RNA–Protein interactions for RNA: ENST00000446312.5

DDR1-238, Transcript of discoidin domain receptor tyrosine kinase 1, human

TSL 5 BASIC

Gene DDR1, Length 3,202 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDR1-238	ENST00000446312	TPM2	P07951	284 aa		15.35	■□□□□ 0.05
DDR1-238	ENST00000446312	ALDH1L2	Q3SY69	923 aa		15.35	■□□□□ 0.05
DDR1-238	ENST00000446312	CPA1	P15085	419 aa		15.34	■□□□□ 0.05
DDR1-238	ENST00000446312	SIGLEC1	Q9BZZ2	1709 aa		15.34	■□□□□ 0.05
DDR1-238	ENST00000446312	VGLL3	A8MV65	326 aa		15.34	■□□□□ 0.05
DDR1-238	ENST00000446312	CT47B1	P0C2W7	299 aa	Predicted RBP	15.34	■□□□□ 0.05
DDR1-238	ENST00000446312	TMEM63C	Q9P1W3	806 aa		15.34	■□□□□ 0.05
DDR1-238	ENST00000446312	TAOK2	Q9UL54	1235 aa		15.34	■□□□□ 0.05
DDR1-238	ENST00000446312	ABCC11	Q96J66	1382 aa		15.34	■□□□□ 0.05
DDR1-238	ENST00000446312	TULP4	Q9NRJ4	1543 aa		15.34	■□□□□ 0.05
DDR1-238	ENST00000446312	NUTM1	Q86Y26	1132 aa		15.34	■□□□□ 0.05
DDR1-238	ENST00000446312	API5	Q9BZZ5	524 aa	Known RBP	15.33	■□□□□ 0.04
DDR1-238	ENST00000446312	LMBRD1	Q9NUN5	540 aa		15.33	■□□□□ 0.04
DDR1-238	ENST00000446312	MLH3	Q9UHC1	1453 aa		15.33	■□□□□ 0.04
DDR1-238	ENST00000446312	PPL	O60437	1756 aa		15.33	■□□□□ 0.04
DDR1-238	ENST00000446312	SKOR2	Q2VWA4	1001 aa	Predicted RBP	15.33	■□□□□ 0.04
DDR1-238	ENST00000446312	INTS3	Q68E01	1043 aa	Known RBP	15.33	■□□□□ 0.04
DDR1-238	ENST00000446312	HECW2	Q9P2P5	1572 aa		15.32	■□□□□ 0.04
DDR1-238	ENST00000446312	ST18	O60284	1047 aa		15.32	■□□□□ 0.04
DDR1-238	ENST00000446312	ANXA1	P04083	346 aa		15.32	■□□□□ 0.04
DDR1-238	ENST00000446312	CEP85	Q6P2H3	762 aa		15.32	■□□□□ 0.04
DDR1-238	ENST00000446312	ZDHHC9	Q9Y397	364 aa		15.32	■□□□□ 0.04
DDR1-238	ENST00000446312	MYO3A	Q8NEV4	1616 aa		15.32	■□□□□ 0.04
DDR1-238	ENST00000446312	EIF2S2	P20042	333 aa	Known RBP	15.32	■□□□□ 0.04
DDR1-238	ENST00000446312	IL13	P35225	146 aa		15.32	■□□□□ 0.04
DDR1-238	ENST00000446312	RABEP1	Q15276	862 aa		15.32	■□□□□ 0.04
DDR1-238	ENST00000446312	RBM33	Q96EV2	1170 aa	Known RBP	15.32	■□□□□ 0.04
DDR1-238	ENST00000446312	GADD45B	O75293	160 aa	Predicted RBP	15.31	■□□□□ 0.04
DDR1-238	ENST00000446312	FKBP5	Q13451	457 aa	Predicted RBP	15.31	■□□□□ 0.04
DDR1-238	ENST00000446312	CASC1	Q6TDU7	716 aa		15.31	■□□□□ 0.04
DDR1-238	ENST00000446312	ZSCAN30	Q86W11	494 aa		15.31	■□□□□ 0.04
DDR1-238	ENST00000446312	ADGRB1	O14514	1584 aa		15.31	■□□□□ 0.04
DDR1-238	ENST00000446312	MSH6	P52701	1360 aa		15.31	■□□□□ 0.04
DDR1-238	ENST00000446312	KLHL40	Q2TBA0	621 aa		15.31	■□□□□ 0.04
DDR1-238	ENST00000446312	CFAP44	Q96MT7	982 aa		15.31	■□□□□ 0.04
DDR1-238	ENST00000446312	ABCC3	O15438	1527 aa		15.31	■□□□□ 0.04
DDR1-238	ENST00000446312	UNC5CL	Q8IV45	518 aa		15.3	■□□□□ 0.04
DDR1-238	ENST00000446312	TSPYL4	Q9UJ04	414 aa		15.3	■□□□□ 0.04
DDR1-238	ENST00000446312	CIZ1	Q9ULV3	898 aa	Predicted RBP	15.3	■□□□□ 0.04
DDR1-238	ENST00000446312	CCDC173	Q0VFZ6	552 aa		15.3	■□□□□ 0.04
DDR1-238	ENST00000446312	CYB5RL	Q6IPT4	315 aa		15.3	■□□□□ 0.04
DDR1-238	ENST00000446312	NUDT16	Q96DE0	195 aa	Known RBP	15.3	■□□□□ 0.04
DDR1-238	ENST00000446312	DCTPP1	Q9H773	170 aa		15.3	■□□□□ 0.04
DDR1-238	ENST00000446312	QRICH2	Q9H0J4	1663 aa		15.3	■□□□□ 0.04
DDR1-238	ENST00000446312	USHBP1	Q8N6Y0	703 aa		15.3	■□□□□ 0.04
DDR1-238	ENST00000446312	TMX3	Q96JJ7	454 aa		15.29	■□□□□ 0.04
DDR1-238	ENST00000446312	IFT57	Q9NWB7	429 aa		15.29	■□□□□ 0.04
DDR1-238	ENST00000446312	SBNO2	Q9Y2G9	1366 aa		15.29	■□□□□ 0.04
DDR1-238	ENST00000446312	MAPK8IP2	Q13387	824 aa	Predicted RBP	15.28	■□□□□ 0.04
DDR1-238	ENST00000446312	CCDC9	Q9Y3X0	531 aa	Known RBP	15.28	■□□□□ 0.04
DDR1-238	ENST00000446312	SETBP1	Q9Y6X0	1596 aa		15.28	■□□□□ 0.04
DDR1-238	ENST00000446312	ZC3H13	Q5T200	1668 aa	Known RBP	15.28	■□□□□ 0.04
DDR1-238	ENST00000446312	UQCRHL	A0A096LP55	91 aa		15.28	■□□□□ 0.04
DDR1-238	ENST00000446312	PNMA6E	A0A0J9YXQ4	647 aa		15.28	■□□□□ 0.04
DDR1-238	ENST00000446312	UQCRH	P07919	91 aa		15.28	■□□□□ 0.04
DDR1-238	ENST00000446312	IL25	Q9H293	177 aa		15.28	■□□□□ 0.04
DDR1-238	ENST00000446312	IL16	Q14005	1332 aa		15.27	■□□□□ 0.04
DDR1-238	ENST00000446312	EIF4A2	Q14240	407 aa	Known RBP	15.27	■□□□□ 0.04
DDR1-238	ENST00000446312	CDK11B	P21127	795 aa	Known RBP	15.27	■□□□□ 0.03
DDR1-238	ENST00000446312	NUCB2	P80303	420 aa		15.27	■□□□□ 0.03
DDR1-238	ENST00000446312	IPO4	Q8TEX9	1081 aa	Known RBP	15.27	■□□□□ 0.03
DDR1-238	ENST00000446312	SLC26A8	Q96RN1	970 aa		15.27	■□□□□ 0.03
DDR1-238	ENST00000446312	CAMSAP1	Q5T5Y3	1602 aa		15.26	■□□□□ 0.03
DDR1-238	ENST00000446312	FIBP	O43427	364 aa		15.26	■□□□□ 0.03
DDR1-238	ENST00000446312	PPFIA3	O75145	1194 aa		15.26	■□□□□ 0.03
DDR1-238	ENST00000446312	CFAP74	Q9C0B2	1584 aa		15.26	■□□□□ 0.03
DDR1-238	ENST00000446312	ABCC4	O15439	1325 aa		15.26	■□□□□ 0.03
DDR1-238	ENST00000446312	ERC2	O15083	957 aa		15.26	■□□□□ 0.03
DDR1-238	ENST00000446312	ANKRD44	Q8N8A2	993 aa		15.26	■□□□□ 0.03
DDR1-238	ENST00000446312	RTF1	Q92541	710 aa	Known RBP	15.26	■□□□□ 0.03
DDR1-238	ENST00000446312	YTHDC2	Q9H6S0	1430 aa	Known RBP	15.26	■□□□□ 0.03
DDR1-238	ENST00000446312	RPGRIP1L	Q68CZ1	1315 aa		15.26	■□□□□ 0.03
DDR1-238	ENST00000446312	USP25	Q9UHP3	1055 aa		15.25	■□□□□ 0.03
DDR1-238	ENST00000446312	VIRMA	Q69YN4	1812 aa	Known RBP	15.25	■□□□□ 0.03
DDR1-238	ENST00000446312	PDE1A	P54750	535 aa		15.25	■□□□□ 0.03
DDR1-238	ENST00000446312	TCEANC2	Q96MN5	208 aa		15.25	■□□□□ 0.03
DDR1-238	ENST00000446312	TTC12	Q9H892	705 aa	Predicted RBP	15.25	■□□□□ 0.03
DDR1-238	ENST00000446312	SPG7	Q9UQ90	795 aa		15.25	■□□□□ 0.03
DDR1-238	ENST00000446312	YEATS2	Q9ULM3	1422 aa		15.25	■□□□□ 0.03
DDR1-238	ENST00000446312	SPC24	Q8NBT2	197 aa		15.24	■□□□□ 0.03
DDR1-238	ENST00000446312	DIP2C	Q9Y2E4	1556 aa		15.24	■□□□□ 0.03
DDR1-238	ENST00000446312	LRRFIP2	Q9Y608	721 aa	Known RBP	15.24	■□□□□ 0.03
DDR1-238	ENST00000446312	FOSB	P53539	338 aa		15.24	■□□□□ 0.03
DDR1-238	ENST00000446312	DHX37	Q8IY37	1157 aa	Known RBP	15.24	■□□□□ 0.03
DDR1-238	ENST00000446312	LRRC7	Q96NW7	1537 aa		15.23	■□□□□ 0.03
DDR1-238	ENST00000446312	REC8	O95072	547 aa		15.23	■□□□□ 0.03
DDR1-238	ENST00000446312	NSD2	O96028	1365 aa		15.22	■□□□□ 0.03
DDR1-238	ENST00000446312	PIK3C2B	O00750	1634 aa		15.22	■□□□□ 0.03
DDR1-238	ENST00000446312	GLI2	P10070	1586 aa		15.22	■□□□□ 0.03
DDR1-238	ENST00000446312	NEXMIF	Q5QGS0	1516 aa		15.22	■□□□□ 0.03
DDR1-238	ENST00000446312	OS9	Q13438	667 aa	Predicted RBP	15.22	■□□□□ 0.03
DDR1-238	ENST00000446312	FERMT3	Q86UX7	667 aa		15.22	■□□□□ 0.03
DDR1-238	ENST00000446312	WASL	O00401	505 aa	Predicted RBP	15.22	■□□□□ 0.03
DDR1-238	ENST00000446312	FAM173B	Q6P4H8	233 aa		15.22	■□□□□ 0.03
DDR1-238	ENST00000446312	ESF1	Q9H501	851 aa	Known RBP	15.22	■□□□□ 0.03
DDR1-238	ENST00000446312	CNPY2	Q9Y2B0	182 aa		15.22	■□□□□ 0.03
DDR1-238	ENST00000446312	NCOA3	Q9Y6Q9	1424 aa		15.21	■□□□□ 0.03
DDR1-238	ENST00000446312	AMPH	P49418	695 aa		15.21	■□□□□ 0.03
DDR1-238	ENST00000446312	MTHFSD	Q2M296	383 aa	Known RBP	15.21	■□□□□ 0.03
DDR1-238	ENST00000446312	CWC27	Q6UX04	472 aa	Known RBP	15.21	■□□□□ 0.03

Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms