RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 FRAT2O75474 233 aaPredicted RBP17.91■□□□□ 0.46
LIMD1-202ENST00000440097 FAM161AQ3B820 660 aa17.91■□□□□ 0.46
LIMD1-202ENST00000440097 TMEM57Q8N5G2 664 aa17.91■□□□□ 0.46
LIMD1-202ENST00000440097 MTHFSDQ2M296 383 aaKnown RBP17.91■□□□□ 0.46
LIMD1-202ENST00000440097 C8orf34Q49A92 452 aa17.91■□□□□ 0.46
LIMD1-202ENST00000440097 RWDD1Q9H446 243 aaPredicted RBP17.9■□□□□ 0.46
LIMD1-202ENST00000440097 IGSF1Q8N6C5 1336 aa17.89■□□□□ 0.45
LIMD1-202ENST00000440097 USHBP1Q8N6Y0 703 aa17.89■□□□□ 0.45
LIMD1-202ENST00000440097 MIS18AQ9NYP9 233 aa17.88■□□□□ 0.45
LIMD1-202ENST00000440097 KRT24Q2M2I5 525 aa17.88■□□□□ 0.45
LIMD1-202ENST00000440097 GAS2L2Q8NHY3 880 aa17.88■□□□□ 0.45
LIMD1-202ENST00000440097 MRPL50Q8N5N7 158 aaKnown RBP17.86■□□□□ 0.45
LIMD1-202ENST00000440097 C19orf44Q9H6X5 657 aa17.86■□□□□ 0.45
LIMD1-202ENST00000440097 ATF3P18847 181 aa17.86■□□□□ 0.45
LIMD1-202ENST00000440097 KCNH5Q8NCM2 988 aa17.86■□□□□ 0.45
LIMD1-202ENST00000440097 TSPYL4Q9UJ04 414 aa17.85■□□□□ 0.45
LIMD1-202ENST00000440097 KDRP35968 1356 aa17.85■□□□□ 0.45
LIMD1-202ENST00000440097 RGPD1P0DJD0 1748 aa17.85■□□□□ 0.45
LIMD1-202ENST00000440097 KIF24Q5T7B8 1368 aa17.84■□□□□ 0.45
LIMD1-202ENST00000440097 CHL1O00533 1208 aa17.84■□□□□ 0.45
LIMD1-202ENST00000440097 KRT28Q7Z3Y7 464 aa17.84■□□□□ 0.45
LIMD1-202ENST00000440097 HAP1P54257 671 aaPredicted RBP17.83■□□□□ 0.45
LIMD1-202ENST00000440097 DDX17Q92841 729 aaKnown RBP17.83■□□□□ 0.45
LIMD1-202ENST00000440097 FAM43AQ8N2R8 423 aa17.83■□□□□ 0.44
LIMD1-202ENST00000440097 IP6K1Q92551 441 aa17.83■□□□□ 0.44
LIMD1-202ENST00000440097 GCP02774 474 aa17.82■□□□□ 0.44
LIMD1-202ENST00000440097 GNAT3A8MTJ3 354 aa17.82■□□□□ 0.44
LIMD1-202ENST00000440097 PDZRN3Q9UPQ7 1066 aa17.82■□□□□ 0.44
LIMD1-202ENST00000440097 BRPF1P55201 1214 aaPredicted RBP17.81■□□□□ 0.44
LIMD1-202ENST00000440097 TMEM94Q12767 1356 aa17.81■□□□□ 0.44
LIMD1-202ENST00000440097 ZBTB40Q9NUA8 1239 aa17.81■□□□□ 0.44
LIMD1-202ENST00000440097 ARHGAP45Q92619 1136 aa17.8■□□□□ 0.44
LIMD1-202ENST00000440097 RTL1A6NKG5 1358 aa17.8■□□□□ 0.44
LIMD1-202ENST00000440097 MARF1Q9Y4F3 1742 aaKnown RBP17.8■□□□□ 0.44
LIMD1-202ENST00000440097 API5Q9BZZ5 524 aaKnown RBP17.79■□□□□ 0.44
LIMD1-202ENST00000440097 NBPF6Q5VWK0 638 aa17.79■□□□□ 0.44
LIMD1-202ENST00000440097 LRRC59Q96AG4 307 aaKnown RBP17.79■□□□□ 0.44
LIMD1-202ENST00000440097 NBPF4Q96M43 638 aa17.79■□□□□ 0.44
LIMD1-202ENST00000440097 C1orf115Q9H7X2 142 aa17.79■□□□□ 0.44
LIMD1-202ENST00000440097 NWD1Q149M9 1564 aa17.78■□□□□ 0.44
LIMD1-202ENST00000440097 LTN1O94822 1766 aa17.78■□□□□ 0.44
LIMD1-202ENST00000440097 CHMP4BQ9H444 224 aaKnown RBP17.78■□□□□ 0.44
LIMD1-202ENST00000440097 C1orf167Q5SNV9 1468 aa17.78■□□□□ 0.44
LIMD1-202ENST00000440097 CRB1P82279 1406 aa17.78■□□□□ 0.44
LIMD1-202ENST00000440097 SLC4A2P04920 1241 aa17.76■□□□□ 0.43
LIMD1-202ENST00000440097 ZC3H6P61129 1189 aaKnown RBP17.76■□□□□ 0.43
LIMD1-202ENST00000440097 HDAC1Q13547 482 aaPredicted RBP17.76■□□□□ 0.43
LIMD1-202ENST00000440097 MAP3K5Q99683 1374 aa17.76■□□□□ 0.43
LIMD1-202ENST00000440097 KIAA0232Q92628 1395 aa17.75■□□□□ 0.43
LIMD1-202ENST00000440097 ZBTB7BO15156 539 aaPredicted RBP17.75■□□□□ 0.43
LIMD1-202ENST00000440097 HTATSF1O43719 755 aaKnown RBP17.75■□□□□ 0.43
LIMD1-202ENST00000440097 SEC24BO95487 1268 aa17.75■□□□□ 0.43
LIMD1-202ENST00000440097 NECTIN2Q92692 538 aa17.75■□□□□ 0.43
LIMD1-202ENST00000440097 NFAT5O94916 1531 aa17.75■□□□□ 0.43
LIMD1-202ENST00000440097 ARHGEF25Q86VW2 580 aa17.74■□□□□ 0.43
LIMD1-202ENST00000440097 ABCC4O15439 1325 aa17.74■□□□□ 0.43
LIMD1-202ENST00000440097 IL17REQ8NFR9 667 aa17.74■□□□□ 0.43
LIMD1-202ENST00000440097 USP54Q70EL1 1684 aa17.74■□□□□ 0.43
LIMD1-202ENST00000440097 CADPS2Q86UW7 1296 aa17.74■□□□□ 0.43
LIMD1-202ENST00000440097 ZNF335Q9H4Z2 1342 aaPredicted RBP17.73■□□□□ 0.43
LIMD1-202ENST00000440097 ANKRD24Q8TF21 1146 aa17.73■□□□□ 0.43
LIMD1-202ENST00000440097 STK31Q9BXU1 1019 aa17.73■□□□□ 0.43
LIMD1-202ENST00000440097 SLC4A10Q6U841 1118 aa17.72■□□□□ 0.43
LIMD1-202ENST00000440097 TAF7Q15545 349 aaPredicted RBP17.71■□□□□ 0.43
LIMD1-202ENST00000440097 USP19O94966 1318 aa17.71■□□□□ 0.43
LIMD1-202ENST00000440097 ZNF530Q6P9A1 599 aaPredicted RBP17.71■□□□□ 0.43
LIMD1-202ENST00000440097 MSH6P52701 1360 aa17.71■□□□□ 0.43
LIMD1-202ENST00000440097 AXIN2Q9Y2T1 843 aa17.7■□□□□ 0.42
LIMD1-202ENST00000440097 VIRMAQ69YN4 1812 aaKnown RBP17.7■□□□□ 0.42
LIMD1-202ENST00000440097 CABLES1Q8TDN4 633 aa17.69■□□□□ 0.42
LIMD1-202ENST00000440097 LNPKQ9C0E8 428 aa17.69■□□□□ 0.42
LIMD1-202ENST00000440097 MST1RQ04912 1400 aa17.69■□□□□ 0.42
LIMD1-202ENST00000440097 PTPRCP08575 1304 aa17.69■□□□□ 0.42
LIMD1-202ENST00000440097 PLEKHO1Q53GL0 409 aaPredicted RBP17.69■□□□□ 0.42
LIMD1-202ENST00000440097 SMC5Q8IY18 1101 aa17.69■□□□□ 0.42
LIMD1-202ENST00000440097 NPHP3Q7Z494 1330 aa17.68■□□□□ 0.42
LIMD1-202ENST00000440097 TEFQ10587 303 aa17.68■□□□□ 0.42
LIMD1-202ENST00000440097 C1orf141Q5JVX7 400 aa17.68■□□□□ 0.42
LIMD1-202ENST00000440097 MPRIPQ6WCQ1 1025 aa17.68■□□□□ 0.42
LIMD1-202ENST00000440097 LGR6Q9HBX8 967 aa17.68■□□□□ 0.42
LIMD1-202ENST00000440097 ANKRD45Q5TZF3 282 aa17.68■□□□□ 0.42
LIMD1-202ENST00000440097 CCDC30Q5VVM6 783 aa17.68■□□□□ 0.42
LIMD1-202ENST00000440097 G2E3Q7L622 706 aa17.68■□□□□ 0.42
LIMD1-202ENST00000440097 RRAGDQ9NQL2 400 aaPredicted RBP17.68■□□□□ 0.42
LIMD1-202ENST00000440097 KIF1AQ12756 1690 aa17.67■□□□□ 0.42
LIMD1-202ENST00000440097 F6X3S4 739 aa17.67■□□□□ 0.42
LIMD1-202ENST00000440097 CSB-PGBD3P0DP91 1061 aa17.67■□□□□ 0.42
LIMD1-202ENST00000440097 SLKQ9H2G2 1235 aaPredicted RBP17.67■□□□□ 0.42
LIMD1-202ENST00000440097 NLRP2Q9NX02 1062 aa17.67■□□□□ 0.42
LIMD1-202ENST00000440097 FKBP5Q13451 457 aaPredicted RBP17.66■□□□□ 0.42
LIMD1-202ENST00000440097 INTS3Q68E01 1043 aaKnown RBP17.66■□□□□ 0.42
LIMD1-202ENST00000440097 STRCP1A6NGW2 1772 aa17.66■□□□□ 0.42
LIMD1-202ENST00000440097 EIF2S2P20042 333 aaKnown RBP17.65■□□□□ 0.42
LIMD1-202ENST00000440097 AMOTQ4VCS5 1084 aa17.65■□□□□ 0.42
LIMD1-202ENST00000440097 UPF2Q9HAU5 1272 aaKnown RBP17.65■□□□□ 0.42
LIMD1-202ENST00000440097 SLIT3O75094 1523 aa17.65■□□□□ 0.42
LIMD1-202ENST00000440097 RGPD2P0DJD1 1756 aa17.65■□□□□ 0.42
LIMD1-202ENST00000440097 BECN1Q14457 450 aa17.64■□□□□ 0.41
LIMD1-202ENST00000440097 AKAP4Q5JQC9 854 aa17.64■□□□□ 0.41
LIMD1-202ENST00000440097 CHD1LQ86WJ1 897 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms