RNA–Protein interactions for RNA: ENST00000460110.5

NUDCD3-203, Transcript of NudC domain containing 3, humanhuman

TSL 1 (best)

Gene NUDCD3, Length 3,641 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3-203ENST00000460110 G2E3Q7L622 706 aa11.77□□□□□ -0.52
NUDCD3-203ENST00000460110 UPF2Q9HAU5 1272 aaKnown RBP11.77□□□□□ -0.52
NUDCD3-203ENST00000460110 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.77□□□□□ -0.53
NUDCD3-203ENST00000460110 NOP58Q9Y2X3 529 aaKnown RBP11.77□□□□□ -0.53
NUDCD3-203ENST00000460110 CDC42BPGQ6DT37 1551 aa11.77□□□□□ -0.53
NUDCD3-203ENST00000460110 ALDH1L2Q3SY69 923 aa11.77□□□□□ -0.53
NUDCD3-203ENST00000460110 IL17REQ8NFR9 667 aa11.77□□□□□ -0.53
NUDCD3-203ENST00000460110 LRRC7Q96NW7 1537 aa11.76□□□□□ -0.53
NUDCD3-203ENST00000460110 TOM1L2Q6ZVM7 507 aa11.76□□□□□ -0.53
NUDCD3-203ENST00000460110 DDX54Q8TDD1 881 aaKnown RBP11.76□□□□□ -0.53
NUDCD3-203ENST00000460110 PIK3R4Q99570 1358 aa11.76□□□□□ -0.53
NUDCD3-203ENST00000460110 SLIT1O75093 1534 aa11.76□□□□□ -0.53
NUDCD3-203ENST00000460110 TAF7Q15545 349 aaPredicted RBP11.76□□□□□ -0.53
NUDCD3-203ENST00000460110 SPRYD3Q8NCJ5 442 aa11.76□□□□□ -0.53
NUDCD3-203ENST00000460110 PTCH1Q13635 1447 aa11.76□□□□□ -0.53
NUDCD3-203ENST00000460110 MAP2P11137 1827 aaKnown RBP11.76□□□□□ -0.53
NUDCD3-203ENST00000460110 BTBD11A6QL63 1104 aa11.75□□□□□ -0.53
NUDCD3-203ENST00000460110 MFAP1P55081 439 aaKnown RBP11.75□□□□□ -0.53
NUDCD3-203ENST00000460110 MSH6P52701 1360 aa11.75□□□□□ -0.53
NUDCD3-203ENST00000460110 MED14O60244 1454 aa11.75□□□□□ -0.53
NUDCD3-203ENST00000460110 CHL1O00533 1208 aa11.75□□□□□ -0.53
NUDCD3-203ENST00000460110 KCNQ3O43525 872 aa11.75□□□□□ -0.53
NUDCD3-203ENST00000460110 SLC39A6Q13433 755 aa11.75□□□□□ -0.53
NUDCD3-203ENST00000460110 CDK12Q9NYV4 1490 aaPredicted RBP11.75□□□□□ -0.53
NUDCD3-203ENST00000460110 DIP2AQ14689 1571 aa11.75□□□□□ -0.53
NUDCD3-203ENST00000460110 KDM2BQ8NHM5 1336 aa11.75□□□□□ -0.53
NUDCD3-203ENST00000460110 COL3A1P02461 1466 aaPredicted RBP11.74□□□□□ -0.53
NUDCD3-203ENST00000460110 PIP4K2BP78356 416 aa11.74□□□□□ -0.53
NUDCD3-203ENST00000460110 OVOS2A0A0J9YW53 1432 aa11.74□□□□□ -0.53
NUDCD3-203ENST00000460110 OVOS2Q6IE36 1432 aa11.74□□□□□ -0.53
NUDCD3-203ENST00000460110 IPO9Q96P70 1041 aaKnown RBP11.74□□□□□ -0.53
NUDCD3-203ENST00000460110 NPHP3Q7Z494 1330 aa11.74□□□□□ -0.53
NUDCD3-203ENST00000460110 PIP4K2AP48426 406 aaPredicted RBP11.74□□□□□ -0.53
NUDCD3-203ENST00000460110 KDM4FA0A1W2PPD8 638 aa11.73□□□□□ -0.53
NUDCD3-203ENST00000460110 IGSF1Q8N6C5 1336 aa11.73□□□□□ -0.53
NUDCD3-203ENST00000460110 TATP17735 454 aaPredicted RBP11.73□□□□□ -0.53
NUDCD3-203ENST00000460110 CCDC30Q5VVM6 783 aa11.73□□□□□ -0.53
NUDCD3-203ENST00000460110 ARHGEF25Q86VW2 580 aa11.73□□□□□ -0.53
NUDCD3-203ENST00000460110 SLAIN2Q9P270 581 aa11.73□□□□□ -0.53
NUDCD3-203ENST00000460110 CCDC9Q9Y3X0 531 aaKnown RBP11.73□□□□□ -0.53
NUDCD3-203ENST00000460110 ADGRL3Q9HAR2 1447 aa11.73□□□□□ -0.53
NUDCD3-203ENST00000460110 KAT6BQ8WYB5 2073 aa11.73□□□□□ -0.53
NUDCD3-203ENST00000460110 IQSEC2Q5JU85 1478 aa11.73□□□□□ -0.53
NUDCD3-203ENST00000460110 CHMP4BQ9H444 224 aaKnown RBP11.73□□□□□ -0.53
NUDCD3-203ENST00000460110 ZNF853P0CG23 659 aa11.72□□□□□ -0.53
NUDCD3-203ENST00000460110 MEIS3Q99687 375 aa11.72□□□□□ -0.53
NUDCD3-203ENST00000460110 MYL6BP14649 208 aa11.72□□□□□ -0.53
NUDCD3-203ENST00000460110 NUTM2BA6NNL0 878 aaPredicted RBP11.72□□□□□ -0.53
NUDCD3-203ENST00000460110 NUTM2EB1AL46 878 aaPredicted RBP11.72□□□□□ -0.53
NUDCD3-203ENST00000460110 NUTM2AQ8IVF1 878 aaPredicted RBP11.72□□□□□ -0.53
NUDCD3-203ENST00000460110 SYTL4Q96C24 671 aaPredicted RBP11.72□□□□□ -0.53
NUDCD3-203ENST00000460110 ZBTB40Q9NUA8 1239 aa11.72□□□□□ -0.53
NUDCD3-203ENST00000460110 PHAXQ9H814 394 aaKnown RBP11.71□□□□□ -0.54
NUDCD3-203ENST00000460110 USP31Q70CQ4 1352 aa11.71□□□□□ -0.54
NUDCD3-203ENST00000460110 SMARCA5O60264 1052 aaPredicted RBP11.71□□□□□ -0.54
NUDCD3-203ENST00000460110 ADAMTS2O95450 1211 aa11.71□□□□□ -0.54
NUDCD3-203ENST00000460110 FLIIQ13045 1269 aa11.71□□□□□ -0.54
NUDCD3-203ENST00000460110 SHPRHQ149N8 1683 aa11.7□□□□□ -0.54
NUDCD3-203ENST00000460110 OS9Q13438 667 aaPredicted RBP11.7□□□□□ -0.54
NUDCD3-203ENST00000460110 RTL5Q5HYW3 569 aaPredicted RBP11.7□□□□□ -0.54
NUDCD3-203ENST00000460110 ZBTB7BO15156 539 aaPredicted RBP11.69□□□□□ -0.54
NUDCD3-203ENST00000460110 PTCD1O75127 700 aaKnown RBP11.69□□□□□ -0.54
NUDCD3-203ENST00000460110 SEC24BO95487 1268 aa11.69□□□□□ -0.54
NUDCD3-203ENST00000460110 TTC5Q8N0Z6 440 aa11.69□□□□□ -0.54
NUDCD3-203ENST00000460110 NFATC2IPQ8NCF5 419 aa11.69□□□□□ -0.54
NUDCD3-203ENST00000460110 ANKARQ7Z5J8 1434 aa11.69□□□□□ -0.54
NUDCD3-203ENST00000460110 ARHGEF10O15013 1369 aa11.69□□□□□ -0.54
NUDCD3-203ENST00000460110 CHPF2Q9P2E5 772 aa11.69□□□□□ -0.54
NUDCD3-203ENST00000460110 MAP3K5Q99683 1374 aa11.69□□□□□ -0.54
NUDCD3-203ENST00000460110 EXOC6BQ9Y2D4 811 aa11.68□□□□□ -0.54
NUDCD3-203ENST00000460110 PRAMEF22A3QJZ6 481 aa11.68□□□□□ -0.54
NUDCD3-203ENST00000460110 BRINP3Q76B58 766 aa11.68□□□□□ -0.54
NUDCD3-203ENST00000460110 USP32Q8NFA0 1604 aa11.68□□□□□ -0.54
NUDCD3-203ENST00000460110 NCBP3Q53F19 620 aaKnown RBP11.67□□□□□ -0.54
NUDCD3-203ENST00000460110 SLKQ9H2G2 1235 aaPredicted RBP11.67□□□□□ -0.54
NUDCD3-203ENST00000460110 C8orf34Q49A92 452 aa11.67□□□□□ -0.54
NUDCD3-203ENST00000460110 AMOTQ4VCS5 1084 aa11.67□□□□□ -0.54
NUDCD3-203ENST00000460110 CHD1LQ86WJ1 897 aa11.67□□□□□ -0.54
NUDCD3-203ENST00000460110 SETD1AO15047 1707 aaKnown RBP11.67□□□□□ -0.54
NUDCD3-203ENST00000460110 PI4KAP2A4QPH2 592 aa11.67□□□□□ -0.54
NUDCD3-203ENST00000460110 C16orf71Q8IYS4 520 aaPredicted RBP11.67□□□□□ -0.54
NUDCD3-203ENST00000460110 PI4KAP1Q8N8J0 262 aa11.67□□□□□ -0.54
NUDCD3-203ENST00000460110 JARID2Q92833 1246 aaPredicted RBP11.67□□□□□ -0.54
NUDCD3-203ENST00000460110 C9orf78Q9NZ63 289 aaPredicted RBP11.67□□□□□ -0.54
NUDCD3-203ENST00000460110 RGPD8O14715 1765 aaPredicted RBP11.66□□□□□ -0.54
NUDCD3-203ENST00000460110 CABP4P57796 275 aa11.66□□□□□ -0.54
NUDCD3-203ENST00000460110 AKAP4Q5JQC9 854 aa11.66□□□□□ -0.54
NUDCD3-203ENST00000460110 SPG7Q9UQ90 795 aa11.66□□□□□ -0.54
NUDCD3-203ENST00000460110 KIAA0232Q92628 1395 aa11.66□□□□□ -0.54
NUDCD3-203ENST00000460110 C1orf167Q5SNV9 1468 aa11.66□□□□□ -0.54
NUDCD3-203ENST00000460110 SSH2Q76I76 1423 aa11.66□□□□□ -0.54
NUDCD3-203ENST00000460110 KIF20BQ96Q89 1820 aa11.66□□□□□ -0.54
NUDCD3-203ENST00000460110 TSHZ3Q63HK5 1081 aa11.66□□□□□ -0.54
NUDCD3-203ENST00000460110 RNMTO43148 476 aaKnown RBP11.65□□□□□ -0.54
NUDCD3-203ENST00000460110 UBTFL1P0CB47 393 aaPredicted RBP11.65□□□□□ -0.54
NUDCD3-203ENST00000460110 AAMPQ13685 434 aa11.65□□□□□ -0.54
NUDCD3-203ENST00000460110 HMMRO75330 724 aa11.65□□□□□ -0.54
NUDCD3-203ENST00000460110 ARHGAP45Q92619 1136 aa11.65□□□□□ -0.54
NUDCD3-203ENST00000460110 DDRGK1Q96HY6 314 aa11.65□□□□□ -0.54
NUDCD3-203ENST00000460110 ITSN1Q15811 1721 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms