RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 COL3A1P02461 1466 aaPredicted RBP13.13□□□□□ -0.31
HDAC3-208ENST00000476739 TATP17735 454 aaPredicted RBP13.13□□□□□ -0.31
HDAC3-208ENST00000476739 AEBP1Q8IUX7 1158 aa13.13□□□□□ -0.31
HDAC3-208ENST00000476739 ZCRB1Q8TBF4 217 aaKnown RBP13.13□□□□□ -0.31
HDAC3-208ENST00000476739 BCL9O00512 1426 aa13.13□□□□□ -0.31
HDAC3-208ENST00000476739 KCNQ2O43526 872 aa13.12□□□□□ -0.31
HDAC3-208ENST00000476739 ACSBG1Q96GR2 724 aa13.12□□□□□ -0.31
HDAC3-208ENST00000476739 PARD3Q8TEW0 1356 aa13.11□□□□□ -0.31
HDAC3-208ENST00000476739 ZNF316A6NFI3 1004 aaPredicted RBP13.11□□□□□ -0.31
HDAC3-208ENST00000476739 EN1Q05925 392 aaPredicted RBP13.11□□□□□ -0.31
HDAC3-208ENST00000476739 SF3B2Q13435 895 aaKnown RBP13.11□□□□□ -0.31
HDAC3-208ENST00000476739 PKD1L3Q7Z443 1732 aa13.1□□□□□ -0.31
HDAC3-208ENST00000476739 CYP27B1O15528 508 aa13.1□□□□□ -0.31
HDAC3-208ENST00000476739 DIAPH1O60610 1272 aaKnown RBP13.1□□□□□ -0.31
HDAC3-208ENST00000476739 APBA3O96018 575 aa13.1□□□□□ -0.31
HDAC3-208ENST00000476739 SULT6B1Q6IMI4 303 aa13.1□□□□□ -0.31
HDAC3-208ENST00000476739 BAG6P46379 1132 aa13.09□□□□□ -0.31
HDAC3-208ENST00000476739 EZH2Q15910 746 aaKnown RBP13.09□□□□□ -0.31
HDAC3-208ENST00000476739 KAT6BQ8WYB5 2073 aa13.09□□□□□ -0.31
HDAC3-208ENST00000476739 HMOX1P09601 288 aa13.08□□□□□ -0.32
HDAC3-208ENST00000476739 CAMKK2Q96RR4 588 aa13.08□□□□□ -0.32
HDAC3-208ENST00000476739 BCL11BQ9C0K0 894 aaPredicted RBP13.08□□□□□ -0.32
HDAC3-208ENST00000476739 NHSQ6T4R5 1651 aa13.08□□□□□ -0.32
HDAC3-208ENST00000476739 PCDH11XQ9BZA7 1347 aa13.08□□□□□ -0.32
HDAC3-208ENST00000476739 PCDH11YQ9BZA8 1340 aa13.08□□□□□ -0.32
HDAC3-208ENST00000476739 DOT1LQ8TEK3 1739 aa13.08□□□□□ -0.32
HDAC3-208ENST00000476739 KDRP35968 1356 aa13.07□□□□□ -0.32
HDAC3-208ENST00000476739 SPG7Q9UQ90 795 aa13.06□□□□□ -0.32
HDAC3-208ENST00000476739 TOGARAM1Q9Y4F4 1720 aa13.05□□□□□ -0.32
HDAC3-208ENST00000476739 BTAF1O14981 1849 aa13.05□□□□□ -0.32
HDAC3-208ENST00000476739 U2SURPO15042 1029 aaKnown RBP13.05□□□□□ -0.32
HDAC3-208ENST00000476739 PRIM1P49642 420 aaKnown RBP13.05□□□□□ -0.32
HDAC3-208ENST00000476739 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.05□□□□□ -0.32
HDAC3-208ENST00000476739 PHKG2P15735 406 aa13.04□□□□□ -0.32
HDAC3-208ENST00000476739 RALBP1Q15311 655 aa13.04□□□□□ -0.32
HDAC3-208ENST00000476739 SYTL4Q96C24 671 aaPredicted RBP13.04□□□□□ -0.32
HDAC3-208ENST00000476739 CFAP53Q96M91 514 aa13.04□□□□□ -0.32
HDAC3-208ENST00000476739 RREB1Q92766 1687 aa13.03□□□□□ -0.32
HDAC3-208ENST00000476739 PLSCR1O15162 318 aa13.03□□□□□ -0.32
HDAC3-208ENST00000476739 NKX1-1Q15270 411 aaPredicted RBP13.03□□□□□ -0.32
HDAC3-208ENST00000476739 PLEKHO1Q53GL0 409 aaPredicted RBP13.03□□□□□ -0.32
HDAC3-208ENST00000476739 IFNL2Q8IZJ0 200 aa13.03□□□□□ -0.32
HDAC3-208ENST00000476739 PROM2Q8N271 834 aa13.03□□□□□ -0.32
HDAC3-208ENST00000476739 ZNF530Q6P9A1 599 aaPredicted RBP13.02□□□□□ -0.33
HDAC3-208ENST00000476739 PRKRIP1Q9H875 184 aaPredicted RBP13.02□□□□□ -0.33
HDAC3-208ENST00000476739 PLEKHG2Q9H7P9 1386 aa13.02□□□□□ -0.33
HDAC3-208ENST00000476739 NUP188Q5SRE5 1749 aa13.02□□□□□ -0.33
HDAC3-208ENST00000476739 ITGB4P16144 1822 aa13.02□□□□□ -0.33
HDAC3-208ENST00000476739 MTHFSDQ2M296 383 aaKnown RBP13.01□□□□□ -0.33
HDAC3-208ENST00000476739 AMOTQ4VCS5 1084 aa13.01□□□□□ -0.33
HDAC3-208ENST00000476739 MYBBP1AQ9BQG0 1328 aaKnown RBP13.01□□□□□ -0.33
HDAC3-208ENST00000476739 RGPD3A6NKT7 1758 aaPredicted RBP13.01□□□□□ -0.33
HDAC3-208ENST00000476739 RGPD4Q7Z3J3 1758 aa13.01□□□□□ -0.33
HDAC3-208ENST00000476739 KDM6AO15550 1401 aaPredicted RBP13□□□□□ -0.33
HDAC3-208ENST00000476739 U2AF1L5P0DN76 240 aaPredicted RBP13□□□□□ -0.33
HDAC3-208ENST00000476739 U2AF1Q01081 240 aaKnown RBP eCLIP13□□□□□ -0.33
HDAC3-208ENST00000476739 MPRIPQ6WCQ1 1025 aa13□□□□□ -0.33
HDAC3-208ENST00000476739 PHACTR3Q96KR7 559 aa13□□□□□ -0.33
HDAC3-208ENST00000476739 RSPH6AQ9H0K4 717 aa13□□□□□ -0.33
HDAC3-208ENST00000476739 PRKAR2BP31323 418 aa12.99□□□□□ -0.33
HDAC3-208ENST00000476739 TXNRD1Q16881 649 aa12.99□□□□□ -0.33
HDAC3-208ENST00000476739 NUDCQ9Y266 331 aa12.99□□□□□ -0.33
HDAC3-208ENST00000476739 KCNQ4P56696 695 aa12.98□□□□□ -0.33
HDAC3-208ENST00000476739 PIGBQ92521 554 aa12.98□□□□□ -0.33
HDAC3-208ENST00000476739 PSDA5PKW4 1024 aaPredicted RBP12.97□□□□□ -0.33
HDAC3-208ENST00000476739 C1orf141Q5JVX7 400 aa12.97□□□□□ -0.33
HDAC3-208ENST00000476739 DCAF5Q96JK2 942 aa12.97□□□□□ -0.33
HDAC3-208ENST00000476739 LGR6Q9HBX8 967 aa12.97□□□□□ -0.33
HDAC3-208ENST00000476739 LRRC4BQ9NT99 713 aa12.97□□□□□ -0.33
HDAC3-208ENST00000476739 LY75O60449 1722 aa12.96□□□□□ -0.33
HDAC3-208ENST00000476739 FCHSD2O94868 740 aa12.96□□□□□ -0.33
HDAC3-208ENST00000476739 AKAP4Q5JQC9 854 aa12.96□□□□□ -0.33
HDAC3-208ENST00000476739 ANO8Q9HCE9 1232 aaPredicted RBP12.96□□□□□ -0.33
HDAC3-208ENST00000476739 VIRMAQ69YN4 1812 aaKnown RBP12.95□□□□□ -0.34
HDAC3-208ENST00000476739 SCN11AQ9UI33 1791 aa12.95□□□□□ -0.34
HDAC3-208ENST00000476739 HSP90AB1P08238 724 aaKnown RBP12.95□□□□□ -0.34
HDAC3-208ENST00000476739 R3HDM1Q15032 1099 aaKnown RBP12.95□□□□□ -0.34
HDAC3-208ENST00000476739 TMOD3Q9NYL9 352 aa12.95□□□□□ -0.34
HDAC3-208ENST00000476739 ASAP1Q9ULH1 1129 aa12.95□□□□□ -0.34
HDAC3-208ENST00000476739 ERVV-2B6SEH9 535 aa12.94□□□□□ -0.34
HDAC3-208ENST00000476739 RNMTO43148 476 aaKnown RBP12.94□□□□□ -0.34
HDAC3-208ENST00000476739 CCDC184Q52MB2 194 aa12.94□□□□□ -0.34
HDAC3-208ENST00000476739 PLEKHF1Q96S99 279 aa12.94□□□□□ -0.34
HDAC3-208ENST00000476739 PAPPAQ13219 1627 aa12.94□□□□□ -0.34
HDAC3-208ENST00000476739 PALLDQ8WX93 1383 aa12.94□□□□□ -0.34
HDAC3-208ENST00000476739 ADAMTS7Q9UKP4 1686 aa12.93□□□□□ -0.34
HDAC3-208ENST00000476739 NFATC2IPQ8NCF5 419 aa12.93□□□□□ -0.34
HDAC3-208ENST00000476739 ATG3Q9NT62 314 aa12.93□□□□□ -0.34
HDAC3-208ENST00000476739 CABP4P57796 275 aa12.92□□□□□ -0.34
HDAC3-208ENST00000476739 NBPF14Q5TI25 921 aa12.92□□□□□ -0.34
HDAC3-208ENST00000476739 IL17REQ8NFR9 667 aa12.92□□□□□ -0.34
HDAC3-208ENST00000476739 GAS2L2Q8NHY3 880 aa12.92□□□□□ -0.34
HDAC3-208ENST00000476739 CCNL1Q9UK58 526 aaPredicted RBP12.92□□□□□ -0.34
HDAC3-208ENST00000476739 MAP3K5Q99683 1374 aa12.92□□□□□ -0.34
HDAC3-208ENST00000476739 ZNF827Q17R98 1081 aa12.91□□□□□ -0.34
HDAC3-208ENST00000476739 SLC27A3Q5K4L6 730 aa12.91□□□□□ -0.34
HDAC3-208ENST00000476739 PDGFDQ9GZP0 370 aaPredicted RBP12.91□□□□□ -0.34
HDAC3-208ENST00000476739 MRC1P22897 1456 aa12.91□□□□□ -0.34
HDAC3-208ENST00000476739 GNAT3A8MTJ3 354 aa12.9□□□□□ -0.34
HDAC3-208ENST00000476739 ANP32CO43423 234 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms