RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-206ENST00000441089 PLEKHH2Q8IVE3 1493 aa7.69□□□□□ -1.18
PTPN4-206ENST00000441089 SCAF11Q99590 1463 aaKnown RBP7.69□□□□□ -1.18
PTPN4-206ENST00000441089 TTC24A2A3L6 582 aaPredicted RBP7.69□□□□□ -1.18
PTPN4-206ENST00000441089 NUTM2BA6NNL0 878 aaPredicted RBP7.69□□□□□ -1.18
PTPN4-206ENST00000441089 DDX11L8A8MPP1 907 aa7.69□□□□□ -1.18
PTPN4-206ENST00000441089 NUTM2EB1AL46 878 aaPredicted RBP7.69□□□□□ -1.18
PTPN4-206ENST00000441089 TERTO14746 1132 aaKnown RBP7.69□□□□□ -1.18
PTPN4-206ENST00000441089 LORP23490 312 aaPredicted RBP7.69□□□□□ -1.18
PTPN4-206ENST00000441089 RBM26Q5T8P6 1007 aaKnown RBP7.69□□□□□ -1.18
PTPN4-206ENST00000441089 NUTM2DQ5VT03 806 aaPredicted RBP7.69□□□□□ -1.18
PTPN4-206ENST00000441089 NUTM2AQ8IVF1 878 aaPredicted RBP7.69□□□□□ -1.18
PTPN4-206ENST00000441089 HPS1Q92902 700 aa7.69□□□□□ -1.18
PTPN4-206ENST00000441089 MRGPRX2Q96LB1 330 aa7.69□□□□□ -1.18
PTPN4-206ENST00000441089 LRP5O75197 1615 aa7.68□□□□□ -1.18
PTPN4-206ENST00000441089 WNT7AO00755 349 aa7.68□□□□□ -1.18
PTPN4-206ENST00000441089 FMNL1O95466 1100 aaPredicted RBP7.68□□□□□ -1.18
PTPN4-206ENST00000441089 ATP6V1AP38606 617 aa7.68□□□□□ -1.18
PTPN4-206ENST00000441089 RBM6P78332 1123 aaKnown RBP7.68□□□□□ -1.18
PTPN4-206ENST00000441089 TRIM47Q96LD4 638 aa7.68□□□□□ -1.18
PTPN4-206ENST00000441089 RGS12O14924 1447 aa7.68□□□□□ -1.18
PTPN4-206ENST00000441089 KIAA1107Q9UPP5 1409 aa7.68□□□□□ -1.18
PTPN4-206ENST00000441089 CFAP65Q6ZU64 1925 aaKnown RBP7.68□□□□□ -1.18
PTPN4-206ENST00000441089 LOC105371045A0A1W2PR82 267 aa7.67□□□□□ -1.18
PTPN4-206ENST00000441089 GCGRP47871 477 aa7.67□□□□□ -1.18
PTPN4-206ENST00000441089 CCDC125Q86Z20 511 aa7.67□□□□□ -1.18
PTPN4-206ENST00000441089 SLAIN2Q9P270 581 aa7.67□□□□□ -1.18
PTPN4-206ENST00000441089 DAXXQ9UER7 740 aaPredicted RBP7.67□□□□□ -1.18
PTPN4-206ENST00000441089 ZNF777Q9ULD5 760 aaPredicted RBP7.67□□□□□ -1.18
PTPN4-206ENST00000441089 WASHC2CQ9Y4E1 1318 aa7.67□□□□□ -1.18
PTPN4-206ENST00000441089 MSH6P52701 1360 aa7.67□□□□□ -1.18
PTPN4-206ENST00000441089 ABCC3O15438 1527 aa7.67□□□□□ -1.18
PTPN4-206ENST00000441089 UBR1Q8IWV7 1749 aa7.66□□□□□ -1.18
PTPN4-206ENST00000441089 HNRNPMP52272 730 aaKnown RBP eCLIP7.66□□□□□ -1.18
PTPN4-206ENST00000441089 TRIM32Q13049 653 aa7.66□□□□□ -1.18
PTPN4-206ENST00000441089 MSS51Q4VC12 460 aa7.66□□□□□ -1.18
PTPN4-206ENST00000441089 PROSER2Q86WR7 435 aaPredicted RBP7.66□□□□□ -1.18
PTPN4-206ENST00000441089 SNIP1Q8TAD8 396 aaKnown RBP7.66□□□□□ -1.18
PTPN4-206ENST00000441089 NGLY1Q96IV0 654 aa7.66□□□□□ -1.18
PTPN4-206ENST00000441089 MAP3K1Q13233 1512 aa7.66□□□□□ -1.18
PTPN4-206ENST00000441089 LRRIQ1Q96JM4 1722 aa7.66□□□□□ -1.18
PTPN4-206ENST00000441089 AFF2P51816 1311 aa7.65□□□□□ -1.18
PTPN4-206ENST00000441089 INSM1Q01101 510 aaPredicted RBP7.65□□□□□ -1.18
PTPN4-206ENST00000441089 TIAM1Q13009 1591 aa7.65□□□□□ -1.18
PTPN4-206ENST00000441089 HIC1Q14526 733 aa7.65□□□□□ -1.18
PTPN4-206ENST00000441089 EID1Q9Y6B2 187 aa7.65□□□□□ -1.18
PTPN4-206ENST00000441089 SLIT1O75093 1534 aa7.64□□□□□ -1.19
PTPN4-206ENST00000441089 PRDM15P57071 1507 aaPredicted RBP7.64□□□□□ -1.19
PTPN4-206ENST00000441089 NKTRP30414 1462 aaKnown RBP7.64□□□□□ -1.19
PTPN4-206ENST00000441089 DHX29Q7Z478 1369 aaKnown RBP7.64□□□□□ -1.19
PTPN4-206ENST00000441089 KIF3BO15066 747 aa7.64□□□□□ -1.19
PTPN4-206ENST00000441089 KCNA6P17658 529 aa7.64□□□□□ -1.19
PTPN4-206ENST00000441089 SKOR1P84550 965 aa7.64□□□□□ -1.19
PTPN4-206ENST00000441089 TXNDC2Q86VQ3 553 aa7.64□□□□□ -1.19
PTPN4-206ENST00000441089 SALL2Q9Y467 1007 aaPredicted RBP7.64□□□□□ -1.19
PTPN4-206ENST00000441089 AHDC1Q5TGY3 1603 aaPredicted RBP7.63□□□□□ -1.19
PTPN4-206ENST00000441089 ARHGAP23Q9P227 1491 aa7.63□□□□□ -1.19
PTPN4-206ENST00000441089 RTEL1-TNFRSF6BF6WH68 1400 aa7.63□□□□□ -1.19
PTPN4-206ENST00000441089 LOC100996750A0A140TA64 210 aa7.63□□□□□ -1.19
PTPN4-206ENST00000441089 HLA-CQ95604 372 aa7.63□□□□□ -1.19
PTPN4-206ENST00000441089 KRTAP4-6Q9BYQ5 205 aa7.63□□□□□ -1.19
PTPN4-206ENST00000441089 QTRT2Q9H974 415 aaKnown RBP7.63□□□□□ -1.19
PTPN4-206ENST00000441089 CCDC18Q5T9S5 1454 aa7.62□□□□□ -1.19
PTPN4-206ENST00000441089 LTKP29376 864 aa7.62□□□□□ -1.19
PTPN4-206ENST00000441089 MMP16P51512 607 aa7.62□□□□□ -1.19
PTPN4-206ENST00000441089 KDM5AP29375 1690 aaKnown RBP7.62□□□□□ -1.19
PTPN4-206ENST00000441089 NWD1Q149M9 1564 aa7.62□□□□□ -1.19
PTPN4-206ENST00000441089 GNPATO15228 680 aa7.61□□□□□ -1.19
PTPN4-206ENST00000441089 ZBTB24O43167 697 aaPredicted RBP7.61□□□□□ -1.19
PTPN4-206ENST00000441089 HAP1P54257 671 aaPredicted RBP7.61□□□□□ -1.19
PTPN4-206ENST00000441089 RSPH4AQ5TD94 716 aa7.61□□□□□ -1.19
PTPN4-206ENST00000441089 GPATCH8Q9UKJ3 1502 aaKnown RBP7.61□□□□□ -1.19
PTPN4-206ENST00000441089 GMPRP36959 345 aa7.6□□□□□ -1.19
PTPN4-206ENST00000441089 VEGFBP49765 207 aa7.6□□□□□ -1.19
PTPN4-206ENST00000441089 CFDP1Q9UEE9 299 aaPredicted RBP7.6□□□□□ -1.19
PTPN4-206ENST00000441089 ERVK-7P63135 1459 aa7.6□□□□□ -1.19
PTPN4-206ENST00000441089 NCOA2Q15596 1464 aa7.6□□□□□ -1.19
PTPN4-206ENST00000441089 NHSL1Q5SYE7 1610 aa7.6□□□□□ -1.19
PTPN4-206ENST00000441089 BMP1P13497 986 aa7.59□□□□□ -1.19
PTPN4-206ENST00000441089 YY1P25490 414 aa7.59□□□□□ -1.19
PTPN4-206ENST00000441089 CEP350Q5VT06 3117 aa7.59□□□□□ -1.19
PTPN4-206ENST00000441089 DIP2AQ14689 1571 aa7.59□□□□□ -1.2
PTPN4-206ENST00000441089 TESPA1A2RU30 521 aaPredicted RBP7.58□□□□□ -1.2
PTPN4-206ENST00000441089 DXOO77932 396 aaKnown RBP7.58□□□□□ -1.2
PTPN4-206ENST00000441089 RC3H1Q5TC82 1133 aaKnown RBP7.58□□□□□ -1.2
PTPN4-206ENST00000441089 TRIM46Q7Z4K8 759 aa7.58□□□□□ -1.2
PTPN4-206ENST00000441089 C8orf37Q96NL8 207 aa7.58□□□□□ -1.2
PTPN4-206ENST00000441089 NCOA3Q9Y6Q9 1424 aa7.58□□□□□ -1.2
PTPN4-206ENST00000441089 CHD2O14647 1828 aaKnown RBP7.57□□□□□ -1.2
PTPN4-206ENST00000441089 SENP2Q9HC62 589 aa7.57□□□□□ -1.2
PTPN4-206ENST00000441089 TMEM2Q9UHN6 1383 aa7.57□□□□□ -1.2
PTPN4-206ENST00000441089 CAMSAP2Q08AD1 1489 aa7.56□□□□□ -1.2
PTPN4-206ENST00000441089 ARHGAP35Q9NRY4 1499 aa7.56□□□□□ -1.2
PTPN4-206ENST00000441089 ERBB4Q15303 1308 aa7.56□□□□□ -1.2
PTPN4-206ENST00000441089 TET3O43151 1660 aa7.56□□□□□ -1.2
PTPN4-206ENST00000441089 CCNB3Q8WWL7 1395 aa7.56□□□□□ -1.2
PTPN4-206ENST00000441089 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.55□□□□□ -1.2
PTPN4-206ENST00000441089 BLMP54132 1417 aaPredicted RBP7.55□□□□□ -1.2
PTPN4-206ENST00000441089 SETD5Q9C0A6 1442 aa7.55□□□□□ -1.2
PTPN4-206ENST00000441089 ATF3P18847 181 aa7.55□□□□□ -1.2
PTPN4-206ENST00000441089 C14orf37Q86TY3 774 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms