RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 KDM5DQ9BY66 1539 aa10.59□□□□□ -0.71
CCDC88A-213ENST00000476903 MYO3AQ8NEV4 1616 aa10.59□□□□□ -0.71
CCDC88A-213ENST00000476903 KIF3BO15066 747 aa10.59□□□□□ -0.71
CCDC88A-213ENST00000476903 WNT7BP56706 349 aa10.59□□□□□ -0.71
CCDC88A-213ENST00000476903 ZNF142P52746 1687 aaPredicted RBP10.59□□□□□ -0.71
CCDC88A-213ENST00000476903 EIF2AK4Q9P2K8 1649 aaKnown RBP10.58□□□□□ -0.72
CCDC88A-213ENST00000476903 SIAH2O43255 324 aa10.58□□□□□ -0.72
CCDC88A-213ENST00000476903 RNF17Q9BXT8 1623 aaKnown RBP10.58□□□□□ -0.72
CCDC88A-213ENST00000476903 PTPRKQ15262 1439 aa10.58□□□□□ -0.72
CCDC88A-213ENST00000476903 SHANK2Q9UPX8 1470 aa10.57□□□□□ -0.72
CCDC88A-213ENST00000476903 KDM4AO75164 1064 aa10.57□□□□□ -0.72
CCDC88A-213ENST00000476903 DNMT1P26358 1616 aaKnown RBP10.57□□□□□ -0.72
CCDC88A-213ENST00000476903 FGD6Q6ZV73 1430 aa10.57□□□□□ -0.72
CCDC88A-213ENST00000476903 ZC3H13Q5T200 1668 aaKnown RBP10.57□□□□□ -0.72
CCDC88A-213ENST00000476903 TCOF1Q13428 1488 aaKnown RBP10.56□□□□□ -0.72
CCDC88A-213ENST00000476903 TRIM46Q7Z4K8 759 aa10.56□□□□□ -0.72
CCDC88A-213ENST00000476903 NXF1Q9UBU9 619 aaKnown RBP10.56□□□□□ -0.72
CCDC88A-213ENST00000476903 DUOX2Q9NRD8 1548 aa10.56□□□□□ -0.72
CCDC88A-213ENST00000476903 CEP170BQ9Y4F5 1589 aaPredicted RBP10.56□□□□□ -0.72
CCDC88A-213ENST00000476903 GMPRP36959 345 aa10.55□□□□□ -0.72
CCDC88A-213ENST00000476903 CCDC24Q8N4L8 307 aa10.55□□□□□ -0.72
CCDC88A-213ENST00000476903 NCOA1Q15788 1441 aa10.55□□□□□ -0.72
CCDC88A-213ENST00000476903 WASHC2CQ9Y4E1 1318 aa10.55□□□□□ -0.72
CCDC88A-213ENST00000476903 PZPP20742 1482 aa10.55□□□□□ -0.72
CCDC88A-213ENST00000476903 CAMSAP1Q5T5Y3 1602 aa10.55□□□□□ -0.72
CCDC88A-213ENST00000476903 ABCC5O15440 1437 aa10.54□□□□□ -0.72
CCDC88A-213ENST00000476903 DAPK1P53355 1430 aa10.54□□□□□ -0.72
CCDC88A-213ENST00000476903 PTPRTO14522 1441 aa10.53□□□□□ -0.72
CCDC88A-213ENST00000476903 ALDH1A1P00352 501 aa10.53□□□□□ -0.72
CCDC88A-213ENST00000476903 PTCRAQ6ISU1 281 aaPredicted RBP10.53□□□□□ -0.72
CCDC88A-213ENST00000476903 FBXO41Q8TF61 875 aa10.53□□□□□ -0.72
CCDC88A-213ENST00000476903 CEP152O94986 1710 aa10.53□□□□□ -0.72
CCDC88A-213ENST00000476903 KIF15Q9NS87 1388 aa10.52□□□□□ -0.72
CCDC88A-213ENST00000476903 MROH1Q8NDA8 1641 aa10.52□□□□□ -0.73
CCDC88A-213ENST00000476903 HOXA2O43364 376 aa10.52□□□□□ -0.73
CCDC88A-213ENST00000476903 PLA2R1Q13018 1463 aa10.52□□□□□ -0.73
CCDC88A-213ENST00000476903 ABCC3O15438 1527 aa10.52□□□□□ -0.73
CCDC88A-213ENST00000476903 TNRQ92752 1358 aa10.52□□□□□ -0.73
CCDC88A-213ENST00000476903 ERBINQ96RT1 1412 aa10.51□□□□□ -0.73
CCDC88A-213ENST00000476903 CFAP65Q6ZU64 1925 aaKnown RBP10.51□□□□□ -0.73
CCDC88A-213ENST00000476903 A2ML1A8K2U0 1454 aa10.51□□□□□ -0.73
CCDC88A-213ENST00000476903 LOC100996750A0A140TA64 210 aa10.51□□□□□ -0.73
CCDC88A-213ENST00000476903 BMP1P13497 986 aa10.51□□□□□ -0.73
CCDC88A-213ENST00000476903 USP46P62068 366 aa10.51□□□□□ -0.73
CCDC88A-213ENST00000476903 GPIHBP1Q8IV16 184 aa10.51□□□□□ -0.73
CCDC88A-213ENST00000476903 SLC16A10Q8TF71 515 aa10.51□□□□□ -0.73
CCDC88A-213ENST00000476903 KRTAP4-6Q9BYQ5 205 aa10.51□□□□□ -0.73
CCDC88A-213ENST00000476903 PRDM15P57071 1507 aaPredicted RBP10.5□□□□□ -0.73
CCDC88A-213ENST00000476903 JUNDP17535 347 aa10.5□□□□□ -0.73
CCDC88A-213ENST00000476903 GUCA2AQ02747 115 aa10.5□□□□□ -0.73
CCDC88A-213ENST00000476903 NPAS3Q8IXF0 933 aa10.5□□□□□ -0.73
CCDC88A-213ENST00000476903 SYMPKQ92797 1274 aaKnown RBP10.5□□□□□ -0.73
CCDC88A-213ENST00000476903 RRP7BPQ9NSQ0 103 aa10.5□□□□□ -0.73
CCDC88A-213ENST00000476903 DEPDC5O75140 1603 aa10.5□□□□□ -0.73
CCDC88A-213ENST00000476903 ANKRD30AQ9BXX3 1397 aa10.5□□□□□ -0.73
CCDC88A-213ENST00000476903 POLR1AO95602 1720 aaPredicted RBP10.5□□□□□ -0.73
CCDC88A-213ENST00000476903 FBXO31Q5XUX0 539 aaPredicted RBP10.49□□□□□ -0.73
CCDC88A-213ENST00000476903 ZSCAN1Q8NBB4 408 aa10.49□□□□□ -0.73
CCDC88A-213ENST00000476903 NLRP1Q9C000 1473 aa10.49□□□□□ -0.73
CCDC88A-213ENST00000476903 H3BM21 787 aa10.48□□□□□ -0.73
CCDC88A-213ENST00000476903 ERBB4Q15303 1308 aa10.48□□□□□ -0.73
CCDC88A-213ENST00000476903 ADGRL2O95490 1459 aa10.48□□□□□ -0.73
CCDC88A-213ENST00000476903 SPATA31D1Q6ZQQ2 1576 aa10.48□□□□□ -0.73
CCDC88A-213ENST00000476903 VEGFBP49765 207 aa10.47□□□□□ -0.73
CCDC88A-213ENST00000476903 MAP2K5Q13163 448 aa10.47□□□□□ -0.73
CCDC88A-213ENST00000476903 FAM50AQ14320 339 aaKnown RBP10.47□□□□□ -0.73
CCDC88A-213ENST00000476903 CHIC2Q9UKJ5 165 aa10.47□□□□□ -0.73
CCDC88A-213ENST00000476903 CAPN5O15484 640 aaPredicted RBP10.46□□□□□ -0.73
CCDC88A-213ENST00000476903 IRF7Q92985 503 aa10.46□□□□□ -0.73
CCDC88A-213ENST00000476903 ERVK-7P63135 1459 aa10.46□□□□□ -0.74
CCDC88A-213ENST00000476903 UGGT1Q9NYU2 1555 aa10.46□□□□□ -0.74
CCDC88A-213ENST00000476903 KANK1Q14678 1352 aa10.45□□□□□ -0.74
CCDC88A-213ENST00000476903 FAM181BA6NEQ2 426 aa10.45□□□□□ -0.74
CCDC88A-213ENST00000476903 IRF6O14896 467 aa10.45□□□□□ -0.74
CCDC88A-213ENST00000476903 MDM2Q00987 491 aaPredicted RBP10.45□□□□□ -0.74
CCDC88A-213ENST00000476903 LTBP4Q8N2S1 1624 aa10.44□□□□□ -0.74
CCDC88A-213ENST00000476903 ARHGAP31Q2M1Z3 1444 aa10.44□□□□□ -0.74
CCDC88A-213ENST00000476903 SH3BP2P78314 561 aa10.44□□□□□ -0.74
CCDC88A-213ENST00000476903 NUDT12Q9BQG2 462 aa10.44□□□□□ -0.74
CCDC88A-213ENST00000476903 VWDEQ8N2E2 1590 aa10.43□□□□□ -0.74
CCDC88A-213ENST00000476903 THEMISQ8N1K5 641 aaPredicted RBP10.43□□□□□ -0.74
CCDC88A-213ENST00000476903 EHBP1Q8NDI1 1231 aa10.43□□□□□ -0.74
CCDC88A-213ENST00000476903 UBR1Q8IWV7 1749 aa10.43□□□□□ -0.74
CCDC88A-213ENST00000476903 NEURL4Q96JN8 1562 aa10.43□□□□□ -0.74
CCDC88A-213ENST00000476903 LMTK2Q8IWU2 1503 aa10.43□□□□□ -0.74
CCDC88A-213ENST00000476903 IQSEC2Q5JU85 1478 aa10.42□□□□□ -0.74
CCDC88A-213ENST00000476903 RETREG3Q86VR2 466 aa10.42□□□□□ -0.74
CCDC88A-213ENST00000476903 ANKRD50Q9ULJ7 1429 aa10.41□□□□□ -0.74
CCDC88A-213ENST00000476903 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.41□□□□□ -0.74
CCDC88A-213ENST00000476903 ANKLE2Q86XL3 938 aa10.41□□□□□ -0.74
CCDC88A-213ENST00000476903 ZFP42Q96MM3 310 aa10.41□□□□□ -0.74
CCDC88A-213ENST00000476903 WASF2Q9Y6W5 498 aa10.41□□□□□ -0.74
CCDC88A-213ENST00000476903 IQGAP1P46940 1657 aa10.41□□□□□ -0.74
CCDC88A-213ENST00000476903 ZNF335Q9H4Z2 1342 aaPredicted RBP10.4□□□□□ -0.74
CCDC88A-213ENST00000476903 EFCAB6Q5THR3 1501 aa10.4□□□□□ -0.74
CCDC88A-213ENST00000476903 PCDHGC3Q9UN70 934 aa10.4□□□□□ -0.74
CCDC88A-213ENST00000476903 ROCK1Q13464 1354 aa10.39□□□□□ -0.75
CCDC88A-213ENST00000476903 KDM5AP29375 1690 aaKnown RBP10.39□□□□□ -0.75
CCDC88A-213ENST00000476903 MED14O60244 1454 aa10.39□□□□□ -0.75
CCDC88A-213ENST00000476903 FAM217BQ9NTX9 383 aaPredicted RBP10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms