RNA–Protein interactions for RNA: ENST00000440514.1

CPSF4-205, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 3

Gene CPSF4, Length 578 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-205ENST00000440514 NHSQ6T4R5 1651 aa24.41■■□□□ 1.5
CPSF4-205ENST00000440514 DDX54Q8TDD1 881 aaKnown RBP24.41■■□□□ 1.5
CPSF4-205ENST00000440514 IL13P35225 146 aa24.4■■□□□ 1.5
CPSF4-205ENST00000440514 ZCRB1Q8TBF4 217 aaKnown RBP24.4■■□□□ 1.5
CPSF4-205ENST00000440514 DOT1LQ8TEK3 1739 aa24.4■■□□□ 1.5
CPSF4-205ENST00000440514 PARD3Q8TEW0 1356 aa24.4■■□□□ 1.5
CPSF4-205ENST00000440514 PPP2R1AP30153 589 aa24.38■■□□□ 1.49
CPSF4-205ENST00000440514 BAG6P46379 1132 aa24.37■■□□□ 1.49
CPSF4-205ENST00000440514 PTF1AQ7RTS3 328 aa24.37■■□□□ 1.49
CPSF4-205ENST00000440514 AEBP1Q8IUX7 1158 aa24.37■■□□□ 1.49
CPSF4-205ENST00000440514 ACSBG1Q96GR2 724 aa24.35■■□□□ 1.49
CPSF4-205ENST00000440514 PCDH11XQ9BZA7 1347 aa24.35■■□□□ 1.49
CPSF4-205ENST00000440514 PCDH11YQ9BZA8 1340 aa24.35■■□□□ 1.49
CPSF4-205ENST00000440514 ZNF316A6NFI3 1004 aaPredicted RBP24.34■■□□□ 1.49
CPSF4-205ENST00000440514 DIAPH1O60610 1272 aaKnown RBP24.34■■□□□ 1.49
CPSF4-205ENST00000440514 APBA3O96018 575 aa24.34■■□□□ 1.49
CPSF4-205ENST00000440514 EN1Q05925 392 aaPredicted RBP24.33■■□□□ 1.49
CPSF4-205ENST00000440514 TOGARAM1Q9Y4F4 1720 aa24.32■■□□□ 1.48
CPSF4-205ENST00000440514 KDRP35968 1356 aa24.32■■□□□ 1.48
CPSF4-205ENST00000440514 RREB1Q92766 1687 aa24.32■■□□□ 1.48
CPSF4-205ENST00000440514 KCNQ2O43526 872 aa24.32■■□□□ 1.48
CPSF4-205ENST00000440514 SULT6B1Q6IMI4 303 aa24.32■■□□□ 1.48
CPSF4-205ENST00000440514 BTAF1O14981 1849 aa24.32■■□□□ 1.48
CPSF4-205ENST00000440514 RGPD3A6NKT7 1758 aaPredicted RBP24.31■■□□□ 1.48
CPSF4-205ENST00000440514 RGPD4Q7Z3J3 1758 aa24.31■■□□□ 1.48
CPSF4-205ENST00000440514 BCL11BQ9C0K0 894 aaPredicted RBP24.31■■□□□ 1.48
CPSF4-205ENST00000440514 CYP27B1O15528 508 aa24.3■■□□□ 1.48
CPSF4-205ENST00000440514 CFAP53Q96M91 514 aa24.3■■□□□ 1.48
CPSF4-205ENST00000440514 SPG7Q9UQ90 795 aa24.3■■□□□ 1.48
CPSF4-205ENST00000440514 PLEKHG2Q9H7P9 1386 aa24.29■■□□□ 1.48
CPSF4-205ENST00000440514 HMOX1P09601 288 aa24.29■■□□□ 1.48
CPSF4-205ENST00000440514 NUP188Q5SRE5 1749 aa24.28■■□□□ 1.48
CPSF4-205ENST00000440514 EZH2Q15910 746 aaKnown RBP24.28■■□□□ 1.48
CPSF4-205ENST00000440514 CAMKK2Q96RR4 588 aa24.27■■□□□ 1.48
CPSF4-205ENST00000440514 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.27■■□□□ 1.48
CPSF4-205ENST00000440514 U2SURPO15042 1029 aaKnown RBP24.26■■□□□ 1.47
CPSF4-205ENST00000440514 KAT6BQ8WYB5 2073 aa24.26■■□□□ 1.47
CPSF4-205ENST00000440514 RALBP1Q15311 655 aa24.25■■□□□ 1.47
CPSF4-205ENST00000440514 SYTL4Q96C24 671 aaPredicted RBP24.24■■□□□ 1.47
CPSF4-205ENST00000440514 PHKG2P15735 406 aa24.23■■□□□ 1.47
CPSF4-205ENST00000440514 PRIM1P49642 420 aaKnown RBP24.23■■□□□ 1.47
CPSF4-205ENST00000440514 ITGB4P16144 1822 aa24.23■■□□□ 1.47
CPSF4-205ENST00000440514 PLEKHO1Q53GL0 409 aaPredicted RBP24.22■■□□□ 1.47
CPSF4-205ENST00000440514 ZNF530Q6P9A1 599 aaPredicted RBP24.21■■□□□ 1.47
CPSF4-205ENST00000440514 IFNL2Q8IZJ0 200 aa24.21■■□□□ 1.47
CPSF4-205ENST00000440514 MYBBP1AQ9BQG0 1328 aaKnown RBP24.19■■□□□ 1.46
CPSF4-205ENST00000440514 PLSCR1O15162 318 aa24.19■■□□□ 1.46
CPSF4-205ENST00000440514 NKX1-1Q15270 411 aaPredicted RBP24.19■■□□□ 1.46
CPSF4-205ENST00000440514 AMOTQ4VCS5 1084 aa24.19■■□□□ 1.46
CPSF4-205ENST00000440514 NUDCQ9Y266 331 aa24.18■■□□□ 1.46
CPSF4-205ENST00000440514 KDM6AO15550 1401 aaPredicted RBP24.18■■□□□ 1.46
CPSF4-205ENST00000440514 PRKRIP1Q9H875 184 aaPredicted RBP24.17■■□□□ 1.46
CPSF4-205ENST00000440514 U2AF1L5P0DN76 240 aaPredicted RBP24.15■■□□□ 1.46
CPSF4-205ENST00000440514 U2AF1Q01081 240 aaKnown RBP eCLIP24.15■■□□□ 1.46
CPSF4-205ENST00000440514 C1orf141Q5JVX7 400 aa24.15■■□□□ 1.46
CPSF4-205ENST00000440514 LY75O60449 1722 aa24.15■■□□□ 1.46
CPSF4-205ENST00000440514 TXNRD1Q16881 649 aa24.14■■□□□ 1.45
CPSF4-205ENST00000440514 MPRIPQ6WCQ1 1025 aa24.14■■□□□ 1.45
CPSF4-205ENST00000440514 PROM2Q8N271 834 aa24.14■■□□□ 1.45
CPSF4-205ENST00000440514 RSPH6AQ9H0K4 717 aa24.14■■□□□ 1.45
CPSF4-205ENST00000440514 PRKAR2BP31323 418 aa24.13■■□□□ 1.45
CPSF4-205ENST00000440514 SCN11AQ9UI33 1791 aa24.13■■□□□ 1.45
CPSF4-205ENST00000440514 VIRMAQ69YN4 1812 aaKnown RBP24.12■■□□□ 1.45
CPSF4-205ENST00000440514 MTHFSDQ2M296 383 aaKnown RBP24.12■■□□□ 1.45
CPSF4-205ENST00000440514 PAPPAQ13219 1627 aa24.12■■□□□ 1.45
CPSF4-205ENST00000440514 HSP90AB1P08238 724 aaKnown RBP24.11■■□□□ 1.45
CPSF4-205ENST00000440514 DCAF5Q96JK2 942 aa24.11■■□□□ 1.45
CPSF4-205ENST00000440514 ADAMTS7Q9UKP4 1686 aa24.09■■□□□ 1.45
CPSF4-205ENST00000440514 PSDA5PKW4 1024 aaPredicted RBP24.09■■□□□ 1.45
CPSF4-205ENST00000440514 AKAP4Q5JQC9 854 aa24.09■■□□□ 1.45
CPSF4-205ENST00000440514 PIGBQ92521 554 aa24.09■■□□□ 1.45
CPSF4-205ENST00000440514 TMOD3Q9NYL9 352 aa24.09■■□□□ 1.45
CPSF4-205ENST00000440514 PHACTR3Q96KR7 559 aa24.08■■□□□ 1.45
CPSF4-205ENST00000440514 ANO8Q9HCE9 1232 aaPredicted RBP24.08■■□□□ 1.45
CPSF4-205ENST00000440514 PALLDQ8WX93 1383 aa24.07■■□□□ 1.44
CPSF4-205ENST00000440514 R3HDM1Q15032 1099 aaKnown RBP24.07■■□□□ 1.44
CPSF4-205ENST00000440514 MRC1P22897 1456 aa24.07■■□□□ 1.44
CPSF4-205ENST00000440514 FCHSD2O94868 740 aa24.06■■□□□ 1.44
CPSF4-205ENST00000440514 LRRC4BQ9NT99 713 aa24.06■■□□□ 1.44
CPSF4-205ENST00000440514 MAP3K5Q99683 1374 aa24.05■■□□□ 1.44
CPSF4-205ENST00000440514 ERVV-2B6SEH9 535 aa24.05■■□□□ 1.44
CPSF4-205ENST00000440514 KCNQ4P56696 695 aa24.05■■□□□ 1.44
CPSF4-205ENST00000440514 GAS2L2Q8NHY3 880 aa24.05■■□□□ 1.44
CPSF4-205ENST00000440514 C5P01031 1676 aa24.03■■□□□ 1.44
CPSF4-205ENST00000440514 CABP4P57796 275 aa24.03■■□□□ 1.44
CPSF4-205ENST00000440514 NBPF14Q5TI25 921 aa24.03■■□□□ 1.44
CPSF4-205ENST00000440514 LGR6Q9HBX8 967 aa24.03■■□□□ 1.44
CPSF4-205ENST00000440514 RNMTO43148 476 aaKnown RBP24.02■■□□□ 1.44
CPSF4-205ENST00000440514 SLC27A3Q5K4L6 730 aa24.02■■□□□ 1.44
CPSF4-205ENST00000440514 CCNL1Q9UK58 526 aaPredicted RBP24.02■■□□□ 1.44
CPSF4-205ENST00000440514 ASAP1Q9ULH1 1129 aa24.02■■□□□ 1.44
CPSF4-205ENST00000440514 TAF1LQ8IZX4 1826 aa24■■□□□ 1.43
CPSF4-205ENST00000440514 SMARCC1Q92922 1105 aaPredicted RBP24■■□□□ 1.43
CPSF4-205ENST00000440514 ATG3Q9NT62 314 aa24■■□□□ 1.43
CPSF4-205ENST00000440514 GNAT3A8MTJ3 354 aa23.99■■□□□ 1.43
CPSF4-205ENST00000440514 TUBGCP6Q96RT7 1819 aa23.98■■□□□ 1.43
CPSF4-205ENST00000440514 ANP32CO43423 234 aa23.98■■□□□ 1.43
CPSF4-205ENST00000440514 ZNF827Q17R98 1081 aa23.98■■□□□ 1.43
CPSF4-205ENST00000440514 NFATC2IPQ8NCF5 419 aa23.98■■□□□ 1.43
CPSF4-205ENST00000440514 PLEKHF1Q96S99 279 aa23.98■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 94.2 ms