RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 TATP17735 454 aaPredicted RBP21.5■■□□□ 1.03
UPF3A-208ENST00000484246 TNS1Q9HBL0 1735 aaKnown RBP21.49■■□□□ 1.03
UPF3A-208ENST00000484246 DDX10Q13206 875 aaKnown RBP21.49■■□□□ 1.03
UPF3A-208ENST00000484246 SF3B2Q13435 895 aaKnown RBP21.49■■□□□ 1.03
UPF3A-208ENST00000484246 ZCRB1Q8TBF4 217 aaKnown RBP21.49■■□□□ 1.03
UPF3A-208ENST00000484246 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.49■■□□□ 1.03
UPF3A-208ENST00000484246 PKD1L3Q7Z443 1732 aa21.47■■□□□ 1.03
UPF3A-208ENST00000484246 SHANK3Q9BYB0 1731 aa21.47■■□□□ 1.03
UPF3A-208ENST00000484246 PPP2R1AP30153 589 aa21.47■■□□□ 1.03
UPF3A-208ENST00000484246 TRIM37O94972 964 aa21.46■■□□□ 1.03
UPF3A-208ENST00000484246 BAG6P46379 1132 aa21.46■■□□□ 1.03
UPF3A-208ENST00000484246 PCDH11XQ9BZA7 1347 aa21.46■■□□□ 1.03
UPF3A-208ENST00000484246 PCDH11YQ9BZA8 1340 aa21.46■■□□□ 1.03
UPF3A-208ENST00000484246 BCL11BQ9C0K0 894 aaPredicted RBP21.45■■□□□ 1.02
UPF3A-208ENST00000484246 ZNF316A6NFI3 1004 aaPredicted RBP21.44■■□□□ 1.02
UPF3A-208ENST00000484246 DIAPH1O60610 1272 aaKnown RBP21.44■■□□□ 1.02
UPF3A-208ENST00000484246 RALBP1Q15311 655 aa21.43■■□□□ 1.02
UPF3A-208ENST00000484246 NHSQ6T4R5 1651 aa21.43■■□□□ 1.02
UPF3A-208ENST00000484246 CNGB1Q14028 1251 aaPredicted RBP21.42■■□□□ 1.02
UPF3A-208ENST00000484246 DEFB132Q7Z7B7 95 aa21.42■■□□□ 1.02
UPF3A-208ENST00000484246 CFAP53Q96M91 514 aa21.42■■□□□ 1.02
UPF3A-208ENST00000484246 SPG7Q9UQ90 795 aa21.42■■□□□ 1.02
UPF3A-208ENST00000484246 DDX54Q8TDD1 881 aaKnown RBP21.41■■□□□ 1.02
UPF3A-208ENST00000484246 CYP27B1O15528 508 aa21.4■■□□□ 1.02
UPF3A-208ENST00000484246 SULT6B1Q6IMI4 303 aa21.4■■□□□ 1.02
UPF3A-208ENST00000484246 AEBP1Q8IUX7 1158 aa21.4■■□□□ 1.02
UPF3A-208ENST00000484246 SBF2Q86WG5 1849 aa21.39■■□□□ 1.02
UPF3A-208ENST00000484246 RGPD3A6NKT7 1758 aaPredicted RBP21.39■■□□□ 1.01
UPF3A-208ENST00000484246 RGPD4Q7Z3J3 1758 aa21.39■■□□□ 1.01
UPF3A-208ENST00000484246 NKX1-1Q15270 411 aaPredicted RBP21.39■■□□□ 1.01
UPF3A-208ENST00000484246 PLSCR1O15162 318 aa21.38■■□□□ 1.01
UPF3A-208ENST00000484246 APBA3O96018 575 aa21.38■■□□□ 1.01
UPF3A-208ENST00000484246 CAMKK2Q96RR4 588 aa21.38■■□□□ 1.01
UPF3A-208ENST00000484246 AMOTQ4VCS5 1084 aa21.37■■□□□ 1.01
UPF3A-208ENST00000484246 EN1Q05925 392 aaPredicted RBP21.36■■□□□ 1.01
UPF3A-208ENST00000484246 PTF1AQ7RTS3 328 aa21.36■■□□□ 1.01
UPF3A-208ENST00000484246 KCNQ2O43526 872 aa21.35■■□□□ 1.01
UPF3A-208ENST00000484246 PHKG2P15735 406 aa21.35■■□□□ 1.01
UPF3A-208ENST00000484246 KCNA4P22459 653 aa21.35■■□□□ 1.01
UPF3A-208ENST00000484246 PLEKHO1Q53GL0 409 aaPredicted RBP21.35■■□□□ 1.01
UPF3A-208ENST00000484246 IFNL2Q8IZJ0 200 aa21.34■■□□□ 1.01
UPF3A-208ENST00000484246 MYBBP1AQ9BQG0 1328 aaKnown RBP21.33■■□□□ 1.01
UPF3A-208ENST00000484246 DOT1LQ8TEK3 1739 aa21.33■■□□□ 1.01
UPF3A-208ENST00000484246 ACSBG1Q96GR2 724 aa21.33■■□□□ 1.01
UPF3A-208ENST00000484246 NUDCQ9Y266 331 aa21.33■■□□□ 1.01
UPF3A-208ENST00000484246 RREB1Q92766 1687 aa21.32■■□□□ 1
UPF3A-208ENST00000484246 EZH2Q15910 746 aaKnown RBP21.32■■□□□ 1
UPF3A-208ENST00000484246 PRKRIP1Q9H875 184 aaPredicted RBP21.32■■□□□ 1
UPF3A-208ENST00000484246 HSP90AB1P08238 724 aaKnown RBP21.31■■□□□ 1
UPF3A-208ENST00000484246 HMOX1P09601 288 aa21.31■■□□□ 1
UPF3A-208ENST00000484246 U2SURPO15042 1029 aaKnown RBP21.3■■□□□ 1
UPF3A-208ENST00000484246 PRIM1P49642 420 aaKnown RBP21.3■■□□□ 1
UPF3A-208ENST00000484246 TOGARAM1Q9Y4F4 1720 aa21.29■■□□□ 1
UPF3A-208ENST00000484246 ZNF530Q6P9A1 599 aaPredicted RBP21.29■■□□□ 1
UPF3A-208ENST00000484246 CNKSR2Q8WXI2 1034 aa21.29■■□□□ 1
UPF3A-208ENST00000484246 RSPH6AQ9H0K4 717 aa21.28■■□□□ 1
UPF3A-208ENST00000484246 KDM6AO15550 1401 aaPredicted RBP21.28■■□□□ 1
UPF3A-208ENST00000484246 DCAF5Q96JK2 942 aa21.27■■□□□ 1
UPF3A-208ENST00000484246 BTAF1O14981 1849 aa21.27■□□□□ 0.99
UPF3A-208ENST00000484246 NUP188Q5SRE5 1749 aa21.26■□□□□ 0.99
UPF3A-208ENST00000484246 FCHSD2O94868 740 aa21.25■□□□□ 0.99
UPF3A-208ENST00000484246 AKAP4Q5JQC9 854 aa21.25■□□□□ 0.99
UPF3A-208ENST00000484246 C1orf141Q5JVX7 400 aa21.25■□□□□ 0.99
UPF3A-208ENST00000484246 PROM2Q8N271 834 aa21.25■□□□□ 0.99
UPF3A-208ENST00000484246 ERVV-2B6SEH9 535 aa21.24■□□□□ 0.99
UPF3A-208ENST00000484246 U2AF1L5P0DN76 240 aaPredicted RBP21.24■□□□□ 0.99
UPF3A-208ENST00000484246 U2AF1Q01081 240 aaKnown RBP eCLIP21.24■□□□□ 0.99
UPF3A-208ENST00000484246 TXNRD1Q16881 649 aa21.24■□□□□ 0.99
UPF3A-208ENST00000484246 NCBP3Q53F19 620 aaKnown RBP21.24■□□□□ 0.99
UPF3A-208ENST00000484246 SYTL4Q96C24 671 aaPredicted RBP21.24■□□□□ 0.99
UPF3A-208ENST00000484246 MTHFSDQ2M296 383 aaKnown RBP21.23■□□□□ 0.99
UPF3A-208ENST00000484246 GAS2L2Q8NHY3 880 aa21.23■□□□□ 0.99
UPF3A-208ENST00000484246 MRC1P22897 1456 aa21.23■□□□□ 0.99
UPF3A-208ENST00000484246 ADAMTS7Q9UKP4 1686 aa21.22■□□□□ 0.99
UPF3A-208ENST00000484246 PRKAR2BP31323 418 aa21.22■□□□□ 0.99
UPF3A-208ENST00000484246 SLC27A3Q5K4L6 730 aa21.21■□□□□ 0.99
UPF3A-208ENST00000484246 PIGBQ92521 554 aa21.21■□□□□ 0.99
UPF3A-208ENST00000484246 PAPPAQ13219 1627 aa21.21■□□□□ 0.99
UPF3A-208ENST00000484246 TMOD3Q9NYL9 352 aa21.2■□□□□ 0.98
UPF3A-208ENST00000484246 MPRIPQ6WCQ1 1025 aa21.19■□□□□ 0.98
UPF3A-208ENST00000484246 SMARCC1Q92922 1105 aaPredicted RBP21.19■□□□□ 0.98
UPF3A-208ENST00000484246 PALLDQ8WX93 1383 aa21.19■□□□□ 0.98
UPF3A-208ENST00000484246 MAP3K5Q99683 1374 aa21.19■□□□□ 0.98
UPF3A-208ENST00000484246 LY75O60449 1722 aa21.18■□□□□ 0.98
UPF3A-208ENST00000484246 PHACTR3Q96KR7 559 aa21.17■□□□□ 0.98
UPF3A-208ENST00000484246 NBPF14Q5TI25 921 aa21.16■□□□□ 0.98
UPF3A-208ENST00000484246 PLEKHF1Q96S99 279 aa21.16■□□□□ 0.98
UPF3A-208ENST00000484246 LRRC4BQ9NT99 713 aa21.16■□□□□ 0.98
UPF3A-208ENST00000484246 RNMTO43148 476 aaKnown RBP21.15■□□□□ 0.98
UPF3A-208ENST00000484246 HMGB2P26583 209 aaKnown RBP21.15■□□□□ 0.98
UPF3A-208ENST00000484246 PNNQ9H307 717 aaKnown RBP21.15■□□□□ 0.98
UPF3A-208ENST00000484246 ANO8Q9HCE9 1232 aaPredicted RBP21.15■□□□□ 0.98
UPF3A-208ENST00000484246 ITGB4P16144 1822 aa21.15■□□□□ 0.98
UPF3A-208ENST00000484246 CEMIPQ8WUJ3 1361 aa21.14■□□□□ 0.98
UPF3A-208ENST00000484246 CABP4P57796 275 aa21.14■□□□□ 0.97
UPF3A-208ENST00000484246 GNAT3A8MTJ3 354 aa21.13■□□□□ 0.97
UPF3A-208ENST00000484246 SLC52A2Q9HAB3 445 aa21.13■□□□□ 0.97
UPF3A-208ENST00000484246 ATG3Q9NT62 314 aa21.13■□□□□ 0.97
UPF3A-208ENST00000484246 SCN11AQ9UI33 1791 aa21.13■□□□□ 0.97
UPF3A-208ENST00000484246 ANP32CO43423 234 aa21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms