RNA–Protein interactions for RNA: ENST00000449223.3

RPS28-202, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 1,523 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-202ENST00000449223 NEUROD2Q15784 382 aa25.31■■□□□ 1.64
RPS28-202ENST00000449223 WDR63Q8IWG1 891 aa25.31■■□□□ 1.64
RPS28-202ENST00000449223 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.31■■□□□ 1.64
RPS28-202ENST00000449223 OVOS2A0A0G2JMS6 1433 aa25.31■■□□□ 1.64
RPS28-202ENST00000449223 BCL9LQ86UU0 1499 aa25.3■■□□□ 1.64
RPS28-202ENST00000449223 RAPGEF4Q8WZA2 1011 aa25.3■■□□□ 1.64
RPS28-202ENST00000449223 GOLGA2Q08379 1002 aa25.28■■□□□ 1.64
RPS28-202ENST00000449223 HTATSF1O43719 755 aaKnown RBP25.27■■□□□ 1.64
RPS28-202ENST00000449223 PLEKHO1Q53GL0 409 aaPredicted RBP25.27■■□□□ 1.64
RPS28-202ENST00000449223 IL16Q14005 1332 aa25.27■■□□□ 1.64
RPS28-202ENST00000449223 DISP2A7MBM2 1401 aa25.27■■□□□ 1.64
RPS28-202ENST00000449223 LRRC37A3O60309 1634 aa25.27■■□□□ 1.64
RPS28-202ENST00000449223 TATP17735 454 aaPredicted RBP25.27■■□□□ 1.64
RPS28-202ENST00000449223 ADAMTS7Q9UKP4 1686 aa25.26■■□□□ 1.63
RPS28-202ENST00000449223 UNC5CLQ8IV45 518 aa25.26■■□□□ 1.63
RPS28-202ENST00000449223 C8orf37Q96NL8 207 aa25.26■■□□□ 1.63
RPS28-202ENST00000449223 MAP3K5Q99683 1374 aa25.25■■□□□ 1.63
RPS28-202ENST00000449223 TRMT2AQ8IZ69 625 aaKnown RBP25.25■■□□□ 1.63
RPS28-202ENST00000449223 NGLY1Q96IV0 654 aa25.25■■□□□ 1.63
RPS28-202ENST00000449223 THRAP3Q9Y2W1 955 aaKnown RBP25.24■■□□□ 1.63
RPS28-202ENST00000449223 SHANK3Q9BYB0 1731 aa25.24■■□□□ 1.63
RPS28-202ENST00000449223 E9PSI1 815 aa25.23■■□□□ 1.63
RPS28-202ENST00000449223 IL2RBP14784 551 aa25.23■■□□□ 1.63
RPS28-202ENST00000449223 SLFN5Q08AF3 891 aa25.23■■□□□ 1.63
RPS28-202ENST00000449223 SPATA31A1Q5TZJ5 1347 aa25.23■■□□□ 1.63
RPS28-202ENST00000449223 CALD1Q05682 793 aaKnown RBP25.22■■□□□ 1.63
RPS28-202ENST00000449223 SPATA31A5Q5VU36 1347 aa25.22■■□□□ 1.63
RPS28-202ENST00000449223 SPATA31A7Q8IWB4 1347 aa25.22■■□□□ 1.63
RPS28-202ENST00000449223 GNAT3A8MTJ3 354 aa25.22■■□□□ 1.63
RPS28-202ENST00000449223 AKAP4Q5JQC9 854 aa25.22■■□□□ 1.63
RPS28-202ENST00000449223 SPG7Q9UQ90 795 aa25.22■■□□□ 1.63
RPS28-202ENST00000449223 VIRMAQ69YN4 1812 aaKnown RBP25.22■■□□□ 1.63
RPS28-202ENST00000449223 VPS72Q15906 364 aa25.21■■□□□ 1.63
RPS28-202ENST00000449223 CDCA7LQ96GN5 454 aa25.21■■□□□ 1.63
RPS28-202ENST00000449223 DUSP27Q5VZP5 1158 aa25.19■■□□□ 1.62
RPS28-202ENST00000449223 ZNF530Q6P9A1 599 aaPredicted RBP25.19■■□□□ 1.62
RPS28-202ENST00000449223 SPINK5Q9NQ38 1064 aaPredicted RBP25.19■■□□□ 1.62
RPS28-202ENST00000449223 CEMIPQ8WUJ3 1361 aa25.19■■□□□ 1.62
RPS28-202ENST00000449223 MEX3CQ5U5Q3 659 aaKnown RBP25.18■■□□□ 1.62
RPS28-202ENST00000449223 CDCA7Q9BWT1 371 aaPredicted RBP25.18■■□□□ 1.62
RPS28-202ENST00000449223 BARGINQ6ZT62 677 aa25.17■■□□□ 1.62
RPS28-202ENST00000449223 RTF1Q92541 710 aaKnown RBP25.17■■□□□ 1.62
RPS28-202ENST00000449223 USP21Q9UK80 565 aa25.17■■□□□ 1.62
RPS28-202ENST00000449223 SCN11AQ9UI33 1791 aa25.16■■□□□ 1.62
RPS28-202ENST00000449223 ZNF853P0CG23 659 aa25.16■■□□□ 1.62
RPS28-202ENST00000449223 AFF2P51816 1311 aa25.15■■□□□ 1.62
RPS28-202ENST00000449223 PCDH11XQ9BZA7 1347 aa25.15■■□□□ 1.62
RPS28-202ENST00000449223 PCDH11YQ9BZA8 1340 aa25.15■■□□□ 1.62
RPS28-202ENST00000449223 C1orf141Q5JVX7 400 aa25.15■■□□□ 1.62
RPS28-202ENST00000449223 ZCRB1Q8TBF4 217 aaKnown RBP25.15■■□□□ 1.62
RPS28-202ENST00000449223 IFT57Q9NWB7 429 aa25.15■■□□□ 1.62
RPS28-202ENST00000449223 USP35Q9P2H5 1018 aa25.15■■□□□ 1.62
RPS28-202ENST00000449223 ATRNO75882 1429 aa25.14■■□□□ 1.62
RPS28-202ENST00000449223 PHKG2P15735 406 aa25.14■■□□□ 1.62
RPS28-202ENST00000449223 MCM10Q7L590 875 aa25.14■■□□□ 1.62
RPS28-202ENST00000449223 IFNL2Q8IZJ0 200 aa25.14■■□□□ 1.62
RPS28-202ENST00000449223 MYH16Q9H6N6 1097 aa25.14■■□□□ 1.62
RPS28-202ENST00000449223 TNS2Q63HR2 1409 aa25.13■■□□□ 1.61
RPS28-202ENST00000449223 CYP27B1O15528 508 aa25.13■■□□□ 1.61
RPS28-202ENST00000449223 DCTN1Q14203 1278 aa25.13■■□□□ 1.61
RPS28-202ENST00000449223 IL17REQ8NFR9 667 aa25.13■■□□□ 1.61
RPS28-202ENST00000449223 THUMPD2Q9BTF0 503 aaKnown RBP25.13■■□□□ 1.61
RPS28-202ENST00000449223 SIPA1L3O60292 1781 aaPredicted RBP25.13■■□□□ 1.61
RPS28-202ENST00000449223 CFAP44Q96MT7 982 aa25.12■■□□□ 1.61
RPS28-202ENST00000449223 GNAI1P63096 354 aa25.12■■□□□ 1.61
RPS28-202ENST00000449223 GLI3P10071 1580 aa25.11■■□□□ 1.61
RPS28-202ENST00000449223 HSP90AB1P08238 724 aaKnown RBP25.11■■□□□ 1.61
RPS28-202ENST00000449223 MRC1P22897 1456 aa25.11■■□□□ 1.61
RPS28-202ENST00000449223 KDM6AO15550 1401 aaPredicted RBP25.1■■□□□ 1.61
RPS28-202ENST00000449223 THSD7AQ9UPZ6 1657 aa25.1■■□□□ 1.61
RPS28-202ENST00000449223 NKX1-1Q15270 411 aaPredicted RBP25.1■■□□□ 1.61
RPS28-202ENST00000449223 FANCIQ9NVI1 1328 aa25.09■■□□□ 1.61
RPS28-202ENST00000449223 BABAM1Q9NWV8 329 aa25.09■■□□□ 1.61
RPS28-202ENST00000449223 RNMTO43148 476 aaKnown RBP25.08■■□□□ 1.61
RPS28-202ENST00000449223 DCAF5Q96JK2 942 aa25.08■■□□□ 1.61
RPS28-202ENST00000449223 CHL1O00533 1208 aa25.07■■□□□ 1.6
RPS28-202ENST00000449223 TRPC5Q9UL62 973 aaPredicted RBP25.07■■□□□ 1.6
RPS28-202ENST00000449223 MPRIPQ6WCQ1 1025 aa25.07■■□□□ 1.6
RPS28-202ENST00000449223 LGR6Q9HBX8 967 aa25.07■■□□□ 1.6
RPS28-202ENST00000449223 CCDC9Q9Y3X0 531 aaKnown RBP25.07■■□□□ 1.6
RPS28-202ENST00000449223 KDM3BQ7LBC6 1761 aa25.06■■□□□ 1.6
RPS28-202ENST00000449223 EXOC5O00471 708 aa25.04■■□□□ 1.6
RPS28-202ENST00000449223 GJD4Q96KN9 370 aaPredicted RBP25.04■■□□□ 1.6
RPS28-202ENST00000449223 MBIPQ9NS73 344 aa25.04■■□□□ 1.6
RPS28-202ENST00000449223 TAF7Q15545 349 aaPredicted RBP25.03■■□□□ 1.6
RPS28-202ENST00000449223 TSR2Q969E8 191 aaKnown RBP25.03■■□□□ 1.6
RPS28-202ENST00000449223 TOGARAM1Q9Y4F4 1720 aa25.03■■□□□ 1.6
RPS28-202ENST00000449223 ONECUT3O60422 494 aaPredicted RBP25.02■■□□□ 1.6
RPS28-202ENST00000449223 CT47B1P0C2W7 299 aaPredicted RBP25.02■■□□□ 1.6
RPS28-202ENST00000449223 DDB1Q16531 1140 aa25.02■■□□□ 1.6
RPS28-202ENST00000449223 TEFQ10587 303 aa25.01■■□□□ 1.59
RPS28-202ENST00000449223 FAM98CQ17RN3 349 aaKnown RBP25■■□□□ 1.59
RPS28-202ENST00000449223 ZNF772Q68DY9 489 aaPredicted RBP24.99■■□□□ 1.59
RPS28-202ENST00000449223 DDX54Q8TDD1 881 aaKnown RBP24.99■■□□□ 1.59
RPS28-202ENST00000449223 SLC52A2Q9HAB3 445 aa24.99■■□□□ 1.59
RPS28-202ENST00000449223 LAS1LQ9Y4W2 734 aaKnown RBP24.99■■□□□ 1.59
RPS28-202ENST00000449223 ERVV-2B6SEH9 535 aa24.98■■□□□ 1.59
RPS28-202ENST00000449223 QTRT2Q9H974 415 aaKnown RBP24.97■■□□□ 1.59
RPS28-202ENST00000449223 EXOSC9Q06265 439 aaKnown RBP24.96■■□□□ 1.59
RPS28-202ENST00000449223 TSPYL4Q9UJ04 414 aa24.96■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms