RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 GCP02774 474 aa18.42■□□□□ 0.54
CHD3-211ENST00000481999 KRT28Q7Z3Y7 464 aa18.42■□□□□ 0.54
CHD3-211ENST00000481999 NFAT5O94916 1531 aa18.42■□□□□ 0.54
CHD3-211ENST00000481999 DEKP35659 375 aaKnown RBP18.41■□□□□ 0.54
CHD3-211ENST00000481999 RTL5Q5HYW3 569 aaPredicted RBP18.41■□□□□ 0.54
CHD3-211ENST00000481999 MRPL50Q8N5N7 158 aaKnown RBP18.41■□□□□ 0.54
CHD3-211ENST00000481999 DDRGK1Q96HY6 314 aa18.41■□□□□ 0.54
CHD3-211ENST00000481999 BCL11AQ9H165 835 aa18.41■□□□□ 0.54
CHD3-211ENST00000481999 AXIN2Q9Y2T1 843 aa18.4■□□□□ 0.54
CHD3-211ENST00000481999 RGPD2P0DJD1 1756 aa18.39■□□□□ 0.53
CHD3-211ENST00000481999 KIF16BQ96L93 1317 aa18.39■□□□□ 0.53
CHD3-211ENST00000481999 CHL1O00533 1208 aa18.39■□□□□ 0.53
CHD3-211ENST00000481999 ATF3P18847 181 aa18.39■□□□□ 0.53
CHD3-211ENST00000481999 ZC3H6P61129 1189 aaKnown RBP18.39■□□□□ 0.53
CHD3-211ENST00000481999 ALDH1L2Q3SY69 923 aa18.39■□□□□ 0.53
CHD3-211ENST00000481999 CABLES1Q8TDN4 633 aa18.39■□□□□ 0.53
CHD3-211ENST00000481999 CRB1P82279 1406 aa18.39■□□□□ 0.53
CHD3-211ENST00000481999 IP6K1Q92551 441 aa18.39■□□□□ 0.53
CHD3-211ENST00000481999 C1orf115Q9H7X2 142 aa18.38■□□□□ 0.53
CHD3-211ENST00000481999 USP54Q70EL1 1684 aa18.38■□□□□ 0.53
CHD3-211ENST00000481999 FAM161AQ3B820 660 aa18.38■□□□□ 0.53
CHD3-211ENST00000481999 RTF1Q92541 710 aaKnown RBP18.38■□□□□ 0.53
CHD3-211ENST00000481999 MST1RQ04912 1400 aa18.37■□□□□ 0.53
CHD3-211ENST00000481999 IL17REQ8NFR9 667 aa18.35■□□□□ 0.53
CHD3-211ENST00000481999 TSPYL4Q9UJ04 414 aa18.35■□□□□ 0.53
CHD3-211ENST00000481999 ARHGEF25Q86VW2 580 aa18.34■□□□□ 0.53
CHD3-211ENST00000481999 NECTIN2Q92692 538 aa18.34■□□□□ 0.53
CHD3-211ENST00000481999 MSH6P52701 1360 aa18.34■□□□□ 0.53
CHD3-211ENST00000481999 IPO8O15397 1037 aaKnown RBP18.34■□□□□ 0.53
CHD3-211ENST00000481999 KCNH5Q8NCM2 988 aa18.34■□□□□ 0.53
CHD3-211ENST00000481999 DDX19BQ9UMR2 479 aa18.34■□□□□ 0.53
CHD3-211ENST00000481999 TRPM3Q9HCF6 1732 aaPredicted RBP18.34■□□□□ 0.53
CHD3-211ENST00000481999 GAS2L2Q8NHY3 880 aa18.33■□□□□ 0.53
CHD3-211ENST00000481999 XIRP1Q702N8 1843 aaKnown RBP18.33■□□□□ 0.52
CHD3-211ENST00000481999 ZBTB40Q9NUA8 1239 aa18.33■□□□□ 0.52
CHD3-211ENST00000481999 GNAT3A8MTJ3 354 aa18.32■□□□□ 0.52
CHD3-211ENST00000481999 KIF24Q5T7B8 1368 aa18.32■□□□□ 0.52
CHD3-211ENST00000481999 C8orf34Q49A92 452 aa18.32■□□□□ 0.52
CHD3-211ENST00000481999 PDZRN3Q9UPQ7 1066 aa18.32■□□□□ 0.52
CHD3-211ENST00000481999 LGR6Q9HBX8 967 aa18.31■□□□□ 0.52
CHD3-211ENST00000481999 RTL1A6NKG5 1358 aa18.31■□□□□ 0.52
CHD3-211ENST00000481999 CERKQ8TCT0 537 aa18.31■□□□□ 0.52
CHD3-211ENST00000481999 AAMPQ13685 434 aa18.3■□□□□ 0.52
CHD3-211ENST00000481999 ANKRD24Q8TF21 1146 aa18.3■□□□□ 0.52
CHD3-211ENST00000481999 USP35Q9P2H5 1018 aa18.3■□□□□ 0.52
CHD3-211ENST00000481999 BRPF1P55201 1214 aaPredicted RBP18.3■□□□□ 0.52
CHD3-211ENST00000481999 ZNF428Q96B54 188 aa18.3■□□□□ 0.52
CHD3-211ENST00000481999 RGPD5Q99666 1765 aa18.3■□□□□ 0.52
CHD3-211ENST00000481999 CHRNA2Q15822 529 aa18.29■□□□□ 0.52
CHD3-211ENST00000481999 G2E3Q7L622 706 aa18.29■□□□□ 0.52
CHD3-211ENST00000481999 ZBTB7BO15156 539 aaPredicted RBP18.29■□□□□ 0.52
CHD3-211ENST00000481999 USP19O94966 1318 aa18.29■□□□□ 0.52
CHD3-211ENST00000481999 MAP3K5Q99683 1374 aa18.29■□□□□ 0.52
CHD3-211ENST00000481999 MED1Q15648 1581 aaPredicted RBP18.29■□□□□ 0.52
CHD3-211ENST00000481999 SLC4A2P04920 1241 aa18.28■□□□□ 0.52
CHD3-211ENST00000481999 RWDD1Q9H446 243 aaPredicted RBP18.28■□□□□ 0.52
CHD3-211ENST00000481999 SLIT3O75094 1523 aa18.28■□□□□ 0.52
CHD3-211ENST00000481999 ABCC4O15439 1325 aa18.27■□□□□ 0.52
CHD3-211ENST00000481999 NCOA3Q9Y6Q9 1424 aa18.27■□□□□ 0.52
CHD3-211ENST00000481999 MPRIPQ6WCQ1 1025 aa18.27■□□□□ 0.52
CHD3-211ENST00000481999 CADPS2Q86UW7 1296 aa18.27■□□□□ 0.52
CHD3-211ENST00000481999 F6X3S4 739 aa18.26■□□□□ 0.51
CHD3-211ENST00000481999 PXDNQ92626 1479 aa18.26■□□□□ 0.51
CHD3-211ENST00000481999 RGS12O14924 1447 aa18.26■□□□□ 0.51
CHD3-211ENST00000481999 KCNQ3O43525 872 aa18.25■□□□□ 0.51
CHD3-211ENST00000481999 ALS2Q96Q42 1657 aa18.25■□□□□ 0.51
CHD3-211ENST00000481999 DAXXQ9UER7 740 aaPredicted RBP18.25■□□□□ 0.51
CHD3-211ENST00000481999 KIF1AQ12756 1690 aa18.25■□□□□ 0.51
CHD3-211ENST00000481999 BRINP3Q76B58 766 aa18.24■□□□□ 0.51
CHD3-211ENST00000481999 ARHGAP45Q92619 1136 aa18.24■□□□□ 0.51
CHD3-211ENST00000481999 KIAA0232Q92628 1395 aa18.24■□□□□ 0.51
CHD3-211ENST00000481999 SEC24BO95487 1268 aa18.24■□□□□ 0.51
CHD3-211ENST00000481999 ZNF530Q6P9A1 599 aaPredicted RBP18.24■□□□□ 0.51
CHD3-211ENST00000481999 SIRT2Q8IXJ6 389 aa18.24■□□□□ 0.51
CHD3-211ENST00000481999 ERBB3P21860 1342 aa18.24■□□□□ 0.51
CHD3-211ENST00000481999 NPHP3Q7Z494 1330 aa18.22■□□□□ 0.51
CHD3-211ENST00000481999 LRRC37A3O60309 1634 aa18.22■□□□□ 0.51
CHD3-211ENST00000481999 HDAC1Q13547 482 aaPredicted RBP18.22■□□□□ 0.51
CHD3-211ENST00000481999 SLC4A10Q6U841 1118 aa18.22■□□□□ 0.51
CHD3-211ENST00000481999 NLRP2Q9NX02 1062 aa18.21■□□□□ 0.51
CHD3-211ENST00000481999 TAF7Q15545 349 aaPredicted RBP18.21■□□□□ 0.51
CHD3-211ENST00000481999 API5Q9BZZ5 524 aaKnown RBP18.21■□□□□ 0.51
CHD3-211ENST00000481999 DCCP43146 1447 aa18.21■□□□□ 0.51
CHD3-211ENST00000481999 PHRF1Q9P1Y6 1649 aaKnown RBP18.21■□□□□ 0.5
CHD3-211ENST00000481999 LNPKQ9C0E8 428 aa18.2■□□□□ 0.5
CHD3-211ENST00000481999 HTATSF1O43719 755 aaKnown RBP18.19■□□□□ 0.5
CHD3-211ENST00000481999 MEIS3Q99687 375 aa18.19■□□□□ 0.5
CHD3-211ENST00000481999 CEMIPQ8WUJ3 1361 aa18.19■□□□□ 0.5
CHD3-211ENST00000481999 EIF2S2P20042 333 aaKnown RBP18.18■□□□□ 0.5
CHD3-211ENST00000481999 SPATA31A3Q5VYP0 1347 aa18.18■□□□□ 0.5
CHD3-211ENST00000481999 TNS3Q68CZ2 1445 aa18.18■□□□□ 0.5
CHD3-211ENST00000481999 UBAP1LF5GYI3 381 aa18.18■□□□□ 0.5
CHD3-211ENST00000481999 ANXA1P04083 346 aa18.18■□□□□ 0.5
CHD3-211ENST00000481999 SMC5Q8IY18 1101 aa18.18■□□□□ 0.5
CHD3-211ENST00000481999 SLAIN2Q9P270 581 aa18.18■□□□□ 0.5
CHD3-211ENST00000481999 PRAMEF22A3QJZ6 481 aa18.17■□□□□ 0.5
CHD3-211ENST00000481999 CSB-PGBD3P0DP91 1061 aa18.17■□□□□ 0.5
CHD3-211ENST00000481999 PLEKHO1Q53GL0 409 aaPredicted RBP18.16■□□□□ 0.5
CHD3-211ENST00000481999 PHAXQ9H814 394 aaKnown RBP18.16■□□□□ 0.5
CHD3-211ENST00000481999 SLC4A3P48751 1232 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms