RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 USP17L10C9JJH3 530 aa7.8□□□□□ -1.16
VPS41-210ENST00000462429 USP17L13C9JLJ4 530 aa7.8□□□□□ -1.16
VPS41-210ENST00000462429 USP17L12C9JPN9 530 aa7.8□□□□□ -1.16
VPS41-210ENST00000462429 USP17L11C9JVI0 530 aa7.8□□□□□ -1.16
VPS41-210ENST00000462429 USP17L21D6R901 530 aa7.8□□□□□ -1.16
VPS41-210ENST00000462429 USP17L18D6R9N7 530 aa7.8□□□□□ -1.16
VPS41-210ENST00000462429 USP17L22D6RA61 530 aa7.8□□□□□ -1.16
VPS41-210ENST00000462429 USP17L17D6RBQ6 530 aa7.8□□□□□ -1.16
VPS41-210ENST00000462429 USP17L19D6RCP7 530 aa7.8□□□□□ -1.16
VPS41-210ENST00000462429 USP17L20D6RJB6 530 aa7.8□□□□□ -1.16
VPS41-210ENST00000462429 J3QL48 77 aa7.8□□□□□ -1.16
VPS41-210ENST00000462429 USP17L24Q0WX57 530 aa7.8□□□□□ -1.16
VPS41-210ENST00000462429 ELOAQ14241 798 aaKnown RBP7.8□□□□□ -1.16
VPS41-210ENST00000462429 TRIM67Q6ZTA4 783 aa7.8□□□□□ -1.16
VPS41-210ENST00000462429 LARGE2Q8N3Y3 721 aa7.8□□□□□ -1.16
VPS41-210ENST00000462429 ZNF784Q8NCA9 323 aaPredicted RBP7.8□□□□□ -1.16
VPS41-210ENST00000462429 DNAAF2Q9NVR5 837 aaKnown RBP7.8□□□□□ -1.16
VPS41-210ENST00000462429 SCTRP47872 440 aa7.79□□□□□ -1.16
VPS41-210ENST00000462429 PSME1Q06323 249 aa7.79□□□□□ -1.16
VPS41-210ENST00000462429 CRTC2Q53ET0 693 aaPredicted RBP7.79□□□□□ -1.16
VPS41-210ENST00000462429 RETREG2Q8NC44 543 aa7.79□□□□□ -1.16
VPS41-210ENST00000462429 NOVA2Q9UNW9 492 aaKnown RBP7.79□□□□□ -1.16
VPS41-210ENST00000462429 RBM19Q9Y4C8 960 aaKnown RBP7.79□□□□□ -1.16
VPS41-210ENST00000462429 SMPD1P17405 629 aa7.78□□□□□ -1.16
VPS41-210ENST00000462429 CLDN10P78369 228 aa7.78□□□□□ -1.16
VPS41-210ENST00000462429 PTK7Q13308 1070 aa7.78□□□□□ -1.16
VPS41-210ENST00000462429 PDZRN3Q9UPQ7 1066 aa7.78□□□□□ -1.16
VPS41-210ENST00000462429 USTQ9Y2C2 406 aa7.78□□□□□ -1.16
VPS41-210ENST00000462429 LILRA1O75019 489 aa7.77□□□□□ -1.17
VPS41-210ENST00000462429 PDIA4P13667 645 aaKnown RBP7.77□□□□□ -1.17
VPS41-210ENST00000462429 WDR4P57081 412 aaKnown RBP7.77□□□□□ -1.17
VPS41-210ENST00000462429 CYP2U1Q7Z449 544 aa7.77□□□□□ -1.17
VPS41-210ENST00000462429 ANKMY2Q8IV38 441 aa7.77□□□□□ -1.17
VPS41-210ENST00000462429 ZNF594Q96JF6 807 aaPredicted RBP7.77□□□□□ -1.17
VPS41-210ENST00000462429 OSBPL3Q9H4L5 887 aa7.77□□□□□ -1.17
VPS41-210ENST00000462429 PCDHGA11Q9Y5H2 935 aa7.77□□□□□ -1.17
VPS41-210ENST00000462429 ZIC2O95409 532 aaPredicted RBP7.76□□□□□ -1.17
VPS41-210ENST00000462429 CCDC102BQ68D86 513 aa7.76□□□□□ -1.17
VPS41-210ENST00000462429 SIX5Q8N196 739 aa7.76□□□□□ -1.17
VPS41-210ENST00000462429 FAM200AQ8TCP9 573 aa7.76□□□□□ -1.17
VPS41-210ENST00000462429 ZBTB7BO15156 539 aaPredicted RBP7.75□□□□□ -1.17
VPS41-210ENST00000462429 DPYDQ12882 1025 aa7.75□□□□□ -1.17
VPS41-210ENST00000462429 TPCN2Q8NHX9 752 aa7.75□□□□□ -1.17
VPS41-210ENST00000462429 ITPKCQ96DU7 683 aa7.75□□□□□ -1.17
VPS41-210ENST00000462429 KLF16Q9BXK1 252 aaPredicted RBP7.75□□□□□ -1.17
VPS41-210ENST00000462429 ZMIZ1Q9ULJ6 1067 aa7.75□□□□□ -1.17
VPS41-210ENST00000462429 KIAA1024Q9UPX6 916 aa7.75□□□□□ -1.17
VPS41-210ENST00000462429 TIMP2P16035 220 aa7.74□□□□□ -1.17
VPS41-210ENST00000462429 ADD1P35611 737 aaKnown RBP7.74□□□□□ -1.17
VPS41-210ENST00000462429 SEC13P55735 322 aa7.74□□□□□ -1.17
VPS41-210ENST00000462429 STK32AQ8WU08 396 aa7.74□□□□□ -1.17
VPS41-210ENST00000462429 HPS1Q92902 700 aa7.74□□□□□ -1.17
VPS41-210ENST00000462429 GNRH1P01148 92 aa7.73□□□□□ -1.17
VPS41-210ENST00000462429 ADH1AP07327 375 aa7.73□□□□□ -1.17
VPS41-210ENST00000462429 ESCO1Q5FWF5 840 aa7.73□□□□□ -1.17
VPS41-210ENST00000462429 TMEM164Q5U3C3 297 aa7.73□□□□□ -1.17
VPS41-210ENST00000462429 Q6ZVU0 165 aa7.73□□□□□ -1.17
VPS41-210ENST00000462429 TRAIPQ9BWF2 469 aa7.73□□□□□ -1.17
VPS41-210ENST00000462429 ZFAND3Q9H8U3 227 aa7.73□□□□□ -1.17
VPS41-210ENST00000462429 FAM187AA6NFU0 413 aa7.72□□□□□ -1.17
VPS41-210ENST00000462429 CBLBQ13191 982 aa7.72□□□□□ -1.17
VPS41-210ENST00000462429 TMEM88BA6NKF7 163 aa7.71□□□□□ -1.18
VPS41-210ENST00000462429 WASLO00401 505 aaPredicted RBP7.71□□□□□ -1.18
VPS41-210ENST00000462429 BACH1O14867 736 aa7.71□□□□□ -1.18
VPS41-210ENST00000462429 DKK1O94907 266 aa7.71□□□□□ -1.18
VPS41-210ENST00000462429 GDF10P55107 478 aa7.71□□□□□ -1.18
VPS41-210ENST00000462429 SWI5Q1ZZU3 235 aa7.71□□□□□ -1.18
VPS41-210ENST00000462429 SFI1A8K8P3 1242 aa7.7□□□□□ -1.18
VPS41-210ENST00000462429 M0R2N6 131 aa7.7□□□□□ -1.18
VPS41-210ENST00000462429 NRG2O14511 850 aaPredicted RBP7.7□□□□□ -1.18
VPS41-210ENST00000462429 CAPN5O15484 640 aaPredicted RBP7.7□□□□□ -1.18
VPS41-210ENST00000462429 GFRA3O60609 400 aa7.7□□□□□ -1.18
VPS41-210ENST00000462429 INHAP05111 366 aa7.7□□□□□ -1.18
VPS41-210ENST00000462429 SCNN1DP51172 638 aa7.7□□□□□ -1.18
VPS41-210ENST00000462429 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.7□□□□□ -1.18
VPS41-210ENST00000462429 ARHGEF10LQ9HCE6 1279 aa7.7□□□□□ -1.18
VPS41-210ENST00000462429 TMEM229AB2RXF0 380 aa7.69□□□□□ -1.18
VPS41-210ENST00000462429 DGAT1O75907 488 aa7.69□□□□□ -1.18
VPS41-210ENST00000462429 PTGIRP43119 386 aa7.69□□□□□ -1.18
VPS41-210ENST00000462429 LAPTM4AQ15012 233 aa7.69□□□□□ -1.18
VPS41-210ENST00000462429 PKDCCQ504Y2 493 aa7.69□□□□□ -1.18
VPS41-210ENST00000462429 B4GALNT3Q6L9W6 998 aa7.69□□□□□ -1.18
VPS41-210ENST00000462429 MEIOBQ8N635 442 aa7.69□□□□□ -1.18
VPS41-210ENST00000462429 ETNK1Q9HBU6 452 aa7.69□□□□□ -1.18
VPS41-210ENST00000462429 ZNF358Q9NW07 568 aa7.69□□□□□ -1.18
VPS41-210ENST00000462429 UPP2O95045 317 aa7.68□□□□□ -1.18
VPS41-210ENST00000462429 AVPP01185 164 aa7.68□□□□□ -1.18
VPS41-210ENST00000462429 RELBQ01201 579 aa7.68□□□□□ -1.18
VPS41-210ENST00000462429 AGBL1Q96MI9 1066 aa7.68□□□□□ -1.18
VPS41-210ENST00000462429 TSEN34Q9BSV6 310 aaKnown RBP7.68□□□□□ -1.18
VPS41-210ENST00000462429 RAB6BQ9NRW1 208 aa7.68□□□□□ -1.18
VPS41-210ENST00000462429 A0A1W2PRU2 124 aa7.67□□□□□ -1.18
VPS41-210ENST00000462429 FAM69CQ0P6D2 419 aa7.67□□□□□ -1.18
VPS41-210ENST00000462429 CLN3Q13286 438 aa7.67□□□□□ -1.18
VPS41-210ENST00000462429 CTC1Q2NKJ3 1217 aa7.67□□□□□ -1.18
VPS41-210ENST00000462429 CLP1Q92989 425 aaKnown RBP7.67□□□□□ -1.18
VPS41-210ENST00000462429 NLRP3Q96P20 1036 aa7.67□□□□□ -1.18
VPS41-210ENST00000462429 HINFPQ9BQA5 517 aa7.67□□□□□ -1.18
VPS41-210ENST00000462429 CARNS1A5YM72 827 aa7.66□□□□□ -1.18
VPS41-210ENST00000462429 STAU1O95793 577 aaKnown RBP7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms