RNA–Protein interactions for RNA: ENST00000472490.1

BRCA1-211, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 3

Gene BRCA1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-211ENST00000472490 PLEKHG2Q9H7P9 1386 aa19.12■□□□□ 0.65
BRCA1-211ENST00000472490 TRIM37O94972 964 aa19.12■□□□□ 0.65
BRCA1-211ENST00000472490 PPP2R1AP30153 589 aa19.12■□□□□ 0.65
BRCA1-211ENST00000472490 IL13P35225 146 aa19.12■□□□□ 0.65
BRCA1-211ENST00000472490 BAG6P46379 1132 aa19.12■□□□□ 0.65
BRCA1-211ENST00000472490 RALBP1Q15311 655 aa19.12■□□□□ 0.65
BRCA1-211ENST00000472490 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.11■□□□□ 0.65
BRCA1-211ENST00000472490 SPG7Q9UQ90 795 aa19.11■□□□□ 0.65
BRCA1-211ENST00000472490 PARD3Q8TEW0 1356 aa19.1■□□□□ 0.65
BRCA1-211ENST00000472490 PCDH11XQ9BZA7 1347 aa19.1■□□□□ 0.65
BRCA1-211ENST00000472490 PCDH11YQ9BZA8 1340 aa19.1■□□□□ 0.65
BRCA1-211ENST00000472490 SULT6B1Q6IMI4 303 aa19.08■□□□□ 0.64
BRCA1-211ENST00000472490 BCL11BQ9C0K0 894 aaPredicted RBP19.08■□□□□ 0.64
BRCA1-211ENST00000472490 NUDCQ9Y266 331 aa19.08■□□□□ 0.64
BRCA1-211ENST00000472490 AMOTQ4VCS5 1084 aa19.07■□□□□ 0.64
BRCA1-211ENST00000472490 PPP4R3CPQ6ZMV5 832 aa19.07■□□□□ 0.64
BRCA1-211ENST00000472490 APBA3O96018 575 aa19.06■□□□□ 0.64
BRCA1-211ENST00000472490 KDRP35968 1356 aa19.06■□□□□ 0.64
BRCA1-211ENST00000472490 PLEKHO1Q53GL0 409 aaPredicted RBP19.05■□□□□ 0.64
BRCA1-211ENST00000472490 RGPD2P0DJD1 1756 aa19.05■□□□□ 0.64
BRCA1-211ENST00000472490 EP400Q96L91 3159 aa19.04■□□□□ 0.64
BRCA1-211ENST00000472490 U2SURPO15042 1029 aaKnown RBP19.04■□□□□ 0.64
BRCA1-211ENST00000472490 RGPD1P0DJD0 1748 aa19.03■□□□□ 0.64
BRCA1-211ENST00000472490 DEFB132Q7Z7B7 95 aa19.03■□□□□ 0.64
BRCA1-211ENST00000472490 IFNL2Q8IZJ0 200 aa19.03■□□□□ 0.64
BRCA1-211ENST00000472490 AEBP1Q8IUX7 1158 aa19.02■□□□□ 0.64
BRCA1-211ENST00000472490 ACSBG1Q96GR2 724 aa19.02■□□□□ 0.64
BRCA1-211ENST00000472490 MYBBP1AQ9BQG0 1328 aaKnown RBP19.01■□□□□ 0.63
BRCA1-211ENST00000472490 PLSCR1O15162 318 aa19.01■□□□□ 0.63
BRCA1-211ENST00000472490 CYP27B1O15528 508 aa19.01■□□□□ 0.63
BRCA1-211ENST00000472490 HSP90AB1P08238 724 aaKnown RBP19.01■□□□□ 0.63
BRCA1-211ENST00000472490 HMOX1P09601 288 aa19.01■□□□□ 0.63
BRCA1-211ENST00000472490 EN1Q05925 392 aaPredicted RBP19.01■□□□□ 0.63
BRCA1-211ENST00000472490 COL3A1P02461 1466 aaPredicted RBP19.01■□□□□ 0.63
BRCA1-211ENST00000472490 SYTL4Q96C24 671 aaPredicted RBP19■□□□□ 0.63
BRCA1-211ENST00000472490 KCNQ2O43526 872 aa18.99■□□□□ 0.63
BRCA1-211ENST00000472490 PHKG2P15735 406 aa18.99■□□□□ 0.63
BRCA1-211ENST00000472490 NKX1-1Q15270 411 aaPredicted RBP18.99■□□□□ 0.63
BRCA1-211ENST00000472490 C1orf141Q5JVX7 400 aa18.99■□□□□ 0.63
BRCA1-211ENST00000472490 PRKRIP1Q9H875 184 aaPredicted RBP18.99■□□□□ 0.63
BRCA1-211ENST00000472490 U2AF1L5P0DN76 240 aaPredicted RBP18.98■□□□□ 0.63
BRCA1-211ENST00000472490 PRIM1P49642 420 aaKnown RBP18.98■□□□□ 0.63
BRCA1-211ENST00000472490 U2AF1Q01081 240 aaKnown RBP eCLIP18.98■□□□□ 0.63
BRCA1-211ENST00000472490 ZNF530Q6P9A1 599 aaPredicted RBP18.97■□□□□ 0.63
BRCA1-211ENST00000472490 CAMKK2Q96RR4 588 aa18.97■□□□□ 0.63
BRCA1-211ENST00000472490 PKD1L3Q7Z443 1732 aa18.97■□□□□ 0.63
BRCA1-211ENST00000472490 EZH2Q15910 746 aaKnown RBP18.96■□□□□ 0.63
BRCA1-211ENST00000472490 TNS1Q9HBL0 1735 aaKnown RBP18.95■□□□□ 0.62
BRCA1-211ENST00000472490 FCHSD2O94868 740 aa18.95■□□□□ 0.62
BRCA1-211ENST00000472490 DCAF5Q96JK2 942 aa18.95■□□□□ 0.62
BRCA1-211ENST00000472490 PNNQ9H307 717 aaKnown RBP18.95■□□□□ 0.62
BRCA1-211ENST00000472490 NEFMP07197 916 aa18.94■□□□□ 0.62
BRCA1-211ENST00000472490 AKAP4Q5JQC9 854 aa18.94■□□□□ 0.62
BRCA1-211ENST00000472490 PTF1AQ7RTS3 328 aa18.94■□□□□ 0.62
BRCA1-211ENST00000472490 NHSQ6T4R5 1651 aa18.94■□□□□ 0.62
BRCA1-211ENST00000472490 ANP32CO43423 234 aa18.93■□□□□ 0.62
BRCA1-211ENST00000472490 SHANK3Q9BYB0 1731 aa18.93■□□□□ 0.62
BRCA1-211ENST00000472490 HMGB2P26583 209 aaKnown RBP18.92■□□□□ 0.62
BRCA1-211ENST00000472490 MPRIPQ6WCQ1 1025 aa18.92■□□□□ 0.62
BRCA1-211ENST00000472490 GAS2L2Q8NHY3 880 aa18.92■□□□□ 0.62
BRCA1-211ENST00000472490 RSPH6AQ9H0K4 717 aa18.92■□□□□ 0.62
BRCA1-211ENST00000472490 ERVV-2B6SEH9 535 aa18.91■□□□□ 0.62
BRCA1-211ENST00000472490 PRKAR2BP31323 418 aa18.91■□□□□ 0.62
BRCA1-211ENST00000472490 NBPF14Q5TI25 921 aa18.91■□□□□ 0.62
BRCA1-211ENST00000472490 TMOD3Q9NYL9 352 aa18.91■□□□□ 0.62
BRCA1-211ENST00000472490 SBF2Q86WG5 1849 aa18.9■□□□□ 0.62
BRCA1-211ENST00000472490 MTHFSDQ2M296 383 aaKnown RBP18.9■□□□□ 0.62
BRCA1-211ENST00000472490 TXNRD1Q16881 649 aa18.89■□□□□ 0.61
BRCA1-211ENST00000472490 SLC27A3Q5K4L6 730 aa18.89■□□□□ 0.61
BRCA1-211ENST00000472490 SMARCC1Q92922 1105 aaPredicted RBP18.89■□□□□ 0.61
BRCA1-211ENST00000472490 CABP4P57796 275 aa18.88■□□□□ 0.61
BRCA1-211ENST00000472490 RGPD3A6NKT7 1758 aaPredicted RBP18.87■□□□□ 0.61
BRCA1-211ENST00000472490 WDR43Q15061 677 aaKnown RBP eCLIP18.87■□□□□ 0.61
BRCA1-211ENST00000472490 RGPD4Q7Z3J3 1758 aa18.87■□□□□ 0.61
BRCA1-211ENST00000472490 DOT1LQ8TEK3 1739 aa18.87■□□□□ 0.61
BRCA1-211ENST00000472490 PIGBQ92521 554 aa18.87■□□□□ 0.61
BRCA1-211ENST00000472490 GNAT3A8MTJ3 354 aa18.86■□□□□ 0.61
BRCA1-211ENST00000472490 PROM2Q8N271 834 aa18.85■□□□□ 0.61
BRCA1-211ENST00000472490 MAP3K5Q99683 1374 aa18.84■□□□□ 0.61
BRCA1-211ENST00000472490 MAPK8IP3Q9UPT6 1336 aa18.84■□□□□ 0.61
BRCA1-211ENST00000472490 PHACTR3Q96KR7 559 aa18.84■□□□□ 0.61
BRCA1-211ENST00000472490 KDM6AO15550 1401 aaPredicted RBP18.83■□□□□ 0.61
BRCA1-211ENST00000472490 PALLDQ8WX93 1383 aa18.83■□□□□ 0.61
BRCA1-211ENST00000472490 RTF1Q92541 710 aaKnown RBP18.83■□□□□ 0.6
BRCA1-211ENST00000472490 BTAF1O14981 1849 aa18.82■□□□□ 0.6
BRCA1-211ENST00000472490 RNMTO43148 476 aaKnown RBP18.82■□□□□ 0.6
BRCA1-211ENST00000472490 CCNL1Q9UK58 526 aaPredicted RBP18.82■□□□□ 0.6
BRCA1-211ENST00000472490 NFATC2IPQ8NCF5 419 aa18.81■□□□□ 0.6
BRCA1-211ENST00000472490 PLEKHF1Q96S99 279 aa18.81■□□□□ 0.6
BRCA1-211ENST00000472490 SLC52A2Q9HAB3 445 aa18.81■□□□□ 0.6
BRCA1-211ENST00000472490 RREB1Q92766 1687 aa18.8■□□□□ 0.6
BRCA1-211ENST00000472490 HTATSF1O43719 755 aaKnown RBP18.8■□□□□ 0.6
BRCA1-211ENST00000472490 LGR6Q9HBX8 967 aa18.8■□□□□ 0.6
BRCA1-211ENST00000472490 STK32BQ9NY57 414 aa18.8■□□□□ 0.6
BRCA1-211ENST00000472490 TEFQ10587 303 aa18.79■□□□□ 0.6
BRCA1-211ENST00000472490 R3HDM1Q15032 1099 aaKnown RBP18.79■□□□□ 0.6
BRCA1-211ENST00000472490 ATG3Q9NT62 314 aa18.79■□□□□ 0.6
BRCA1-211ENST00000472490 ASAP1Q9ULH1 1129 aa18.79■□□□□ 0.6
BRCA1-211ENST00000472490 TOGARAM1Q9Y4F4 1720 aa18.79■□□□□ 0.6
BRCA1-211ENST00000472490 LRRC4BQ9NT99 713 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms