RNA–Protein interactions for RNA: ENST00000475639.5

U2AF1-209, Transcript of U2 small nuclear RNA auxiliary factor 1, humanhuman

TSL 1 (best)

Gene U2AF1, Length 4,694 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1-209ENST00000475639 STK11IPQ8N1F8 1099 aa13.71□□□□□ -0.21
U2AF1-209ENST00000475639 C9orf84Q5VXU9 1444 aa13.71□□□□□ -0.21
U2AF1-209ENST00000475639 CCDC141Q6ZP82 1450 aa13.71□□□□□ -0.21
U2AF1-209ENST00000475639 TBC1D9Q6ZT07 1266 aa13.71□□□□□ -0.22
U2AF1-209ENST00000475639 PLA2R1Q13018 1463 aa13.71□□□□□ -0.22
U2AF1-209ENST00000475639 RNF17Q9BXT8 1623 aaKnown RBP13.71□□□□□ -0.22
U2AF1-209ENST00000475639 CAGE1Q8TC20 777 aa13.7□□□□□ -0.22
U2AF1-209ENST00000475639 VPS37CA5D8V6 355 aaPredicted RBP13.7□□□□□ -0.22
U2AF1-209ENST00000475639 GGT6Q6P531 493 aa13.7□□□□□ -0.22
U2AF1-209ENST00000475639 TRIM27P14373 513 aa13.69□□□□□ -0.22
U2AF1-209ENST00000475639 AXDND1Q5T1B0 1012 aaPredicted RBP13.69□□□□□ -0.22
U2AF1-209ENST00000475639 TTC12Q9H892 705 aaPredicted RBP13.69□□□□□ -0.22
U2AF1-209ENST00000475639 ZDHHC9Q9Y397 364 aa13.69□□□□□ -0.22
U2AF1-209ENST00000475639 CFAP74Q9C0B2 1584 aa13.69□□□□□ -0.22
U2AF1-209ENST00000475639 LEKR1Q6ZMV7 388 aa13.69□□□□□ -0.22
U2AF1-209ENST00000475639 SPTLC3Q9NUV7 552 aa13.69□□□□□ -0.22
U2AF1-209ENST00000475639 IQSEC2Q5JU85 1478 aa13.69□□□□□ -0.22
U2AF1-209ENST00000475639 CT47B1P0C2W7 299 aaPredicted RBP13.69□□□□□ -0.22
U2AF1-209ENST00000475639 TCP11L2Q8N4U5 519 aa13.69□□□□□ -0.22
U2AF1-209ENST00000475639 SDF4Q9BRK5 362 aa13.69□□□□□ -0.22
U2AF1-209ENST00000475639 MAPK8IP2Q13387 824 aaPredicted RBP13.69□□□□□ -0.22
U2AF1-209ENST00000475639 CHD1LQ86WJ1 897 aa13.69□□□□□ -0.22
U2AF1-209ENST00000475639 NAT10Q9H0A0 1025 aaKnown RBP13.69□□□□□ -0.22
U2AF1-209ENST00000475639 PBRM1Q86U86 1689 aa13.68□□□□□ -0.22
U2AF1-209ENST00000475639 NUP160Q12769 1436 aa13.68□□□□□ -0.22
U2AF1-209ENST00000475639 EZRP15311 586 aaKnown RBP13.68□□□□□ -0.22
U2AF1-209ENST00000475639 WDR63Q8IWG1 891 aa13.68□□□□□ -0.22
U2AF1-209ENST00000475639 NGDNQ8NEJ9 315 aaKnown RBP13.68□□□□□ -0.22
U2AF1-209ENST00000475639 SMC3Q9UQE7 1217 aa13.68□□□□□ -0.22
U2AF1-209ENST00000475639 TROQ12816 1431 aaPredicted RBP13.68□□□□□ -0.22
U2AF1-209ENST00000475639 CDC42BPAQ5VT25 1732 aa13.68□□□□□ -0.22
U2AF1-209ENST00000475639 EPS15P42566 896 aa13.68□□□□□ -0.22
U2AF1-209ENST00000475639 DDX19BQ9UMR2 479 aa13.68□□□□□ -0.22
U2AF1-209ENST00000475639 ERICH2A1L162 156 aa13.68□□□□□ -0.22
U2AF1-209ENST00000475639 FEZ1Q99689 392 aa13.67□□□□□ -0.22
U2AF1-209ENST00000475639 SHANK2Q9UPX8 1470 aa13.67□□□□□ -0.22
U2AF1-209ENST00000475639 ZGPATQ8N5A5 531 aaKnown RBP13.67□□□□□ -0.22
U2AF1-209ENST00000475639 INCENPQ9NQS7 918 aa13.67□□□□□ -0.22
U2AF1-209ENST00000475639 RIOK3O14730 519 aaKnown RBP13.67□□□□□ -0.22
U2AF1-209ENST00000475639 RSPH4AQ5TD94 716 aa13.67□□□□□ -0.22
U2AF1-209ENST00000475639 ANKRD18AQ8IVF6 992 aa13.67□□□□□ -0.22
U2AF1-209ENST00000475639 SHPRHQ149N8 1683 aa13.67□□□□□ -0.22
U2AF1-209ENST00000475639 OLFM4Q6UX06 510 aa13.66□□□□□ -0.22
U2AF1-209ENST00000475639 USP8P40818 1118 aa13.66□□□□□ -0.22
U2AF1-209ENST00000475639 RUNDC1Q96C34 613 aa13.66□□□□□ -0.22
U2AF1-209ENST00000475639 TSPY26PQ9H489 355 aa13.66□□□□□ -0.22
U2AF1-209ENST00000475639 ZBTB40Q9NUA8 1239 aa13.66□□□□□ -0.22
U2AF1-209ENST00000475639 OGFRQ9NZT2 677 aa13.66□□□□□ -0.22
U2AF1-209ENST00000475639 SLFN14P0C7P3 912 aa13.66□□□□□ -0.22
U2AF1-209ENST00000475639 POLR3AO14802 1390 aaPredicted RBP13.66□□□□□ -0.22
U2AF1-209ENST00000475639 KIAA0754O94854 1291 aa13.66□□□□□ -0.22
U2AF1-209ENST00000475639 ERLIN2O94905 339 aa13.66□□□□□ -0.22
U2AF1-209ENST00000475639 NFXL1Q6ZNB6 911 aa13.66□□□□□ -0.22
U2AF1-209ENST00000475639 IQGAP1P46940 1657 aa13.65□□□□□ -0.22
U2AF1-209ENST00000475639 CTIFO43310 598 aaKnown RBP13.65□□□□□ -0.22
U2AF1-209ENST00000475639 TEFQ10587 303 aa13.65□□□□□ -0.22
U2AF1-209ENST00000475639 SYNJ2O15056 1496 aa13.65□□□□□ -0.22
U2AF1-209ENST00000475639 DYDC1Q8WWB3 177 aa13.65□□□□□ -0.22
U2AF1-209ENST00000475639 ANO2Q9NQ90 1003 aa13.65□□□□□ -0.22
U2AF1-209ENST00000475639 C9orf78Q9NZ63 289 aaPredicted RBP13.65□□□□□ -0.22
U2AF1-209ENST00000475639 IFIT2P09913 472 aaKnown RBP13.64□□□□□ -0.23
U2AF1-209ENST00000475639 GABPB1Q06547 395 aaPredicted RBP13.64□□□□□ -0.23
U2AF1-209ENST00000475639 ELL2O00472 640 aaPredicted RBP13.64□□□□□ -0.23
U2AF1-209ENST00000475639 PDILTQ8N807 584 aa13.64□□□□□ -0.23
U2AF1-209ENST00000475639 LTV1Q96GA3 475 aaPredicted RBP13.64□□□□□ -0.23
U2AF1-209ENST00000475639 CWC22Q9HCG8 908 aaKnown RBP13.64□□□□□ -0.23
U2AF1-209ENST00000475639 SLC20A2Q08357 652 aa13.64□□□□□ -0.23
U2AF1-209ENST00000475639 RABEP1Q15276 862 aa13.64□□□□□ -0.23
U2AF1-209ENST00000475639 RAPGEF6Q8TEU7 1601 aa13.64□□□□□ -0.23
U2AF1-209ENST00000475639 RALYLQ86SE5 291 aaKnown RBP13.64□□□□□ -0.23
U2AF1-209ENST00000475639 TMEM57Q8N5G2 664 aa13.64□□□□□ -0.23
U2AF1-209ENST00000475639 USP25Q9UHP3 1055 aa13.64□□□□□ -0.23
U2AF1-209ENST00000475639 ATF7IPQ6VMQ6 1270 aa13.63□□□□□ -0.23
U2AF1-209ENST00000475639 VPS37DQ86XT2 251 aa13.63□□□□□ -0.23
U2AF1-209ENST00000475639 MBD3O95983 291 aa13.63□□□□□ -0.23
U2AF1-209ENST00000475639 SEPT7Q16181 437 aaKnown RBP13.63□□□□□ -0.23
U2AF1-209ENST00000475639 GOLGA6L10A6NI86 522 aa13.63□□□□□ -0.23
U2AF1-209ENST00000475639 CARD14Q9BXL6 1004 aa13.63□□□□□ -0.23
U2AF1-209ENST00000475639 ANKRD62A6NC57 917 aa13.62□□□□□ -0.23
U2AF1-209ENST00000475639 CCP110O43303 1012 aa13.62□□□□□ -0.23
U2AF1-209ENST00000475639 FILIP1LQ4L180 1135 aa13.62□□□□□ -0.23
U2AF1-209ENST00000475639 CTNNA3Q9UI47 895 aa13.62□□□□□ -0.23
U2AF1-209ENST00000475639 XBP1P17861 261 aa13.62□□□□□ -0.23
U2AF1-209ENST00000475639 SMARCE1Q969G3 411 aa13.62□□□□□ -0.23
U2AF1-209ENST00000475639 NCBP1Q09161 790 aaKnown RBP13.61□□□□□ -0.23
U2AF1-209ENST00000475639 CCDC27Q2M243 656 aa13.61□□□□□ -0.23
U2AF1-209ENST00000475639 SSH1Q8WYL5 1049 aa13.61□□□□□ -0.23
U2AF1-209ENST00000475639 TSR2Q969E8 191 aaKnown RBP13.61□□□□□ -0.23
U2AF1-209ENST00000475639 FBXW7Q969H0 707 aa13.61□□□□□ -0.23
U2AF1-209ENST00000475639 BRMS1Q9HCU9 246 aa13.61□□□□□ -0.23
U2AF1-209ENST00000475639 SKIDA1Q1XH10 827 aa13.61□□□□□ -0.23
U2AF1-209ENST00000475639 TRIM5Q9C035 493 aa13.61□□□□□ -0.23
U2AF1-209ENST00000475639 LUC7LQ9NQ29 371 aaKnown RBP13.61□□□□□ -0.23
U2AF1-209ENST00000475639 ADCY5O95622 1261 aa13.61□□□□□ -0.23
U2AF1-209ENST00000475639 TRHP20396 242 aaPredicted RBP13.61□□□□□ -0.23
U2AF1-209ENST00000475639 URB2Q14146 1524 aaKnown RBP13.61□□□□□ -0.23
U2AF1-209ENST00000475639 TTLL5Q6EMB2 1281 aa13.6□□□□□ -0.23
U2AF1-209ENST00000475639 DNAJC2Q99543 621 aaKnown RBP13.6□□□□□ -0.23
U2AF1-209ENST00000475639 PIP4K2AP48426 406 aaPredicted RBP13.6□□□□□ -0.23
U2AF1-209ENST00000475639 SYCP1Q15431 976 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms