RNA–Protein interactions for RNA: ENST00000470338.1

TOP3B-215, Transcript of DNA topoisomerase III beta, humanhuman

TSL 5

Gene TOP3B, Length 624 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3B-215ENST00000470338 NPC1L1Q9UHC9 1359 aa19.31■□□□□ 0.68
TOP3B-215ENST00000470338 NHSQ6T4R5 1651 aa19.3■□□□□ 0.68
TOP3B-215ENST00000470338 PLSCR1O15162 318 aa19.3■□□□□ 0.68
TOP3B-215ENST00000470338 RAPGEF4Q8WZA2 1011 aa19.3■□□□□ 0.68
TOP3B-215ENST00000470338 TATP17735 454 aaPredicted RBP19.29■□□□□ 0.68
TOP3B-215ENST00000470338 EIF4A2Q14240 407 aaKnown RBP19.29■□□□□ 0.68
TOP3B-215ENST00000470338 DDX54Q8TDD1 881 aaKnown RBP19.29■□□□□ 0.68
TOP3B-215ENST00000470338 EYA1Q99502 592 aa19.29■□□□□ 0.68
TOP3B-215ENST00000470338 KCNQ2O43526 872 aa19.27■□□□□ 0.68
TOP3B-215ENST00000470338 NUP188Q5SRE5 1749 aa19.27■□□□□ 0.68
TOP3B-215ENST00000470338 PKD1L3Q7Z443 1732 aa19.26■□□□□ 0.67
TOP3B-215ENST00000470338 CC2D1BQ5T0F9 858 aaKnown RBP19.26■□□□□ 0.67
TOP3B-215ENST00000470338 ACSBG1Q96GR2 724 aa19.26■□□□□ 0.67
TOP3B-215ENST00000470338 BTAF1O14981 1849 aa19.25■□□□□ 0.67
TOP3B-215ENST00000470338 IGSF1Q8N6C5 1336 aa19.24■□□□□ 0.67
TOP3B-215ENST00000470338 DOT1LQ8TEK3 1739 aa19.23■□□□□ 0.67
TOP3B-215ENST00000470338 MTHFSP49914 203 aa19.22■□□□□ 0.67
TOP3B-215ENST00000470338 PROM2Q8N271 834 aa19.22■□□□□ 0.67
TOP3B-215ENST00000470338 PCDH11XQ9BZA7 1347 aa19.22■□□□□ 0.67
TOP3B-215ENST00000470338 PCDH11YQ9BZA8 1340 aa19.22■□□□□ 0.67
TOP3B-215ENST00000470338 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.21■□□□□ 0.67
TOP3B-215ENST00000470338 PLEKHG2Q9H7P9 1386 aa19.2■□□□□ 0.66
TOP3B-215ENST00000470338 CYP27B1O15528 508 aa19.2■□□□□ 0.66
TOP3B-215ENST00000470338 IL13P35225 146 aa19.19■□□□□ 0.66
TOP3B-215ENST00000470338 SPG7Q9UQ90 795 aa19.19■□□□□ 0.66
TOP3B-215ENST00000470338 PSDA5PKW4 1024 aaPredicted RBP19.18■□□□□ 0.66
TOP3B-215ENST00000470338 PRIM1P49642 420 aaKnown RBP19.18■□□□□ 0.66
TOP3B-215ENST00000470338 ITGB4P16144 1822 aa19.17■□□□□ 0.66
TOP3B-215ENST00000470338 R3HDM1Q15032 1099 aaKnown RBP19.17■□□□□ 0.66
TOP3B-215ENST00000470338 NKX1-1Q15270 411 aaPredicted RBP19.17■□□□□ 0.66
TOP3B-215ENST00000470338 TXNRD1Q16881 649 aa19.17■□□□□ 0.66
TOP3B-215ENST00000470338 NBPF14Q5TI25 921 aa19.17■□□□□ 0.66
TOP3B-215ENST00000470338 SRCAPQ6ZRS2 3230 aa19.16■□□□□ 0.66
TOP3B-215ENST00000470338 CNGB1Q14028 1251 aaPredicted RBP19.16■□□□□ 0.66
TOP3B-215ENST00000470338 TOGARAM1Q9Y4F4 1720 aa19.15■□□□□ 0.66
TOP3B-215ENST00000470338 SYTL4Q96C24 671 aaPredicted RBP19.15■□□□□ 0.66
TOP3B-215ENST00000470338 KDRP35968 1356 aa19.15■□□□□ 0.66
TOP3B-215ENST00000470338 LY75O60449 1722 aa19.14■□□□□ 0.66
TOP3B-215ENST00000470338 ZEB1P37275 1124 aaPredicted RBP19.14■□□□□ 0.65
TOP3B-215ENST00000470338 AEBP1Q8IUX7 1158 aa19.14■□□□□ 0.65
TOP3B-215ENST00000470338 SULT6B1Q6IMI4 303 aa19.13■□□□□ 0.65
TOP3B-215ENST00000470338 IFNL2Q8IZJ0 200 aa19.13■□□□□ 0.65
TOP3B-215ENST00000470338 COL3A1P02461 1466 aaPredicted RBP19.12■□□□□ 0.65
TOP3B-215ENST00000470338 DIAPH1O60610 1272 aaKnown RBP19.12■□□□□ 0.65
TOP3B-215ENST00000470338 PHKG2P15735 406 aa19.12■□□□□ 0.65
TOP3B-215ENST00000470338 AMOTQ4VCS5 1084 aa19.11■□□□□ 0.65
TOP3B-215ENST00000470338 PLEKHO1Q53GL0 409 aaPredicted RBP19.11■□□□□ 0.65
TOP3B-215ENST00000470338 ANO8Q9HCE9 1232 aaPredicted RBP19.11■□□□□ 0.65
TOP3B-215ENST00000470338 PAPPAQ13219 1627 aa19.1■□□□□ 0.65
TOP3B-215ENST00000470338 PPP2R1AP30153 589 aa19.09■□□□□ 0.65
TOP3B-215ENST00000470338 LRRC4BQ9NT99 713 aa19.09■□□□□ 0.65
TOP3B-215ENST00000470338 LRP5O75197 1615 aa19.09■□□□□ 0.65
TOP3B-215ENST00000470338 SLC27A3Q5K4L6 730 aa19.08■□□□□ 0.64
TOP3B-215ENST00000470338 MPRIPQ6WCQ1 1025 aa19.08■□□□□ 0.64
TOP3B-215ENST00000470338 SLC15A2Q16348 729 aa19.06■□□□□ 0.64
TOP3B-215ENST00000470338 ZNF530Q6P9A1 599 aaPredicted RBP19.06■□□□□ 0.64
TOP3B-215ENST00000470338 PIGBQ92521 554 aa19.06■□□□□ 0.64
TOP3B-215ENST00000470338 STK32BQ9NY57 414 aa19.06■□□□□ 0.64
TOP3B-215ENST00000470338 CASZ1Q86V15 1759 aa19.06■□□□□ 0.64
TOP3B-215ENST00000470338 HSP90AB1P08238 724 aaKnown RBP19.05■□□□□ 0.64
TOP3B-215ENST00000470338 HMOX1P09601 288 aa19.05■□□□□ 0.64
TOP3B-215ENST00000470338 DCAF5Q96JK2 942 aa19.05■□□□□ 0.64
TOP3B-215ENST00000470338 CFAP53Q96M91 514 aa19.05■□□□□ 0.64
TOP3B-215ENST00000470338 DDX10Q13206 875 aaKnown RBP19.04■□□□□ 0.64
TOP3B-215ENST00000470338 VIRMAQ69YN4 1812 aaKnown RBP19.04■□□□□ 0.64
TOP3B-215ENST00000470338 TAF1LQ8IZX4 1826 aa19.04■□□□□ 0.64
TOP3B-215ENST00000470338 SCN11AQ9UI33 1791 aa19.04■□□□□ 0.64
TOP3B-215ENST00000470338 ERVV-2B6SEH9 535 aa19.03■□□□□ 0.64
TOP3B-215ENST00000470338 SMARCC1Q92922 1105 aaPredicted RBP19.03■□□□□ 0.64
TOP3B-215ENST00000470338 QSER1Q2KHR3 1735 aa19.03■□□□□ 0.64
TOP3B-215ENST00000470338 KCNQ4P56696 695 aa19.02■□□□□ 0.64
TOP3B-215ENST00000470338 C1orf141Q5JVX7 400 aa19.02■□□□□ 0.64
TOP3B-215ENST00000470338 AKT1S1Q96B36 256 aa19.02■□□□□ 0.64
TOP3B-215ENST00000470338 TMOD3Q9NYL9 352 aa19.02■□□□□ 0.64
TOP3B-215ENST00000470338 CCNL1Q9UK58 526 aaPredicted RBP19.02■□□□□ 0.64
TOP3B-215ENST00000470338 PALLDQ8WX93 1383 aa19.02■□□□□ 0.64
TOP3B-215ENST00000470338 KDM6AO15550 1401 aaPredicted RBP19.01■□□□□ 0.63
TOP3B-215ENST00000470338 U2SURPO15042 1029 aaKnown RBP19.01■□□□□ 0.63
TOP3B-215ENST00000470338 TUBGCP6Q96RT7 1819 aa19■□□□□ 0.63
TOP3B-215ENST00000470338 ZNF827Q17R98 1081 aa19■□□□□ 0.63
TOP3B-215ENST00000470338 PDGFDQ9GZP0 370 aaPredicted RBP19■□□□□ 0.63
TOP3B-215ENST00000470338 C5P01031 1676 aa19■□□□□ 0.63
TOP3B-215ENST00000470338 AKAP4Q5JQC9 854 aa18.99■□□□□ 0.63
TOP3B-215ENST00000470338 NUDCQ9Y266 331 aa18.99■□□□□ 0.63
TOP3B-215ENST00000470338 MTHFSDQ2M296 383 aaKnown RBP18.98■□□□□ 0.63
TOP3B-215ENST00000470338 ASAP1Q9ULH1 1129 aa18.98■□□□□ 0.63
TOP3B-215ENST00000470338 HMGB2P26583 209 aaKnown RBP18.97■□□□□ 0.63
TOP3B-215ENST00000470338 RALBP1Q15311 655 aa18.97■□□□□ 0.63
TOP3B-215ENST00000470338 ATG3Q9NT62 314 aa18.97■□□□□ 0.63
TOP3B-215ENST00000470338 ADAMTS7Q9UKP4 1686 aa18.97■□□□□ 0.63
TOP3B-215ENST00000470338 CABP4P57796 275 aa18.96■□□□□ 0.63
TOP3B-215ENST00000470338 SPON1Q9HCB6 807 aa18.96■□□□□ 0.63
TOP3B-215ENST00000470338 ZNF831Q5JPB2 1677 aa18.95■□□□□ 0.62
TOP3B-215ENST00000470338 RSPH6AQ9H0K4 717 aa18.95■□□□□ 0.62
TOP3B-215ENST00000470338 LOC102724428A0A0B4J2F2 783 aa18.94■□□□□ 0.62
TOP3B-215ENST00000470338 SIK1P57059 783 aa18.94■□□□□ 0.62
TOP3B-215ENST00000470338 NFATC2IPQ8NCF5 419 aa18.94■□□□□ 0.62
TOP3B-215ENST00000470338 LGR6Q9HBX8 967 aa18.94■□□□□ 0.62
TOP3B-215ENST00000470338 RNMTO43148 476 aaKnown RBP18.93■□□□□ 0.62
TOP3B-215ENST00000470338 FCHSD2O94868 740 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms