RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	SIX5	Q8N196	739 aa		7.14	□□□□□ -1.27
PTCD3-209	ENST00000472044	DNAAF2	Q9NVR5	837 aa	Known RBP	7.14	□□□□□ -1.27
PTCD3-209	ENST00000472044	NOVA2	Q9UNW9	492 aa	Known RBP	7.14	□□□□□ -1.27
PTCD3-209	ENST00000472044	MYC	P01106	439 aa	Predicted RBP	7.13	□□□□□ -1.27
PTCD3-209	ENST00000472044	RAB15	P59190	212 aa		7.13	□□□□□ -1.27
PTCD3-209	ENST00000472044	GTF2I	P78347	998 aa		7.13	□□□□□ -1.27
PTCD3-209	ENST00000472044	PRR20E	P86478	221 aa		7.13	□□□□□ -1.27
PTCD3-209	ENST00000472044	PRR20C	P86479	221 aa		7.13	□□□□□ -1.27
PTCD3-209	ENST00000472044	PRR20D	P86480	221 aa		7.13	□□□□□ -1.27
PTCD3-209	ENST00000472044	PRR20B	P86481	221 aa		7.13	□□□□□ -1.27
PTCD3-209	ENST00000472044	PRR20A	P86496	221 aa		7.13	□□□□□ -1.27
PTCD3-209	ENST00000472044	CC2D2B	Q6DHV5	1058 aa		7.13	□□□□□ -1.27
PTCD3-209	ENST00000472044	ANKMY2	Q8IV38	441 aa		7.13	□□□□□ -1.27
PTCD3-209	ENST00000472044	ALDH1A1	P00352	501 aa		7.12	□□□□□ -1.27
PTCD3-209	ENST00000472044	NR3C2	P08235	984 aa		7.12	□□□□□ -1.27
PTCD3-209	ENST00000472044	SCTR	P47872	440 aa		7.12	□□□□□ -1.27
PTCD3-209	ENST00000472044	FOXC1	Q12948	553 aa		7.12	□□□□□ -1.27
PTCD3-209	ENST00000472044	PPP1R26	Q5T8A7	1209 aa	Predicted RBP	7.12	□□□□□ -1.27
PTCD3-209	ENST00000472044	TMPRSS4	Q9NRS4	437 aa		7.12	□□□□□ -1.27
PTCD3-209	ENST00000472044	TOR4A	Q9NXH8	423 aa		7.12	□□□□□ -1.27
PTCD3-209	ENST00000472044	EMILIN1	Q9Y6C2	1016 aa		7.12	□□□□□ -1.27
PTCD3-209	ENST00000472044	LILRA1	O75019	489 aa		7.11	□□□□□ -1.27
PTCD3-209	ENST00000472044	MYT1	Q01538	1121 aa		7.11	□□□□□ -1.27
PTCD3-209	ENST00000472044	TMEM164	Q5U3C3	297 aa		7.11	□□□□□ -1.27
PTCD3-209	ENST00000472044	CCDC102B	Q68D86	513 aa		7.11	□□□□□ -1.27
PTCD3-209	ENST00000472044	FAM200A	Q8TCP9	573 aa		7.11	□□□□□ -1.27
PTCD3-209	ENST00000472044	OSBPL3	Q9H4L5	887 aa		7.11	□□□□□ -1.27
PTCD3-209	ENST00000472044	PGPEP1	Q9NXJ5	209 aa		7.11	□□□□□ -1.27
PTCD3-209	ENST00000472044	KIAA1024	Q9UPX6	916 aa		7.11	□□□□□ -1.27
PTCD3-209	ENST00000472044	FAM69C	Q0P6D2	419 aa		7.1	□□□□□ -1.27
PTCD3-209	ENST00000472044	DPYD	Q12882	1025 aa		7.1	□□□□□ -1.27
PTCD3-209	ENST00000472044	NNT	Q13423	1086 aa		7.1	□□□□□ -1.27
PTCD3-209	ENST00000472044	SWI5	Q1ZZU3	235 aa		7.1	□□□□□ -1.27
PTCD3-209	ENST00000472044	TRIM67	Q6ZTA4	783 aa		7.1	□□□□□ -1.27
PTCD3-209	ENST00000472044	KCTD17	Q8N5Z5	321 aa		7.1	□□□□□ -1.27
PTCD3-209	ENST00000472044	ZNF784	Q8NCA9	323 aa	Predicted RBP	7.1	□□□□□ -1.27
PTCD3-209	ENST00000472044	STK32A	Q8WU08	396 aa		7.1	□□□□□ -1.27
PTCD3-209	ENST00000472044	KLF16	Q9BXK1	252 aa	Predicted RBP	7.1	□□□□□ -1.27
PTCD3-209	ENST00000472044	WASF2	Q9Y6W5	498 aa		7.1	□□□□□ -1.27
PTCD3-209	ENST00000472044		M0R2N6	131 aa		7.09	□□□□□ -1.27
PTCD3-209	ENST00000472044	WASL	O00401	505 aa	Predicted RBP	7.09	□□□□□ -1.27
PTCD3-209	ENST00000472044	BRD1	O95696	1058 aa		7.09	□□□□□ -1.27
PTCD3-209	ENST00000472044	SEC13	P55735	322 aa		7.09	□□□□□ -1.27
PTCD3-209	ENST00000472044	CYP4X1	Q8N118	509 aa		7.09	□□□□□ -1.27
PTCD3-209	ENST00000472044	ZNF594	Q96JF6	807 aa	Predicted RBP	7.09	□□□□□ -1.27
PTCD3-209	ENST00000472044	ESF1	Q9H501	851 aa	Known RBP	7.09	□□□□□ -1.27
PTCD3-209	ENST00000472044	TTC24	A2A3L6	582 aa	Predicted RBP	7.08	□□□□□ -1.28
PTCD3-209	ENST00000472044		J3QL48	77 aa		7.08	□□□□□ -1.28
PTCD3-209	ENST00000472044	ADD1	P35611	737 aa	Known RBP	7.08	□□□□□ -1.28
PTCD3-209	ENST00000472044	TPCN2	Q8NHX9	752 aa		7.08	□□□□□ -1.28
PTCD3-209	ENST00000472044	CLP1	Q92989	425 aa	Known RBP	7.08	□□□□□ -1.28
PTCD3-209	ENST00000472044	CYLD	Q9NQC7	956 aa		7.08	□□□□□ -1.28
PTCD3-209	ENST00000472044	GNRH1	P01148	92 aa		7.07	□□□□□ -1.28
PTCD3-209	ENST00000472044	SMPD1	P17405	629 aa		7.07	□□□□□ -1.28
PTCD3-209	ENST00000472044	CYP2U1	Q7Z449	544 aa		7.07	□□□□□ -1.28
PTCD3-209	ENST00000472044	RBM19	Q9Y4C8	960 aa	Known RBP	7.07	□□□□□ -1.28
PTCD3-209	ENST00000472044	CARNS1	A5YM72	827 aa		7.06	□□□□□ -1.28
PTCD3-209	ENST00000472044	TMEM229A	B2RXF0	380 aa		7.06	□□□□□ -1.28
PTCD3-209	ENST00000472044	TNFRSF10A	O00220	468 aa		7.06	□□□□□ -1.28
PTCD3-209	ENST00000472044	SCNN1D	P51172	638 aa		7.06	□□□□□ -1.28
PTCD3-209	ENST00000472044	PSME1	Q06323	249 aa		7.06	□□□□□ -1.28
PTCD3-209	ENST00000472044		Q6ZVU0	165 aa		7.06	□□□□□ -1.28
PTCD3-209	ENST00000472044	SFI1	A8K8P3	1242 aa		7.05	□□□□□ -1.28
PTCD3-209	ENST00000472044	PATL2	C9JE40	543 aa	Known RBP	7.05	□□□□□ -1.28
PTCD3-209	ENST00000472044	B4GALNT3	Q6L9W6	998 aa		7.05	□□□□□ -1.28
PTCD3-209	ENST00000472044	ITPKC	Q96DU7	683 aa		7.05	□□□□□ -1.28
PTCD3-209	ENST00000472044	BACH1	O14867	736 aa		7.04	□□□□□ -1.28
PTCD3-209	ENST00000472044	ZIC2	O95409	532 aa	Predicted RBP	7.04	□□□□□ -1.28
PTCD3-209	ENST00000472044	INHA	P05111	366 aa		7.04	□□□□□ -1.28
PTCD3-209	ENST00000472044	ADH1A	P07327	375 aa		7.04	□□□□□ -1.28
PTCD3-209	ENST00000472044	TIMP2	P16035	220 aa		7.04	□□□□□ -1.28
PTCD3-209	ENST00000472044	GDF10	P55107	478 aa		7.04	□□□□□ -1.28
PTCD3-209	ENST00000472044	WDR4	P57081	412 aa	Known RBP	7.04	□□□□□ -1.28
PTCD3-209	ENST00000472044	KCNA1	Q09470	495 aa		7.04	□□□□□ -1.28
PTCD3-209	ENST00000472044	TRIM26	Q12899	539 aa	Predicted RBP	7.04	□□□□□ -1.28
PTCD3-209	ENST00000472044	SLC4A9	Q96Q91	983 aa		7.04	□□□□□ -1.28
PTCD3-209	ENST00000472044	SLAIN2	Q9P270	581 aa		7.04	□□□□□ -1.28
PTCD3-209	ENST00000472044	SSFA2	P28290	1259 aa		7.03	□□□□□ -1.28
PTCD3-209	ENST00000472044	ESCO1	Q5FWF5	840 aa		7.03	□□□□□ -1.28
PTCD3-209	ENST00000472044	KDF1	Q8NAX2	398 aa	Predicted RBP	7.03	□□□□□ -1.28
PTCD3-209	ENST00000472044	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	7.03	□□□□□ -1.28
PTCD3-209	ENST00000472044	C1orf216	Q8TAB5	229 aa		7.03	□□□□□ -1.28
PTCD3-209	ENST00000472044	ETNK1	Q9HBU6	452 aa		7.03	□□□□□ -1.28
PTCD3-209	ENST00000472044	ZNF358	Q9NW07	568 aa		7.03	□□□□□ -1.28
PTCD3-209	ENST00000472044	ZBTB7C	A1YPR0	619 aa		7.02	□□□□□ -1.29
PTCD3-209	ENST00000472044	CBLB	Q13191	982 aa		7.02	□□□□□ -1.29
PTCD3-209	ENST00000472044	PHLDB3	Q6NSJ2	640 aa		7.02	□□□□□ -1.29
PTCD3-209	ENST00000472044	AEBP1	Q8IUX7	1158 aa		7.02	□□□□□ -1.29
PTCD3-209	ENST00000472044	XAGE2	Q96GT9	111 aa		7.02	□□□□□ -1.29
PTCD3-209	ENST00000472044	ZFAND3	Q9H8U3	227 aa		7.02	□□□□□ -1.29
PTCD3-209	ENST00000472044	HRH3	Q9Y5N1	445 aa		7.02	□□□□□ -1.29
PTCD3-209	ENST00000472044	PTGIR	P43119	386 aa		7.01	□□□□□ -1.29
PTCD3-209	ENST00000472044	EPHA4	P54764	986 aa		7.01	□□□□□ -1.29
PTCD3-209	ENST00000472044	MTFR1	Q15390	333 aa		7.01	□□□□□ -1.29
PTCD3-209	ENST00000472044	OCLN	Q16625	522 aa		7.01	□□□□□ -1.29
PTCD3-209	ENST00000472044	HPS1	Q92902	700 aa		7.01	□□□□□ -1.29
PTCD3-209	ENST00000472044	PDZRN3	Q9UPQ7	1066 aa		7.01	□□□□□ -1.29
PTCD3-209	ENST00000472044	STAU1	O95793	577 aa	Known RBP	7	□□□□□ -1.29
PTCD3-209	ENST00000472044	AVP	P01185	164 aa		7	□□□□□ -1.29
PTCD3-209	ENST00000472044	ATP2B4	P23634	1241 aa		7	□□□□□ -1.29

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