RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 BMP2KLQ5H9B9 411 aa11.21□□□□□ -0.61
SYNE1-217ENST00000466159 INTS3Q68E01 1043 aaKnown RBP11.21□□□□□ -0.61
SYNE1-217ENST00000466159 EYA1Q99502 592 aa11.21□□□□□ -0.61
SYNE1-217ENST00000466159 SBNO1A3KN83 1393 aa11.21□□□□□ -0.61
SYNE1-217ENST00000466159 ARHGEF10O15013 1369 aa11.21□□□□□ -0.61
SYNE1-217ENST00000466159 FLT4P35916 1363 aa11.21□□□□□ -0.61
SYNE1-217ENST00000466159 KIAA0232Q92628 1395 aa11.21□□□□□ -0.62
SYNE1-217ENST00000466159 NLRP6P59044 892 aa11.21□□□□□ -0.62
SYNE1-217ENST00000466159 RGS12O14924 1447 aa11.2□□□□□ -0.62
SYNE1-217ENST00000466159 PIK3C2AO00443 1686 aa11.2□□□□□ -0.62
SYNE1-217ENST00000466159 CEP170BQ9Y4F5 1589 aaPredicted RBP11.19□□□□□ -0.62
SYNE1-217ENST00000466159 KIF24Q5T7B8 1368 aa11.19□□□□□ -0.62
SYNE1-217ENST00000466159 SLC4A2P04920 1241 aa11.19□□□□□ -0.62
SYNE1-217ENST00000466159 HAP1P54257 671 aaPredicted RBP11.19□□□□□ -0.62
SYNE1-217ENST00000466159 RTF1Q92541 710 aaKnown RBP11.19□□□□□ -0.62
SYNE1-217ENST00000466159 KDRP35968 1356 aa11.19□□□□□ -0.62
SYNE1-217ENST00000466159 IGSF1Q8N6C5 1336 aa11.18□□□□□ -0.62
SYNE1-217ENST00000466159 XRN1Q8IZH2 1706 aaKnown RBP11.18□□□□□ -0.62
SYNE1-217ENST00000466159 TSPYL4Q9UJ04 414 aa11.18□□□□□ -0.62
SYNE1-217ENST00000466159 RBM25P49756 843 aaKnown RBP11.18□□□□□ -0.62
SYNE1-217ENST00000466159 DCTPP1Q9H773 170 aa11.18□□□□□ -0.62
SYNE1-217ENST00000466159 MSH6P52701 1360 aa11.17□□□□□ -0.62
SYNE1-217ENST00000466159 PTPRCP08575 1304 aa11.17□□□□□ -0.62
SYNE1-217ENST00000466159 TBC1D9Q6ZT07 1266 aa11.17□□□□□ -0.62
SYNE1-217ENST00000466159 G2E3Q7L622 706 aa11.17□□□□□ -0.62
SYNE1-217ENST00000466159 ANKRD44Q8N8A2 993 aa11.17□□□□□ -0.62
SYNE1-217ENST00000466159 ABTB2Q8N961 1025 aa11.17□□□□□ -0.62
SYNE1-217ENST00000466159 MEIS3Q99687 375 aa11.17□□□□□ -0.62
SYNE1-217ENST00000466159 ATP10DQ9P241 1426 aa11.16□□□□□ -0.62
SYNE1-217ENST00000466159 PRKCSHP14314 528 aaPredicted RBP11.16□□□□□ -0.62
SYNE1-217ENST00000466159 HOXC9P31274 260 aa11.16□□□□□ -0.62
SYNE1-217ENST00000466159 C16orf71Q8IYS4 520 aaPredicted RBP11.16□□□□□ -0.62
SYNE1-217ENST00000466159 GAS2L2Q8NHY3 880 aa11.16□□□□□ -0.62
SYNE1-217ENST00000466159 RBM33Q96EV2 1170 aaKnown RBP11.16□□□□□ -0.62
SYNE1-217ENST00000466159 F6X3S4 739 aa11.16□□□□□ -0.62
SYNE1-217ENST00000466159 CEP85Q6P2H3 762 aa11.16□□□□□ -0.62
SYNE1-217ENST00000466159 PLEKHM2Q8IWE5 1019 aa11.16□□□□□ -0.62
SYNE1-217ENST00000466159 LTV1Q96GA3 475 aaPredicted RBP11.16□□□□□ -0.62
SYNE1-217ENST00000466159 ANKARQ7Z5J8 1434 aa11.16□□□□□ -0.62
SYNE1-217ENST00000466159 GSPT1P15170 499 aaKnown RBP11.15□□□□□ -0.62
SYNE1-217ENST00000466159 RTL1A6NKG5 1358 aa11.15□□□□□ -0.62
SYNE1-217ENST00000466159 MARF1Q9Y4F3 1742 aaKnown RBP11.15□□□□□ -0.62
SYNE1-217ENST00000466159 SLC4A10Q6U841 1118 aa11.15□□□□□ -0.62
SYNE1-217ENST00000466159 C14orf37Q86TY3 774 aa11.15□□□□□ -0.62
SYNE1-217ENST00000466159 HSCBQ8IWL3 235 aa11.15□□□□□ -0.62
SYNE1-217ENST00000466159 RPAP2Q8IXW5 612 aaPredicted RBP11.15□□□□□ -0.62
SYNE1-217ENST00000466159 APBB1O00213 710 aa11.14□□□□□ -0.63
SYNE1-217ENST00000466159 AEBP2Q6ZN18 517 aaPredicted RBP11.14□□□□□ -0.63
SYNE1-217ENST00000466159 KIF2CQ99661 725 aa11.14□□□□□ -0.63
SYNE1-217ENST00000466159 OTUD7AQ8TE49 926 aaPredicted RBP11.14□□□□□ -0.63
SYNE1-217ENST00000466159 GNAT3A8MTJ3 354 aa11.13□□□□□ -0.63
SYNE1-217ENST00000466159 SMARCA5O60264 1052 aaPredicted RBP11.13□□□□□ -0.63
SYNE1-217ENST00000466159 IL27Q8NEV9 243 aa11.13□□□□□ -0.63
SYNE1-217ENST00000466159 USHBP1Q8N6Y0 703 aa11.13□□□□□ -0.63
SYNE1-217ENST00000466159 NECTIN2Q92692 538 aa11.13□□□□□ -0.63
SYNE1-217ENST00000466159 NWD1Q149M9 1564 aa11.13□□□□□ -0.63
SYNE1-217ENST00000466159 CDC45O75419 566 aa11.12□□□□□ -0.63
SYNE1-217ENST00000466159 IL17REQ8NFR9 667 aa11.12□□□□□ -0.63
SYNE1-217ENST00000466159 PHF8Q9UPP1 1060 aa11.12□□□□□ -0.63
SYNE1-217ENST00000466159 HTATSF1O43719 755 aaKnown RBP11.12□□□□□ -0.63
SYNE1-217ENST00000466159 TTC22Q5TAA0 569 aa11.12□□□□□ -0.63
SYNE1-217ENST00000466159 SNX21Q969T3 373 aa11.12□□□□□ -0.63
SYNE1-217ENST00000466159 CHMP5Q9NZZ3 219 aa11.12□□□□□ -0.63
SYNE1-217ENST00000466159 SETD1BQ9UPS6 1966 aaKnown RBP11.12□□□□□ -0.63
SYNE1-217ENST00000466159 STK31Q9BXU1 1019 aa11.11□□□□□ -0.63
SYNE1-217ENST00000466159 CD2BP2O95400 341 aaKnown RBP11.11□□□□□ -0.63
SYNE1-217ENST00000466159 RBM42Q9BTD8 480 aaKnown RBP11.11□□□□□ -0.63
SYNE1-217ENST00000466159 BRPF3Q9ULD4 1205 aa11.11□□□□□ -0.63
SYNE1-217ENST00000466159 CCT4P50991 539 aaKnown RBP11.1□□□□□ -0.63
SYNE1-217ENST00000466159 ANKLE2Q86XL3 938 aa11.1□□□□□ -0.63
SYNE1-217ENST00000466159 FLIIQ13045 1269 aa11.1□□□□□ -0.63
SYNE1-217ENST00000466159 LRRC37A3O60309 1634 aa11.1□□□□□ -0.63
SYNE1-217ENST00000466159 MAP3K5Q99683 1374 aa11.1□□□□□ -0.63
SYNE1-217ENST00000466159 CHD2O14647 1828 aaKnown RBP11.1□□□□□ -0.63
SYNE1-217ENST00000466159 NCOA3Q9Y6Q9 1424 aa11.1□□□□□ -0.63
SYNE1-217ENST00000466159 MCM4P33991 863 aa11.09□□□□□ -0.63
SYNE1-217ENST00000466159 FKBP5Q13451 457 aaPredicted RBP11.09□□□□□ -0.63
SYNE1-217ENST00000466159 CCDC30Q5VVM6 783 aa11.09□□□□□ -0.63
SYNE1-217ENST00000466159 DDIT3P35638 169 aa11.09□□□□□ -0.63
SYNE1-217ENST00000466159 TAF7Q15545 349 aaPredicted RBP11.09□□□□□ -0.63
SYNE1-217ENST00000466159 USP54Q70EL1 1684 aa11.09□□□□□ -0.63
SYNE1-217ENST00000466159 LTN1O94822 1766 aa11.08□□□□□ -0.64
SYNE1-217ENST00000466159 ZBTB7CA1YPR0 619 aa11.08□□□□□ -0.64
SYNE1-217ENST00000466159 HSP90AB1P08238 724 aaKnown RBP11.08□□□□□ -0.64
SYNE1-217ENST00000466159 SDSP20132 328 aa11.08□□□□□ -0.64
SYNE1-217ENST00000466159 ESCO1Q5FWF5 840 aa11.08□□□□□ -0.64
SYNE1-217ENST00000466159 HMMRO75330 724 aa11.08□□□□□ -0.64
SYNE1-217ENST00000466159 GNAI2P04899 355 aa11.07□□□□□ -0.64
SYNE1-217ENST00000466159 PSME1Q06323 249 aa11.07□□□□□ -0.64
SYNE1-217ENST00000466159 NBPF6Q5VWK0 638 aa11.07□□□□□ -0.64
SYNE1-217ENST00000466159 IP6K1Q92551 441 aa11.07□□□□□ -0.64
SYNE1-217ENST00000466159 NBPF4Q96M43 638 aa11.07□□□□□ -0.64
SYNE1-217ENST00000466159 FOXD4L1Q9NU39 408 aa11.07□□□□□ -0.64
SYNE1-217ENST00000466159 FAM208AQ9UK61 1670 aaKnown RBP11.07□□□□□ -0.64
SYNE1-217ENST00000466159 PLEKHG5O94827 1062 aa11.07□□□□□ -0.64
SYNE1-217ENST00000466159 EXOC6BQ9Y2D4 811 aa11.07□□□□□ -0.64
SYNE1-217ENST00000466159 USP26Q9BXU7 913 aa11.06□□□□□ -0.64
SYNE1-217ENST00000466159 RTN4Q9NQC3 1192 aaKnown RBP11.06□□□□□ -0.64
SYNE1-217ENST00000466159 PNMA6EA0A0J9YXQ4 647 aa11.05□□□□□ -0.64
SYNE1-217ENST00000466159 K7ELQ4 463 aaPredicted RBP11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms