RNA–Protein interactions for RNA: ENST00000477541.1

HLA-DMA-208, Transcript of major histocompatibility complex, class II, DM alpha, humanhuman

Gene HLA-DMA, Length 1,735 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMA-208ENST00000477541 DDX49Q9Y6V7 483 aaKnown RBP16.69■□□□□ 0.26
HLA-DMA-208ENST00000477541 NRKQ7Z2Y5 1582 aa16.69■□□□□ 0.26
HLA-DMA-208ENST00000477541 CEP170BQ9Y4F5 1589 aaPredicted RBP16.69■□□□□ 0.26
HLA-DMA-208ENST00000477541 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.68■□□□□ 0.26
HLA-DMA-208ENST00000477541 PLEKHM2Q8IWE5 1019 aa16.68■□□□□ 0.26
HLA-DMA-208ENST00000477541 CDK19Q9BWU1 502 aa16.68■□□□□ 0.26
HLA-DMA-208ENST00000477541 MON2Q7Z3U7 1717 aa16.68■□□□□ 0.26
HLA-DMA-208ENST00000477541 RIMS2Q9UQ26 1411 aa16.68■□□□□ 0.26
HLA-DMA-208ENST00000477541 MINK1Q8N4C8 1332 aaPredicted RBP16.68■□□□□ 0.26
HLA-DMA-208ENST00000477541 CD2BP2O95400 341 aaKnown RBP16.67■□□□□ 0.26
HLA-DMA-208ENST00000477541 SSFA2P28290 1259 aa16.67■□□□□ 0.26
HLA-DMA-208ENST00000477541 TWISTNBQ3B726 338 aaPredicted RBP16.67■□□□□ 0.26
HLA-DMA-208ENST00000477541 SETD1AO15047 1707 aaKnown RBP16.67■□□□□ 0.26
HLA-DMA-208ENST00000477541 ST18O60284 1047 aa16.67■□□□□ 0.26
HLA-DMA-208ENST00000477541 ANKRD44Q8N8A2 993 aa16.66■□□□□ 0.26
HLA-DMA-208ENST00000477541 USP26Q9BXU7 913 aa16.66■□□□□ 0.26
HLA-DMA-208ENST00000477541 MBIPQ9NS73 344 aa16.66■□□□□ 0.26
HLA-DMA-208ENST00000477541 OFD1O75665 1012 aa16.65■□□□□ 0.26
HLA-DMA-208ENST00000477541 REC8O95072 547 aa16.65■□□□□ 0.26
HLA-DMA-208ENST00000477541 MSNP26038 577 aaKnown RBP16.65■□□□□ 0.26
HLA-DMA-208ENST00000477541 MCM5P33992 734 aa16.65■□□□□ 0.26
HLA-DMA-208ENST00000477541 IL13P35225 146 aa16.65■□□□□ 0.26
HLA-DMA-208ENST00000477541 STK26Q9P289 416 aa16.65■□□□□ 0.26
HLA-DMA-208ENST00000477541 KIAA0232Q92628 1395 aa16.65■□□□□ 0.26
HLA-DMA-208ENST00000477541 ATP10DQ9P241 1426 aa16.65■□□□□ 0.26
HLA-DMA-208ENST00000477541 GSPT1P15170 499 aaKnown RBP16.65■□□□□ 0.26
HLA-DMA-208ENST00000477541 SAFB2Q14151 953 aaKnown RBP eCLIP16.65■□□□□ 0.26
HLA-DMA-208ENST00000477541 AKAP12Q02952 1782 aa16.64■□□□□ 0.25
HLA-DMA-208ENST00000477541 CABP1Q9NZU7 370 aa16.64■□□□□ 0.25
HLA-DMA-208ENST00000477541 PTPRCP08575 1304 aa16.64■□□□□ 0.25
HLA-DMA-208ENST00000477541 MCM2P49736 904 aa16.63■□□□□ 0.25
HLA-DMA-208ENST00000477541 PDLIM2Q96JY6 352 aa16.63■□□□□ 0.25
HLA-DMA-208ENST00000477541 LMBRD1Q9NUN5 540 aa16.62■□□□□ 0.25
HLA-DMA-208ENST00000477541 ITSN1Q15811 1721 aa16.62■□□□□ 0.25
HLA-DMA-208ENST00000477541 NUTM2DQ5VT03 806 aaPredicted RBP16.62■□□□□ 0.25
HLA-DMA-208ENST00000477541 TSPYL6Q8N831 410 aa16.62■□□□□ 0.25
HLA-DMA-208ENST00000477541 PHACTR3Q96KR7 559 aa16.62■□□□□ 0.25
HLA-DMA-208ENST00000477541 MAP7D2Q96T17 732 aa16.62■□□□□ 0.25
HLA-DMA-208ENST00000477541 PDCL3Q9H2J4 239 aa16.62■□□□□ 0.25
HLA-DMA-208ENST00000477541 C1orf115Q9H7X2 142 aa16.62■□□□□ 0.25
HLA-DMA-208ENST00000477541 ZNF500O60304 480 aaPredicted RBP16.61■□□□□ 0.25
HLA-DMA-208ENST00000477541 RBM42Q9BTD8 480 aaKnown RBP16.61■□□□□ 0.25
HLA-DMA-208ENST00000477541 MBD3O95983 291 aa16.6■□□□□ 0.25
HLA-DMA-208ENST00000477541 ZSCAN23Q3MJ62 389 aa16.6■□□□□ 0.25
HLA-DMA-208ENST00000477541 KLHL34Q8N239 644 aa16.6■□□□□ 0.25
HLA-DMA-208ENST00000477541 OSBPL3Q9H4L5 887 aa16.6■□□□□ 0.25
HLA-DMA-208ENST00000477541 NOL7Q9UMY1 257 aaKnown RBP16.6■□□□□ 0.25
HLA-DMA-208ENST00000477541 HMMRO75330 724 aa16.59■□□□□ 0.25
HLA-DMA-208ENST00000477541 CSPP1Q1MSJ5 1256 aa16.59■□□□□ 0.25
HLA-DMA-208ENST00000477541 RGS12O14924 1447 aa16.59■□□□□ 0.25
HLA-DMA-208ENST00000477541 A2ML1A8K2U0 1454 aa16.59■□□□□ 0.25
HLA-DMA-208ENST00000477541 MCTP1Q6DN14 999 aa16.59■□□□□ 0.25
HLA-DMA-208ENST00000477541 AK9Q5TCS8 1911 aa16.58■□□□□ 0.24
HLA-DMA-208ENST00000477541 EPB41L2O43491 1005 aaKnown RBP16.58■□□□□ 0.24
HLA-DMA-208ENST00000477541 KIAA1211Q6ZU35 1233 aa16.58■□□□□ 0.24
HLA-DMA-208ENST00000477541 SIRT1Q96EB6 747 aa16.58■□□□□ 0.24
HLA-DMA-208ENST00000477541 SSH2Q76I76 1423 aa16.57■□□□□ 0.24
HLA-DMA-208ENST00000477541 RTL1A6NKG5 1358 aa16.57■□□□□ 0.24
HLA-DMA-208ENST00000477541 ERC2O15083 957 aa16.57■□□□□ 0.24
HLA-DMA-208ENST00000477541 CEP85Q6P2H3 762 aa16.57■□□□□ 0.24
HLA-DMA-208ENST00000477541 C8orf58Q8NAV2 365 aa16.57■□□□□ 0.24
HLA-DMA-208ENST00000477541 FOXD4L1Q9NU39 408 aa16.57■□□□□ 0.24
HLA-DMA-208ENST00000477541 RGS17Q9UGC6 210 aaPredicted RBP16.57■□□□□ 0.24
HLA-DMA-208ENST00000477541 TUBGCP6Q96RT7 1819 aa16.57■□□□□ 0.24
HLA-DMA-208ENST00000477541 HMOX1P09601 288 aa16.56■□□□□ 0.24
HLA-DMA-208ENST00000477541 MTERF4Q7Z6M4 381 aaKnown RBP16.56■□□□□ 0.24
HLA-DMA-208ENST00000477541 IL17RAQ96F46 866 aa16.56■□□□□ 0.24
HLA-DMA-208ENST00000477541 LRSAM1Q6UWE0 723 aa16.56■□□□□ 0.24
HLA-DMA-208ENST00000477541 ARHGEF10O15013 1369 aa16.55■□□□□ 0.24
HLA-DMA-208ENST00000477541 SDSP20132 328 aa16.55■□□□□ 0.24
HLA-DMA-208ENST00000477541 ANAPC15P60006 121 aa16.55■□□□□ 0.24
HLA-DMA-208ENST00000477541 CAVIN1Q6NZI2 390 aaKnown RBP16.55■□□□□ 0.24
HLA-DMA-208ENST00000477541 COG3Q96JB2 828 aa16.55■□□□□ 0.24
HLA-DMA-208ENST00000477541 TECPR2O15040 1411 aa16.55■□□□□ 0.24
HLA-DMA-208ENST00000477541 N4BP2Q86UW6 1770 aaPredicted RBP16.54■□□□□ 0.24
HLA-DMA-208ENST00000477541 CHL1O00533 1208 aa16.54■□□□□ 0.24
HLA-DMA-208ENST00000477541 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.54■□□□□ 0.24
HLA-DMA-208ENST00000477541 SYAP1Q96A49 352 aaPredicted RBP16.54■□□□□ 0.24
HLA-DMA-208ENST00000477541 INTS4Q96HW7 963 aaKnown RBP16.54■□□□□ 0.24
HLA-DMA-208ENST00000477541 THUMPD2Q9BTF0 503 aaKnown RBP16.54■□□□□ 0.24
HLA-DMA-208ENST00000477541 CCDC39Q9UFE4 941 aa16.54■□□□□ 0.24
HLA-DMA-208ENST00000477541 RGPD1P0DJD0 1748 aa16.54■□□□□ 0.24
HLA-DMA-208ENST00000477541 MCCP23508 829 aa16.53■□□□□ 0.24
HLA-DMA-208ENST00000477541 EMILIN1Q9Y6C2 1016 aa16.53■□□□□ 0.24
HLA-DMA-208ENST00000477541 WASLO00401 505 aaPredicted RBP16.53■□□□□ 0.24
HLA-DMA-208ENST00000477541 NALCNQ8IZF0 1738 aa16.53■□□□□ 0.24
HLA-DMA-208ENST00000477541 CACNA1FO60840 1977 aa16.52■□□□□ 0.24
HLA-DMA-208ENST00000477541 ZKSCAN5Q9Y2L8 839 aa16.52■□□□□ 0.24
HLA-DMA-208ENST00000477541 MSH6P52701 1360 aa16.52■□□□□ 0.23
HLA-DMA-208ENST00000477541 CCT4P50991 539 aaKnown RBP16.51■□□□□ 0.23
HLA-DMA-208ENST00000477541 CUL4AQ13619 759 aa16.51■□□□□ 0.23
HLA-DMA-208ENST00000477541 NRXN3Q9Y4C0 1643 aa16.51■□□□□ 0.23
HLA-DMA-208ENST00000477541 PHF14O94880 888 aa16.5■□□□□ 0.23
HLA-DMA-208ENST00000477541 RBSNQ9H1K0 784 aa16.5■□□□□ 0.23
HLA-DMA-208ENST00000477541 ELL2O00472 640 aaPredicted RBP16.5■□□□□ 0.23
HLA-DMA-208ENST00000477541 NCLP19338 710 aaKnown RBP16.5■□□□□ 0.23
HLA-DMA-208ENST00000477541 AOX1Q06278 1338 aa16.49■□□□□ 0.23
HLA-DMA-208ENST00000477541 SOS1Q07889 1333 aaPredicted RBP16.49■□□□□ 0.23
HLA-DMA-208ENST00000477541 PRPF40AO75400 957 aaKnown RBP16.49■□□□□ 0.23
HLA-DMA-208ENST00000477541 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms