQ9P1W3 806 aa14.92□□□□□ -0.02
COL3A1-206ENST00000487010 CRB1P82279 1406 aa14.92□□□□□ -0.02
COL3A1-206ENST00000487010 ZNF500O60304 480 aaPredicted RBP14.91□□□□□ -0.02
COL3A1-206ENST00000487010 MCM2P49736 904 aa14.91□□□□□ -0.02
COL3A1-206ENST00000487010 NEK4P51957 841 aa14.91□□□□□ -0.02
COL3A1-206ENST00000487010 SIRT1Q96EB6 747 aa14.91□□□□□ -0.02
COL3A1-206ENST00000487010 TMX3Q96JJ7 454 aa14.91□□□□□ -0.02
COL3A1-206ENST00000487010 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.91□□□□□ -0.02
COL3A1-206ENST00000487010 CCT4P50991 539 aaKnown RBP14.9□□□□□ -0.02
COL3A1-206ENST00000487010 CHAMP1Q96JM3 812 aa14.9□□□□□ -0.02
COL3A1-206ENST00000487010 NSFL1CQ9UNZ2 370 aaKnown RBP14.9□□□□□ -0.02
COL3A1-206ENST00000487010 TUBGCP6Q96RT7 1819 aa14.9□□□□□ -0.02
COL3A1-206ENST00000487010 AGLP35573 1532 aa14.9□□□□□ -0.02
COL3A1-206ENST00000487010 MBD3O95983 291 aa14.89□□□□□ -0.03
COL3A1-206ENST00000487010 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.89□□□□□ -0.03
COL3A1-206ENST00000487010 PDCL3Q9H2J4 239 aa14.89□□□□□ -0.03
COL3A1-206ENST00000487010 SYCE3A1L190 88 aa14.89□□□□□ -0.03
COL3A1-206ENST00000487010 BRD1O95696 1058 aa14.89□□□□□ -0.03
COL3A1-206ENST00000487010 CUL4AQ13619 759 aa14.89□□□□□ -0.03
COL3A1-206ENST00000487010 ESYT1Q9BSJ8 1104 aa14.89□□□□□ -0.03
COL3A1-206ENST00000487010 PRR36Q9H6K5 1346 aa14.89□□□□□ -0.03
COL3A1-206ENST00000487010 RGPD1P0DJD0 1748 aa14.89□□□□□ -0.03
COL3A1-206ENST00000487010 SALL3Q9BXA9 1300 aa14.88□□□□□ -0.03
COL3A1-206ENST00000487010 SLC4A10Q6U841 1118 aa14.88□□□□□ -0.03
COL3A1-206ENST00000487010 G2E3Q7L622 706 aa14.88□□□□□ -0.03
COL3A1-206ENST00000487010 VSIG10Q8N0Z9 540 aa14.88□□□□□ -0.03
COL3A1-206ENST00000487010 TECPR2O15040 1411 aa14.88□□□□□ -0.03
COL3A1-206ENST00000487010 F6X3S4 739 aa14.88□□□□□ -0.03
COL3A1-206ENST00000487010 FOXD4L5Q5VV16 416 aaPredicted RBP14.88□□□□□ -0.03
COL3A1-206ENST00000487010 FOXD4L4Q8WXT5 416 aaPredicted RBP14.88□□□□□ -0.03
COL3A1-206ENST00000487010 TTC21BQ7Z4L5 1316 aa14.87□□□□□ -0.03
COL3A1-206ENST00000487010 GNAI2P04899 355 aa14.87□□□□□ -0.03
COL3A1-206ENST00000487010 MCCP23508 829 aa14.87□□□□□ -0.03
COL3A1-206ENST00000487010 MCM5P33992 734 aa14.87□□□□□ -0.03
COL3A1-206ENST00000487010 MIS18AQ9NYP9 233 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms