RNA–Protein interactions for RNA: ENST00000425537.1

HMGB4-201, Transcript of high mobility group box 4, humanhuman

TSL 1 (best)

Gene HMGB4, Length 630 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-201ENST00000425537 BCAR3O75815 825 aa12.14□□□□□ -0.47
HMGB4-201ENST00000425537 EXOSC9Q06265 439 aaKnown RBP12.14□□□□□ -0.47
HMGB4-201ENST00000425537 CFAP44Q96MT7 982 aa12.14□□□□□ -0.47
HMGB4-201ENST00000425537 C8orf37Q96NL8 207 aa12.14□□□□□ -0.47
HMGB4-201ENST00000425537 GCP02774 474 aa12.13□□□□□ -0.47
HMGB4-201ENST00000425537 ZKSCAN2Q63HK3 967 aa12.13□□□□□ -0.47
HMGB4-201ENST00000425537 EYA1Q99502 592 aa12.13□□□□□ -0.47
HMGB4-201ENST00000425537 CHMP4BQ9H444 224 aaKnown RBP12.13□□□□□ -0.47
HMGB4-201ENST00000425537 SMC4Q9NTJ3 1288 aa12.13□□□□□ -0.47
HMGB4-201ENST00000425537 ZNF853P0CG23 659 aa12.12□□□□□ -0.47
HMGB4-201ENST00000425537 ZC3H6P61129 1189 aaKnown RBP12.12□□□□□ -0.47
HMGB4-201ENST00000425537 FRAT1Q92837 279 aaPredicted RBP12.12□□□□□ -0.47
HMGB4-201ENST00000425537 TSR2Q969E8 191 aaKnown RBP12.12□□□□□ -0.47
HMGB4-201ENST00000425537 LAS1LQ9Y4W2 734 aaKnown RBP12.12□□□□□ -0.47
HMGB4-201ENST00000425537 SPATA31A6Q5VVP1 1343 aa12.11□□□□□ -0.47
HMGB4-201ENST00000425537 ABCC6O95255 1503 aa12.11□□□□□ -0.47
HMGB4-201ENST00000425537 BRPF1P55201 1214 aaPredicted RBP12.11□□□□□ -0.47
HMGB4-201ENST00000425537 CHRNA2Q15822 529 aa12.11□□□□□ -0.47
HMGB4-201ENST00000425537 AEBP1Q8IUX7 1158 aa12.11□□□□□ -0.47
HMGB4-201ENST00000425537 PLCH1Q4KWH8 1693 aa12.1□□□□□ -0.47
HMGB4-201ENST00000425537 CENPQQ7L2Z9 268 aaPredicted RBP12.1□□□□□ -0.47
HMGB4-201ENST00000425537 ARHGEF25Q86VW2 580 aa12.1□□□□□ -0.47
HMGB4-201ENST00000425537 FTSJ3Q8IY81 847 aaKnown RBP12.1□□□□□ -0.47
HMGB4-201ENST00000425537 CHMP4AQ9BY43 222 aa12.1□□□□□ -0.47
HMGB4-201ENST00000425537 AFF2P51816 1311 aa12.1□□□□□ -0.47
HMGB4-201ENST00000425537 C20orf194Q5TEA3 1177 aa12.09□□□□□ -0.47
HMGB4-201ENST00000425537 DZIP1LQ8IYY4 767 aaKnown RBP12.09□□□□□ -0.47
HMGB4-201ENST00000425537 BABAM1Q9NWV8 329 aa12.09□□□□□ -0.47
HMGB4-201ENST00000425537 SOS1Q07889 1333 aaPredicted RBP12.09□□□□□ -0.47
HMGB4-201ENST00000425537 KIAA0232Q92628 1395 aa12.08□□□□□ -0.48
HMGB4-201ENST00000425537 PLEKHG2Q9H7P9 1386 aa12.08□□□□□ -0.48
HMGB4-201ENST00000425537 GNAT3A8MTJ3 354 aa12.08□□□□□ -0.48
HMGB4-201ENST00000425537 AMOTQ4VCS5 1084 aa12.08□□□□□ -0.48
HMGB4-201ENST00000425537 ARHGAP45Q92619 1136 aa12.08□□□□□ -0.48
HMGB4-201ENST00000425537 LTV1Q96GA3 475 aaPredicted RBP12.08□□□□□ -0.48
HMGB4-201ENST00000425537 NGLY1Q96IV0 654 aa12.08□□□□□ -0.48
HMGB4-201ENST00000425537 MBIPQ9NS73 344 aa12.08□□□□□ -0.48
HMGB4-201ENST00000425537 MAP3K5Q99683 1374 aa12.07□□□□□ -0.48
HMGB4-201ENST00000425537 CHL1O00533 1208 aa12.07□□□□□ -0.48
HMGB4-201ENST00000425537 MTHFSDQ2M296 383 aaKnown RBP12.07□□□□□ -0.48
HMGB4-201ENST00000425537 TWISTNBQ3B726 338 aaPredicted RBP12.07□□□□□ -0.48
HMGB4-201ENST00000425537 PLEKHO1Q53GL0 409 aaPredicted RBP12.07□□□□□ -0.48
HMGB4-201ENST00000425537 ATF7IPQ6VMQ6 1270 aa12.07□□□□□ -0.48
HMGB4-201ENST00000425537 SSH1Q8WYL5 1049 aa12.07□□□□□ -0.48
HMGB4-201ENST00000425537 TSHZ2Q9NRE2 1034 aa12.07□□□□□ -0.48
HMGB4-201ENST00000425537 RGS17Q9UGC6 210 aaPredicted RBP12.07□□□□□ -0.48
HMGB4-201ENST00000425537 FAM208AQ9UK61 1670 aaKnown RBP12.06□□□□□ -0.48
HMGB4-201ENST00000425537 TCERG1O14776 1098 aaKnown RBP12.06□□□□□ -0.48
HMGB4-201ENST00000425537 CLUAP1Q96AJ1 413 aa12.06□□□□□ -0.48
HMGB4-201ENST00000425537 PRDM11Q9NQV5 511 aa12.06□□□□□ -0.48
HMGB4-201ENST00000425537 DDX19BQ9UMR2 479 aa12.06□□□□□ -0.48
HMGB4-201ENST00000425537 RGPD5Q99666 1765 aa12.05□□□□□ -0.48
HMGB4-201ENST00000425537 FAM83GA6ND36 823 aa12.05□□□□□ -0.48
HMGB4-201ENST00000425537 VAMP4O75379 141 aa12.05□□□□□ -0.48
HMGB4-201ENST00000425537 MVPQ14764 893 aaKnown RBP12.05□□□□□ -0.48
HMGB4-201ENST00000425537 POTEAQ6S8J7 498 aa12.05□□□□□ -0.48
HMGB4-201ENST00000425537 ANKRD24Q8TF21 1146 aa12.05□□□□□ -0.48
HMGB4-201ENST00000425537 THUMPD2Q9BTF0 503 aaKnown RBP12.05□□□□□ -0.48
HMGB4-201ENST00000425537 BCL2L13Q9BXK5 485 aa12.05□□□□□ -0.48
HMGB4-201ENST00000425537 NCAPD2Q15021 1401 aa12.04□□□□□ -0.48
HMGB4-201ENST00000425537 CAMTA1Q9Y6Y1 1673 aa12.04□□□□□ -0.48
HMGB4-201ENST00000425537 MCM10Q7L590 875 aa12.04□□□□□ -0.48
HMGB4-201ENST00000425537 PANK1Q8TE04 598 aa12.04□□□□□ -0.48
HMGB4-201ENST00000425537 API5Q9BZZ5 524 aaKnown RBP12.04□□□□□ -0.48
HMGB4-201ENST00000425537 COG6Q9Y2V7 657 aa12.04□□□□□ -0.48
HMGB4-201ENST00000425537 COL14A1Q05707 1796 aaKnown RBP12.04□□□□□ -0.48
HMGB4-201ENST00000425537 LRRC37A3O60309 1634 aa12.04□□□□□ -0.48
HMGB4-201ENST00000425537 CPDO75976 1380 aa12.04□□□□□ -0.48
HMGB4-201ENST00000425537 CRB1P82279 1406 aa12.03□□□□□ -0.48
HMGB4-201ENST00000425537 NRAPQ86VF7 1730 aa12.03□□□□□ -0.48
HMGB4-201ENST00000425537 DCTN1Q14203 1278 aa12.03□□□□□ -0.48
HMGB4-201ENST00000425537 RWDD1Q9H446 243 aaPredicted RBP12.03□□□□□ -0.48
HMGB4-201ENST00000425537 STRN4Q9NRL3 753 aa12.03□□□□□ -0.48
HMGB4-201ENST00000425537 BTG4Q9NY30 223 aa12.03□□□□□ -0.48
HMGB4-201ENST00000425537 TSPYL4Q9UJ04 414 aa12.03□□□□□ -0.48
HMGB4-201ENST00000425537 USP21Q9UK80 565 aa12.03□□□□□ -0.48
HMGB4-201ENST00000425537 NOB1Q9ULX3 412 aaKnown RBP12.03□□□□□ -0.48
HMGB4-201ENST00000425537 OVOS2A0A0G2JMS6 1433 aa12.03□□□□□ -0.48
HMGB4-201ENST00000425537 TAF7Q15545 349 aaPredicted RBP12.02□□□□□ -0.49
HMGB4-201ENST00000425537 AKAP4Q5JQC9 854 aa12.02□□□□□ -0.49
HMGB4-201ENST00000425537 C1orf141Q5JVX7 400 aa12.02□□□□□ -0.49
HMGB4-201ENST00000425537 NBPF6Q5VWK0 638 aa12.02□□□□□ -0.49
HMGB4-201ENST00000425537 PPP4R3CPQ6ZMV5 832 aa12.02□□□□□ -0.49
HMGB4-201ENST00000425537 NBPF4Q96M43 638 aa12.02□□□□□ -0.49
HMGB4-201ENST00000425537 CCDC9Q9Y3X0 531 aaKnown RBP12.02□□□□□ -0.49
HMGB4-201ENST00000425537 LMO7Q8WWI1 1683 aa12.01□□□□□ -0.49
HMGB4-201ENST00000425537 TRIM27P14373 513 aa12.01□□□□□ -0.49
HMGB4-201ENST00000425537 MRPL50Q8N5N7 158 aaKnown RBP12.01□□□□□ -0.49
HMGB4-201ENST00000425537 RAPGEF4Q8WZA2 1011 aa12.01□□□□□ -0.49
HMGB4-201ENST00000425537 ERBB3P21860 1342 aa12.01□□□□□ -0.49
HMGB4-201ENST00000425537 KDM2BQ8NHM5 1336 aa12.01□□□□□ -0.49
HMGB4-201ENST00000425537 BCL9LQ86UU0 1499 aa12.01□□□□□ -0.49
HMGB4-201ENST00000425537 SLIT2O94813 1529 aa12.01□□□□□ -0.49
HMGB4-201ENST00000425537 COL18A1P39060 1754 aa12□□□□□ -0.49
HMGB4-201ENST00000425537 ZNF530Q6P9A1 599 aaPredicted RBP12□□□□□ -0.49
HMGB4-201ENST00000425537 ITPRIPQ8IWB1 547 aa12□□□□□ -0.49
HMGB4-201ENST00000425537 C8orf58Q8NAV2 365 aa12□□□□□ -0.49
HMGB4-201ENST00000425537 PTPRCP08575 1304 aa12□□□□□ -0.49
HMGB4-201ENST00000425537 CSB-PGBD3P0DP91 1061 aa11.99□□□□□ -0.49
HMGB4-201ENST00000425537 TATP17735 454 aaPredicted RBP11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms