RNA–Protein interactions for RNA: ENST00000439128.6

NEK1-201, Transcript of NIMA related kinase 1, humanhuman

TSL 1 (best) BASIC

Gene NEK1, Length 5,653 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1-201ENST00000439128 NBPF6Q5VWK0 638 aa14.49□□□□□ -0.09
NEK1-201ENST00000439128 LARP1Q6PKG0 1096 aaKnown RBP14.49□□□□□ -0.09
NEK1-201ENST00000439128 NBPF5PQ86XG9 351 aaPredicted RBP14.49□□□□□ -0.09
NEK1-201ENST00000439128 NBPF4Q96M43 638 aa14.49□□□□□ -0.09
NEK1-201ENST00000439128 TEX13AQ9BXU3 409 aaPredicted RBP14.49□□□□□ -0.09
NEK1-201ENST00000439128 ODF2Q5BJF6 829 aa14.49□□□□□ -0.09
NEK1-201ENST00000439128 NAIPQ13075 1403 aa14.49□□□□□ -0.09
NEK1-201ENST00000439128 DUSP27Q5VZP5 1158 aa14.48□□□□□ -0.09
NEK1-201ENST00000439128 ZCRB1Q8TBF4 217 aaKnown RBP14.48□□□□□ -0.09
NEK1-201ENST00000439128 LRRCC1Q9C099 1032 aa14.48□□□□□ -0.09
NEK1-201ENST00000439128 C19orf44Q9H6X5 657 aa14.48□□□□□ -0.09
NEK1-201ENST00000439128 ZNF76P36508 570 aa14.48□□□□□ -0.09
NEK1-201ENST00000439128 FBXO3Q9UK99 471 aa14.48□□□□□ -0.09
NEK1-201ENST00000439128 IFIT5Q13325 482 aaKnown RBP14.48□□□□□ -0.09
NEK1-201ENST00000439128 THUMPD2Q9BTF0 503 aaKnown RBP14.48□□□□□ -0.09
NEK1-201ENST00000439128 WDR7Q9Y4E6 1490 aa14.48□□□□□ -0.09
NEK1-201ENST00000439128 IPO7O95373 1038 aaKnown RBP14.48□□□□□ -0.09
NEK1-201ENST00000439128 AIDAQ96BJ3 306 aa14.47□□□□□ -0.09
NEK1-201ENST00000439128 PCF11O94913 1555 aaKnown RBP14.47□□□□□ -0.09
NEK1-201ENST00000439128 ZFYVE27Q5T4F4 411 aa14.47□□□□□ -0.09
NEK1-201ENST00000439128 UHRF1BP1Q6BDS2 1440 aa14.47□□□□□ -0.09
NEK1-201ENST00000439128 PPP1R42Q7Z4L9 355 aa14.46□□□□□ -0.09
NEK1-201ENST00000439128 PIBF1Q8WXW3 757 aa14.46□□□□□ -0.09
NEK1-201ENST00000439128 UBAC1Q9BSL1 405 aa14.46□□□□□ -0.09
NEK1-201ENST00000439128 ANKRD18BA2A2Z9 1011 aa14.46□□□□□ -0.09
NEK1-201ENST00000439128 BCAR3O75815 825 aa14.46□□□□□ -0.09
NEK1-201ENST00000439128 CDCA7LQ96GN5 454 aa14.46□□□□□ -0.09
NEK1-201ENST00000439128 AKAP2Q9Y2D5 859 aa14.46□□□□□ -0.09
NEK1-201ENST00000439128 PARP3Q9Y6F1 533 aa14.46□□□□□ -0.09
NEK1-201ENST00000439128 ABCC5O15440 1437 aa14.46□□□□□ -0.1
NEK1-201ENST00000439128 MYO1BO43795 1136 aa14.45□□□□□ -0.1
NEK1-201ENST00000439128 KDM5BQ9UGL1 1544 aa14.45□□□□□ -0.1
NEK1-201ENST00000439128 CCDC73Q6ZRK6 1079 aa14.45□□□□□ -0.1
NEK1-201ENST00000439128 ZHX3Q9H4I2 956 aa14.45□□□□□ -0.1
NEK1-201ENST00000439128 RTN4Q9NQC3 1192 aaKnown RBP14.45□□□□□ -0.1
NEK1-201ENST00000439128 DDX49Q9Y6V7 483 aaKnown RBP14.45□□□□□ -0.1
NEK1-201ENST00000439128 SLC5A1P13866 664 aa14.45□□□□□ -0.1
NEK1-201ENST00000439128 SMARCC1Q92922 1105 aaPredicted RBP14.45□□□□□ -0.1
NEK1-201ENST00000439128 STK32BQ9NY57 414 aa14.45□□□□□ -0.1
NEK1-201ENST00000439128 SETDB2Q96T68 719 aa14.44□□□□□ -0.1
NEK1-201ENST00000439128 SLF2Q8IX21 1173 aa14.44□□□□□ -0.1
NEK1-201ENST00000439128 TRIM22Q8IYM9 498 aa14.44□□□□□ -0.1
NEK1-201ENST00000439128 MKNK2Q9HBH9 465 aa14.44□□□□□ -0.1
NEK1-201ENST00000439128 TXLNAP40222 546 aa14.44□□□□□ -0.1
NEK1-201ENST00000439128 ZNF287Q9HBT7 754 aa14.44□□□□□ -0.1
NEK1-201ENST00000439128 RIMS2Q9UQ26 1411 aa14.44□□□□□ -0.1
NEK1-201ENST00000439128 SCLT1Q96NL6 688 aa14.44□□□□□ -0.1
NEK1-201ENST00000439128 TMPOP42166 694 aaKnown RBP14.43□□□□□ -0.1
NEK1-201ENST00000439128 WDR63Q8IWG1 891 aa14.43□□□□□ -0.1
NEK1-201ENST00000439128 CDC5LQ99459 802 aaKnown RBP14.43□□□□□ -0.1
NEK1-201ENST00000439128 IL1RAPL2Q9NP60 686 aa14.43□□□□□ -0.1
NEK1-201ENST00000439128 RBM19Q9Y4C8 960 aaKnown RBP14.43□□□□□ -0.1
NEK1-201ENST00000439128 MATR3P43243 847 aaKnown RBP eCLIP14.43□□□□□ -0.11e-6■■■■■ 28.3
NEK1-201ENST00000439128 GOLGA6L3A6NEY3 463 aa14.42□□□□□ -0.1
NEK1-201ENST00000439128 NAP1L1P55209 391 aaKnown RBP14.42□□□□□ -0.1
NEK1-201ENST00000439128 A2MP01023 1474 aa14.42□□□□□ -0.1
NEK1-201ENST00000439128 PLCH2O75038 1416 aa14.42□□□□□ -0.1
NEK1-201ENST00000439128 ZNF518AQ6AHZ1 1483 aa14.42□□□□□ -0.1
NEK1-201ENST00000439128 FEZ1Q99689 392 aa14.42□□□□□ -0.1
NEK1-201ENST00000439128 SPDYE4A6NLX3 237 aa14.42□□□□□ -0.1
NEK1-201ENST00000439128 DDX11L8A8MPP1 907 aa14.42□□□□□ -0.1
NEK1-201ENST00000439128 MINDY4BA8MYZ0 360 aa14.42□□□□□ -0.1
NEK1-201ENST00000439128 PDE4AP27815 886 aa14.42□□□□□ -0.1
NEK1-201ENST00000439128 BTG4Q9NY30 223 aa14.42□□□□□ -0.1
NEK1-201ENST00000439128 OFD1O75665 1012 aa14.41□□□□□ -0.1
NEK1-201ENST00000439128 AAMPQ13685 434 aa14.41□□□□□ -0.1
NEK1-201ENST00000439128 C14orf93Q9H972 538 aaKnown RBP14.41□□□□□ -0.1
NEK1-201ENST00000439128 CCAR2Q8N163 923 aaKnown RBP14.41□□□□□ -0.1
NEK1-201ENST00000439128 TMEM87AQ8NBN3 555 aa14.41□□□□□ -0.1
NEK1-201ENST00000439128 STK3Q13188 491 aa14.41□□□□□ -0.1
NEK1-201ENST00000439128 HYPKQ9NX55 129 aa14.41□□□□□ -0.1
NEK1-201ENST00000439128 IL2RBP14784 551 aa14.41□□□□□ -0.1
NEK1-201ENST00000439128 ZMYM3Q14202 1370 aa14.4□□□□□ -0.1
NEK1-201ENST00000439128 PTPN23Q9H3S7 1636 aa14.4□□□□□ -0.1
NEK1-201ENST00000439128 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.4□□□□□ -0.1
NEK1-201ENST00000439128 GCC1Q96CN9 775 aa14.4□□□□□ -0.1
NEK1-201ENST00000439128 RTCBQ9Y3I0 505 aaKnown RBP14.4□□□□□ -0.1
NEK1-201ENST00000439128 TTC21BQ7Z4L5 1316 aa14.4□□□□□ -0.1
NEK1-201ENST00000439128 CCDC96Q2M329 555 aa14.4□□□□□ -0.1
NEK1-201ENST00000439128 ATP5J2-PTCD1G3V325 749 aa14.39□□□□□ -0.11
NEK1-201ENST00000439128 HDAC9Q9UKV0 1011 aa14.39□□□□□ -0.11
NEK1-201ENST00000439128 CTNNA3Q9UI47 895 aa14.39□□□□□ -0.11
NEK1-201ENST00000439128 RBM26Q5T8P6 1007 aaKnown RBP14.39□□□□□ -0.11
NEK1-201ENST00000439128 SASS6Q6UVJ0 657 aa14.39□□□□□ -0.11
NEK1-201ENST00000439128 OLFM4Q6UX06 510 aa14.39□□□□□ -0.11
NEK1-201ENST00000439128 NCOA1Q15788 1441 aa14.39□□□□□ -0.11
NEK1-201ENST00000439128 JDP2Q8WYK2 163 aa14.38□□□□□ -0.11
NEK1-201ENST00000439128 DBF4Q9UBU7 674 aaPredicted RBP14.38□□□□□ -0.11
NEK1-201ENST00000439128 SNRPA1P09661 255 aaKnown RBP14.38□□□□□ -0.11
NEK1-201ENST00000439128 MAP3K12Q12852 859 aa14.38□□□□□ -0.11
NEK1-201ENST00000439128 ATF7IPQ6VMQ6 1270 aa14.38□□□□□ -0.11
NEK1-201ENST00000439128 ZNF444Q8N0Y2 327 aaPredicted RBP14.38□□□□□ -0.11
NEK1-201ENST00000439128 SSBP05455 408 aaKnown RBP eCLIP14.37□□□□□ -0.11
NEK1-201ENST00000439128 NUTM1Q86Y26 1132 aa14.37□□□□□ -0.11
NEK1-201ENST00000439128 GOLGA6L1Q8N7Z2 621 aa14.37□□□□□ -0.11
NEK1-201ENST00000439128 USP21Q9UK80 565 aa14.37□□□□□ -0.11
NEK1-201ENST00000439128 CWC25Q9NXE8 425 aaPredicted RBP14.37□□□□□ -0.11
NEK1-201ENST00000439128 LMOD1P29536 600 aaPredicted RBP14.37□□□□□ -0.11
NEK1-201ENST00000439128 NF2P35240 595 aa14.37□□□□□ -0.11
NEK1-201ENST00000439128 ATP10BO94823 1461 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms