RNA–Protein interactions for RNA: ENST00000479868.6

SEC13-216, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best)

Gene SEC13, Length 2,374 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-216ENST00000479868 NBR1Q14596 966 aa16.46■□□□□ 0.23
SEC13-216ENST00000479868 ESCO1Q5FWF5 840 aa16.46■□□□□ 0.23
SEC13-216ENST00000479868 KIAA0232Q92628 1395 aa16.46■□□□□ 0.23
SEC13-216ENST00000479868 LTN1O94822 1766 aa16.46■□□□□ 0.23
SEC13-216ENST00000479868 MIS18AQ9NYP9 233 aa16.46■□□□□ 0.23
SEC13-216ENST00000479868 C1orf115Q9H7X2 142 aa16.45■□□□□ 0.22
SEC13-216ENST00000479868 RTF1Q92541 710 aaKnown RBP16.45■□□□□ 0.22
SEC13-216ENST00000479868 API5Q9BZZ5 524 aaKnown RBP16.45■□□□□ 0.22
SEC13-216ENST00000479868 SLC4A3P48751 1232 aa16.44■□□□□ 0.22
SEC13-216ENST00000479868 LTV1Q96GA3 475 aaPredicted RBP16.44■□□□□ 0.22
SEC13-216ENST00000479868 RTN4Q9NQC3 1192 aaKnown RBP16.44■□□□□ 0.22
SEC13-216ENST00000479868 GAS2L2Q8NHY3 880 aa16.44■□□□□ 0.22
SEC13-216ENST00000479868 NFAT5O94916 1531 aa16.43■□□□□ 0.22
SEC13-216ENST00000479868 PSME1Q06323 249 aa16.43■□□□□ 0.22
SEC13-216ENST00000479868 CHMP4BQ9H444 224 aaKnown RBP16.43■□□□□ 0.22
SEC13-216ENST00000479868 RGS12O14924 1447 aa16.42■□□□□ 0.22
SEC13-216ENST00000479868 HAP1P54257 671 aaPredicted RBP16.42■□□□□ 0.22
SEC13-216ENST00000479868 RTL1A6NKG5 1358 aa16.42■□□□□ 0.22
SEC13-216ENST00000479868 TSPYL4Q9UJ04 414 aa16.42■□□□□ 0.22
SEC13-216ENST00000479868 NUCB1Q02818 461 aa16.41■□□□□ 0.22
SEC13-216ENST00000479868 ORAI2Q96SN7 254 aa16.41■□□□□ 0.22
SEC13-216ENST00000479868 LRRC37A3O60309 1634 aa16.41■□□□□ 0.22
SEC13-216ENST00000479868 SIRT2Q8IXJ6 389 aa16.41■□□□□ 0.22
SEC13-216ENST00000479868 USHBP1Q8N6Y0 703 aa16.41■□□□□ 0.22
SEC13-216ENST00000479868 GNAT3A8MTJ3 354 aa16.39■□□□□ 0.21
SEC13-216ENST00000479868 IP6K1Q92551 441 aa16.39■□□□□ 0.21
SEC13-216ENST00000479868 LNPKQ9C0E8 428 aa16.39■□□□□ 0.21
SEC13-216ENST00000479868 HTATSF1O43719 755 aaKnown RBP16.38■□□□□ 0.21
SEC13-216ENST00000479868 XPCQ01831 940 aaPredicted RBP16.38■□□□□ 0.21
SEC13-216ENST00000479868 INTS3Q68E01 1043 aaKnown RBP16.38■□□□□ 0.21
SEC13-216ENST00000479868 CHD1LQ86WJ1 897 aa16.38■□□□□ 0.21
SEC13-216ENST00000479868 MSH6P52701 1360 aa16.38■□□□□ 0.21
SEC13-216ENST00000479868 SLC4A2P04920 1241 aa16.37■□□□□ 0.21
SEC13-216ENST00000479868 IL17REQ8NFR9 667 aa16.37■□□□□ 0.21
SEC13-216ENST00000479868 GCC1Q96CN9 775 aa16.37■□□□□ 0.21
SEC13-216ENST00000479868 MAP3K5Q99683 1374 aa16.37■□□□□ 0.21
SEC13-216ENST00000479868 PTPRCP08575 1304 aa16.37■□□□□ 0.21
SEC13-216ENST00000479868 ZBTB7CA1YPR0 619 aa16.36■□□□□ 0.21
SEC13-216ENST00000479868 NBPF6Q5VWK0 638 aa16.36■□□□□ 0.21
SEC13-216ENST00000479868 NBPF4Q96M43 638 aa16.36■□□□□ 0.21
SEC13-216ENST00000479868 RGPD2P0DJD1 1756 aa16.36■□□□□ 0.21
SEC13-216ENST00000479868 ANKRD45Q5TZF3 282 aa16.36■□□□□ 0.21
SEC13-216ENST00000479868 PROSER2Q86WR7 435 aaPredicted RBP16.36■□□□□ 0.21
SEC13-216ENST00000479868 KCNH5Q8NCM2 988 aa16.36■□□□□ 0.21
SEC13-216ENST00000479868 PHRF1Q9P1Y6 1649 aaKnown RBP16.35■□□□□ 0.21
SEC13-216ENST00000479868 G2E3Q7L622 706 aa16.35■□□□□ 0.21
SEC13-216ENST00000479868 TBC1D32Q96NH3 1257 aa16.35■□□□□ 0.21
SEC13-216ENST00000479868 PLEKHG5O94827 1062 aa16.34■□□□□ 0.21
SEC13-216ENST00000479868 UPF2Q9HAU5 1272 aaKnown RBP16.34■□□□□ 0.21
SEC13-216ENST00000479868 GCP02774 474 aa16.33■□□□□ 0.2
SEC13-216ENST00000479868 TRPM3Q9HCF6 1732 aaPredicted RBP16.32■□□□□ 0.2
SEC13-216ENST00000479868 ATP10DQ9P241 1426 aa16.32■□□□□ 0.2
SEC13-216ENST00000479868 LRRC59Q96AG4 307 aaKnown RBP16.32■□□□□ 0.2
SEC13-216ENST00000479868 SLIT3O75094 1523 aa16.32■□□□□ 0.2
SEC13-216ENST00000479868 FAM208AQ9UK61 1670 aaKnown RBP16.32■□□□□ 0.2
SEC13-216ENST00000479868 LMOD2Q6P5Q4 547 aa16.31■□□□□ 0.2
SEC13-216ENST00000479868 C1orf167Q5SNV9 1468 aa16.31■□□□□ 0.2
SEC13-216ENST00000479868 F6X3S4 739 aa16.31■□□□□ 0.2
SEC13-216ENST00000479868 TAF7Q15545 349 aaPredicted RBP16.31■□□□□ 0.2
SEC13-216ENST00000479868 MEIS3Q99687 375 aa16.31■□□□□ 0.2
SEC13-216ENST00000479868 ARHGEF25Q86VW2 580 aa16.3■□□□□ 0.2
SEC13-216ENST00000479868 DNAJC5Q9H3Z4 198 aa16.3■□□□□ 0.2
SEC13-216ENST00000479868 MFAP1P55081 439 aaKnown RBP16.3■□□□□ 0.2
SEC13-216ENST00000479868 RTL5Q5HYW3 569 aaPredicted RBP16.3■□□□□ 0.2
SEC13-216ENST00000479868 C19orf44Q9H6X5 657 aa16.3■□□□□ 0.2
SEC13-216ENST00000479868 KRT28Q7Z3Y7 464 aa16.29■□□□□ 0.2
SEC13-216ENST00000479868 ANKRD44Q8N8A2 993 aa16.29■□□□□ 0.2
SEC13-216ENST00000479868 NECTIN2Q92692 538 aa16.29■□□□□ 0.2
SEC13-216ENST00000479868 STK31Q9BXU1 1019 aa16.29■□□□□ 0.2
SEC13-216ENST00000479868 CEMIPQ8WUJ3 1361 aa16.29■□□□□ 0.2
SEC13-216ENST00000479868 KIF1AQ12756 1690 aa16.29■□□□□ 0.2
SEC13-216ENST00000479868 CEP85Q6P2H3 762 aa16.29■□□□□ 0.2
SEC13-216ENST00000479868 SLC4A10Q6U841 1118 aa16.29■□□□□ 0.2
SEC13-216ENST00000479868 DCTPP1Q9H773 170 aa16.29■□□□□ 0.2
SEC13-216ENST00000479868 BMP2KLQ5H9B9 411 aa16.28■□□□□ 0.2
SEC13-216ENST00000479868 CCDC30Q5VVM6 783 aa16.28■□□□□ 0.2
SEC13-216ENST00000479868 BABAM1Q9NWV8 329 aa16.28■□□□□ 0.2
SEC13-216ENST00000479868 LGR6Q9HBX8 967 aa16.28■□□□□ 0.2
SEC13-216ENST00000479868 STRCP1A6NGW2 1772 aa16.28■□□□□ 0.2
SEC13-216ENST00000479868 CACNA1FO60840 1977 aa16.27■□□□□ 0.2
SEC13-216ENST00000479868 RPAP2Q8IXW5 612 aaPredicted RBP16.27■□□□□ 0.2
SEC13-216ENST00000479868 MED1Q15648 1581 aaPredicted RBP16.27■□□□□ 0.19
SEC13-216ENST00000479868 FLIIQ13045 1269 aa16.27■□□□□ 0.19
SEC13-216ENST00000479868 C22orf23Q9BZE7 217 aa16.27■□□□□ 0.19
SEC13-216ENST00000479868 AXIN2Q9Y2T1 843 aa16.26■□□□□ 0.19
SEC13-216ENST00000479868 LMO7Q8WWI1 1683 aa16.26■□□□□ 0.19
SEC13-216ENST00000479868 CCT4P50991 539 aaKnown RBP16.26■□□□□ 0.19
SEC13-216ENST00000479868 TMEM94Q12767 1356 aa16.25■□□□□ 0.19
SEC13-216ENST00000479868 FKBP5Q13451 457 aaPredicted RBP16.25■□□□□ 0.19
SEC13-216ENST00000479868 BECN1Q14457 450 aa16.25■□□□□ 0.19
SEC13-216ENST00000479868 ANKRD24Q8TF21 1146 aa16.25■□□□□ 0.19
SEC13-216ENST00000479868 RGPD5Q99666 1765 aa16.25■□□□□ 0.19
SEC13-216ENST00000479868 NCAPD2Q15021 1401 aa16.25■□□□□ 0.19
SEC13-216ENST00000479868 SOS1Q07889 1333 aaPredicted RBP16.25■□□□□ 0.19
SEC13-216ENST00000479868 ZNF530Q6P9A1 599 aaPredicted RBP16.24■□□□□ 0.19
SEC13-216ENST00000479868 ALS2Q96Q42 1657 aa16.24■□□□□ 0.19
SEC13-216ENST00000479868 MST1RQ04912 1400 aa16.24■□□□□ 0.19
SEC13-216ENST00000479868 KDM3BQ7LBC6 1761 aa16.24■□□□□ 0.19
SEC13-216ENST00000479868 PXDNQ92626 1479 aa16.24■□□□□ 0.19
SEC13-216ENST00000479868 AKAP4Q5JQC9 854 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms