RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 ITSN1Q15811 1721 aa22.48■■□□□ 1.19
CCM2-209ENST00000477605 PTPRCP08575 1304 aa22.47■■□□□ 1.19
CCM2-209ENST00000477605 EIF4A2Q14240 407 aaKnown RBP22.47■■□□□ 1.19
CCM2-209ENST00000477605 ANKRD44Q8N8A2 993 aa22.47■■□□□ 1.19
CCM2-209ENST00000477605 TTC21BQ7Z4L5 1316 aa22.47■■□□□ 1.19
CCM2-209ENST00000477605 PRR36Q9H6K5 1346 aa22.47■■□□□ 1.19
CCM2-209ENST00000477605 FAM83GA6ND36 823 aa22.46■■□□□ 1.19
CCM2-209ENST00000477605 K7ELQ4 463 aaPredicted RBP22.46■■□□□ 1.19
CCM2-209ENST00000477605 RAB3GAP1Q15042 981 aa22.46■■□□□ 1.19
CCM2-209ENST00000477605 SKOR2Q2VWA4 1001 aaPredicted RBP22.46■■□□□ 1.19
CCM2-209ENST00000477605 DLG5Q8TDM6 1919 aa22.46■■□□□ 1.19
CCM2-209ENST00000477605 TMEM2Q9UHN6 1383 aa22.45■■□□□ 1.19
CCM2-209ENST00000477605 LTKP29376 864 aa22.45■■□□□ 1.18
CCM2-209ENST00000477605 PLEKHM2Q8IWE5 1019 aa22.45■■□□□ 1.18
CCM2-209ENST00000477605 OVOS2A0A0J9YW53 1432 aa22.45■■□□□ 1.18
CCM2-209ENST00000477605 OVOS2Q6IE36 1432 aa22.45■■□□□ 1.18
CCM2-209ENST00000477605 XRCC6P12956 609 aaKnown RBP eCLIP22.44■■□□□ 1.18
CCM2-209ENST00000477605 MRE11P49959 708 aa22.44■■□□□ 1.18
CCM2-209ENST00000477605 SULT6B1Q6IMI4 303 aa22.44■■□□□ 1.18
CCM2-209ENST00000477605 USP31Q70CQ4 1352 aa22.43■■□□□ 1.18
CCM2-209ENST00000477605 DCTN1Q14203 1278 aa22.43■■□□□ 1.18
CCM2-209ENST00000477605 TNPO1Q92973 898 aaKnown RBP22.43■■□□□ 1.18
CCM2-209ENST00000477605 TTC22Q5TAA0 569 aa22.42■■□□□ 1.18
CCM2-209ENST00000477605 RGS12O14924 1447 aa22.42■■□□□ 1.18
CCM2-209ENST00000477605 ROBO2Q9HCK4 1378 aa22.41■■□□□ 1.18
CCM2-209ENST00000477605 ATP10DQ9P241 1426 aa22.4■■□□□ 1.18
CCM2-209ENST00000477605 GSPT1P15170 499 aaKnown RBP22.4■■□□□ 1.18
CCM2-209ENST00000477605 RABEP1Q15276 862 aa22.4■■□□□ 1.18
CCM2-209ENST00000477605 CLEC17AQ6ZS10 378 aa22.4■■□□□ 1.18
CCM2-209ENST00000477605 EID1Q9Y6B2 187 aa22.4■■□□□ 1.18
CCM2-209ENST00000477605 USP6P35125 1406 aa22.4■■□□□ 1.18
CCM2-209ENST00000477605 ADAMTS13Q76LX8 1427 aa22.4■■□□□ 1.18
CCM2-209ENST00000477605 ACEP12821 1306 aa22.4■■□□□ 1.18
CCM2-209ENST00000477605 HSP90AA1P07900 732 aaKnown RBP22.4■■□□□ 1.18
CCM2-209ENST00000477605 AEBP1Q8IUX7 1158 aa22.39■■□□□ 1.17
CCM2-209ENST00000477605 ARHGEF10O15013 1369 aa22.39■■□□□ 1.17
CCM2-209ENST00000477605 TOPAZ1Q8N9V7 1692 aa22.39■■□□□ 1.17
CCM2-209ENST00000477605 CEP85Q6P2H3 762 aa22.38■■□□□ 1.17
CCM2-209ENST00000477605 PLEKHG1Q9ULL1 1385 aa22.38■■□□□ 1.17
CCM2-209ENST00000477605 GZF1Q9H116 711 aaPredicted RBP22.38■■□□□ 1.17
CCM2-209ENST00000477605 CRB1P82279 1406 aa22.38■■□□□ 1.17
CCM2-209ENST00000477605 TTC21AQ8NDW8 1320 aa22.37■■□□□ 1.17
CCM2-209ENST00000477605 RTL1A6NKG5 1358 aa22.37■■□□□ 1.17
CCM2-209ENST00000477605 CASC1Q6TDU7 716 aa22.37■■□□□ 1.17
CCM2-209ENST00000477605 RGPD1P0DJD0 1748 aa22.36■■□□□ 1.17
CCM2-209ENST00000477605 ANO8Q9HCE9 1232 aaPredicted RBP22.36■■□□□ 1.17
CCM2-209ENST00000477605 SSH2Q76I76 1423 aa22.36■■□□□ 1.17
CCM2-209ENST00000477605 NALCNQ8IZF0 1738 aa22.35■■□□□ 1.17
CCM2-209ENST00000477605 HMMRO75330 724 aa22.35■■□□□ 1.17
CCM2-209ENST00000477605 CD2BP2O95400 341 aaKnown RBP22.34■■□□□ 1.17
CCM2-209ENST00000477605 USP26Q9BXU7 913 aa22.34■■□□□ 1.17
CCM2-209ENST00000477605 MCM10Q7L590 875 aa22.34■■□□□ 1.17
CCM2-209ENST00000477605 GOLGA6L22H0YM25 854 aa22.33■■□□□ 1.17
CCM2-209ENST00000477605 CCT4P50991 539 aaKnown RBP22.33■■□□□ 1.17
CCM2-209ENST00000477605 GRPEL1Q9HAV7 217 aa22.33■■□□□ 1.17
CCM2-209ENST00000477605 HSP90AB2PQ58FF8 381 aa22.32■■□□□ 1.16
CCM2-209ENST00000477605 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.32■■□□□ 1.16
CCM2-209ENST00000477605 MSH6P52701 1360 aa22.32■■□□□ 1.16
CCM2-209ENST00000477605 HTATSF1O43719 755 aaKnown RBP22.31■■□□□ 1.16
CCM2-209ENST00000477605 RBM42Q9BTD8 480 aaKnown RBP22.31■■□□□ 1.16
CCM2-209ENST00000477605 KRT24Q2M2I5 525 aa22.3■■□□□ 1.16
CCM2-209ENST00000477605 GAS2L2Q8NHY3 880 aa22.3■■□□□ 1.16
CCM2-209ENST00000477605 RTF1Q92541 710 aaKnown RBP22.3■■□□□ 1.16
CCM2-209ENST00000477605 OSBPL3Q9H4L5 887 aa22.3■■□□□ 1.16
CCM2-209ENST00000477605 STRCP1A6NGW2 1772 aa22.3■■□□□ 1.16
CCM2-209ENST00000477605 SBNO1A3KN83 1393 aa22.3■■□□□ 1.16
CCM2-209ENST00000477605 KDRP35968 1356 aa22.3■■□□□ 1.16
CCM2-209ENST00000477605 PEAK1Q9H792 1746 aa22.3■■□□□ 1.16
CCM2-209ENST00000477605 SLC4A2P04920 1241 aa22.3■■□□□ 1.16
CCM2-209ENST00000477605 REC8O95072 547 aa22.29■■□□□ 1.16
CCM2-209ENST00000477605 NUCB2P80303 420 aa22.29■■□□□ 1.16
CCM2-209ENST00000477605 C16orf71Q8IYS4 520 aaPredicted RBP22.29■■□□□ 1.16
CCM2-209ENST00000477605 FLT4P35916 1363 aa22.29■■□□□ 1.16
CCM2-209ENST00000477605 SDSP20132 328 aa22.29■■□□□ 1.16
CCM2-209ENST00000477605 MEIS3Q99687 375 aa22.29■■□□□ 1.16
CCM2-209ENST00000477605 CWC22Q9HCG8 908 aaKnown RBP22.29■■□□□ 1.16
CCM2-209ENST00000477605 SOS1Q07889 1333 aaPredicted RBP22.29■■□□□ 1.16
CCM2-209ENST00000477605 RRAGDQ9NQL2 400 aaPredicted RBP22.27■■□□□ 1.16
CCM2-209ENST00000477605 PTPRUQ92729 1446 aa22.27■■□□□ 1.15
CCM2-209ENST00000477605 TSPYL4Q9UJ04 414 aa22.26■■□□□ 1.15
CCM2-209ENST00000477605 MAP3K19Q56UN5 1328 aa22.26■■□□□ 1.15
CCM2-209ENST00000477605 IBTKQ9P2D0 1353 aaPredicted RBP22.26■■□□□ 1.15
CCM2-209ENST00000477605 PANK2Q9BZ23 570 aa22.26■■□□□ 1.15
CCM2-209ENST00000477605 ST18O60284 1047 aa22.25■■□□□ 1.15
CCM2-209ENST00000477605 MTHFSDQ2M296 383 aaKnown RBP22.25■■□□□ 1.15
CCM2-209ENST00000477605 IGSF1Q8N6C5 1336 aa22.25■■□□□ 1.15
CCM2-209ENST00000477605 SLC26A8Q96RN1 970 aa22.25■■□□□ 1.15
CCM2-209ENST00000477605 SSFA2P28290 1259 aa22.24■■□□□ 1.15
CCM2-209ENST00000477605 UBAP1LF5GYI3 381 aa22.24■■□□□ 1.15
CCM2-209ENST00000477605 KLHL40Q2TBA0 621 aa22.24■■□□□ 1.15
CCM2-209ENST00000477605 OTUD7AQ8TE49 926 aaPredicted RBP22.24■■□□□ 1.15
CCM2-209ENST00000477605 BABAM1Q9NWV8 329 aa22.24■■□□□ 1.15
CCM2-209ENST00000477605 ERC2O15083 957 aa22.23■■□□□ 1.15
CCM2-209ENST00000477605 BAG4O95429 457 aaKnown RBP22.23■■□□□ 1.15
CCM2-209ENST00000477605 GNAI2P04899 355 aa22.23■■□□□ 1.15
CCM2-209ENST00000477605 FOXD4L1Q9NU39 408 aa22.23■■□□□ 1.15
CCM2-209ENST00000477605 TBX22Q9Y458 520 aa22.23■■□□□ 1.15
CCM2-209ENST00000477605 CLCN1P35523 988 aa22.22■■□□□ 1.15
CCM2-209ENST00000477605 STK31Q9BXU1 1019 aa22.22■■□□□ 1.15
CCM2-209ENST00000477605 CYP2E1P05181 493 aaPredicted RBP22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms