RNA–Protein interactions for RNA: ENST00000421141.5

PTCH1-206, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 7,659 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-206ENST00000421141 CCDC47Q96A33 483 aaKnown RBP12.96□□□□□ -0.34
PTCH1-206ENST00000421141 CAVIN4Q5BKX8 364 aa12.95□□□□□ -0.34
PTCH1-206ENST00000421141 SMARCC1Q92922 1105 aaPredicted RBP12.95□□□□□ -0.34
PTCH1-206ENST00000421141 ABCC11Q96J66 1382 aa12.95□□□□□ -0.34
PTCH1-206ENST00000421141 CEP126Q9P2H0 1117 aa12.95□□□□□ -0.34
PTCH1-206ENST00000421141 ATP2B2Q01814 1243 aa12.95□□□□□ -0.34
PTCH1-206ENST00000421141 NBPF14Q5TI25 921 aa12.95□□□□□ -0.34
PTCH1-206ENST00000421141 DUSP27Q5VZP5 1158 aa12.95□□□□□ -0.34
PTCH1-206ENST00000421141 ZSCAN29Q8IWY8 852 aaPredicted RBP12.95□□□□□ -0.34
PTCH1-206ENST00000421141 TBX22Q9Y458 520 aa12.94□□□□□ -0.34
PTCH1-206ENST00000421141 LRRCC1Q9C099 1032 aa12.94□□□□□ -0.34
PTCH1-206ENST00000421141 SAMD9LQ8IVG5 1584 aa12.94□□□□□ -0.34
PTCH1-206ENST00000421141 PRAG1Q86YV5 1406 aa12.94□□□□□ -0.34
PTCH1-206ENST00000421141 FOXD4L1Q9NU39 408 aa12.94□□□□□ -0.34
PTCH1-206ENST00000421141 AKAP2Q9Y2D5 859 aa12.94□□□□□ -0.34
PTCH1-206ENST00000421141 YTHDC2Q9H6S0 1430 aaKnown RBP12.93□□□□□ -0.34
PTCH1-206ENST00000421141 MIS18AQ9NYP9 233 aa12.93□□□□□ -0.34
PTCH1-206ENST00000421141 EMILIN1Q9Y6C2 1016 aa12.93□□□□□ -0.34
PTCH1-206ENST00000421141 KDM5CP41229 1560 aa12.93□□□□□ -0.34
PTCH1-206ENST00000421141 FKBP4Q02790 459 aaKnown RBP eCLIP12.93□□□□□ -0.34
PTCH1-206ENST00000421141 ARHGEF12Q9NZN5 1544 aa12.93□□□□□ -0.34
PTCH1-206ENST00000421141 KCNA6P17658 529 aa12.93□□□□□ -0.34
PTCH1-206ENST00000421141 PES1O00541 588 aaKnown RBP12.92□□□□□ -0.34
PTCH1-206ENST00000421141 GCC1Q96CN9 775 aa12.92□□□□□ -0.34
PTCH1-206ENST00000421141 CEP89Q96ST8 783 aa12.92□□□□□ -0.34
PTCH1-206ENST00000421141 ATF7IPQ6VMQ6 1270 aa12.92□□□□□ -0.34
PTCH1-206ENST00000421141 MTMR7Q9Y216 660 aa12.92□□□□□ -0.34
PTCH1-206ENST00000421141 METTL24Q5JXM2 366 aa12.92□□□□□ -0.34
PTCH1-206ENST00000421141 LRP2BPQ9P2M1 347 aa12.92□□□□□ -0.34
PTCH1-206ENST00000421141 PLXNC1O60486 1568 aa12.92□□□□□ -0.34
PTCH1-206ENST00000421141 SRGAP3O43295 1099 aa12.92□□□□□ -0.34
PTCH1-206ENST00000421141 IL2RBP14784 551 aa12.92□□□□□ -0.34
PTCH1-206ENST00000421141 PPP1R42Q7Z4L9 355 aa12.92□□□□□ -0.34
PTCH1-206ENST00000421141 UGGT1Q9NYU2 1555 aa12.92□□□□□ -0.34
PTCH1-206ENST00000421141 PDE3AQ14432 1141 aa12.92□□□□□ -0.34
PTCH1-206ENST00000421141 ATP6V1AP38606 617 aa12.91□□□□□ -0.34
PTCH1-206ENST00000421141 IFIT5Q13325 482 aaKnown RBP12.91□□□□□ -0.34
PTCH1-206ENST00000421141 EFCAB6Q5THR3 1501 aa12.91□□□□□ -0.34
PTCH1-206ENST00000421141 ADGRL2O95490 1459 aa12.91□□□□□ -0.34
PTCH1-206ENST00000421141 RIMBP3CA6NJZ7 1639 aa12.91□□□□□ -0.34
PTCH1-206ENST00000421141 RIMBP3BA6NNM3 1639 aa12.91□□□□□ -0.34
PTCH1-206ENST00000421141 ARHGEF10O15013 1369 aa12.91□□□□□ -0.34
PTCH1-206ENST00000421141 RIMBP3Q9UFD9 1639 aa12.91□□□□□ -0.34
PTCH1-206ENST00000421141 TRMT112Q9UI30 125 aaKnown RBP12.91□□□□□ -0.34
PTCH1-206ENST00000421141 SPHKAPQ2M3C7 1700 aa12.91□□□□□ -0.34
PTCH1-206ENST00000421141 TSR1Q2NL82 804 aaKnown RBP12.91□□□□□ -0.34
PTCH1-206ENST00000421141 RRP12Q5JTH9 1297 aaKnown RBP12.91□□□□□ -0.34
PTCH1-206ENST00000421141 ZNF287Q9HBT7 754 aa12.91□□□□□ -0.34
PTCH1-206ENST00000421141 CNKSR2Q8WXI2 1034 aa12.91□□□□□ -0.34
PTCH1-206ENST00000421141 DBF4Q9UBU7 674 aaPredicted RBP12.91□□□□□ -0.34
PTCH1-206ENST00000421141 MSNP26038 577 aaKnown RBP12.9□□□□□ -0.34
PTCH1-206ENST00000421141 POLD1P28340 1107 aa12.9□□□□□ -0.34
PTCH1-206ENST00000421141 SLF2Q8IX21 1173 aa12.9□□□□□ -0.34
PTCH1-206ENST00000421141 FOXD4L5Q5VV16 416 aaPredicted RBP12.9□□□□□ -0.34
PTCH1-206ENST00000421141 FOXD4L4Q8WXT5 416 aaPredicted RBP12.9□□□□□ -0.34
PTCH1-206ENST00000421141 ACSBG1Q96GR2 724 aa12.9□□□□□ -0.34
PTCH1-206ENST00000421141 C1orf115Q9H7X2 142 aa12.9□□□□□ -0.34
PTCH1-206ENST00000421141 CDC45O75419 566 aa12.89□□□□□ -0.35
PTCH1-206ENST00000421141 DDX46Q7L014 1031 aaKnown RBP12.89□□□□□ -0.35
PTCH1-206ENST00000421141 MYD88Q99836 296 aa12.89□□□□□ -0.35
PTCH1-206ENST00000421141 CDCA7Q9BWT1 371 aaPredicted RBP12.89□□□□□ -0.35
PTCH1-206ENST00000421141 SLC4A3P48751 1232 aa12.89□□□□□ -0.35
PTCH1-206ENST00000421141 AACSQ86V21 672 aa12.89□□□□□ -0.35
PTCH1-206ENST00000421141 CEP152O94986 1710 aa12.89□□□□□ -0.35
PTCH1-206ENST00000421141 IFIT1P09914 478 aaKnown RBP12.89□□□□□ -0.35
PTCH1-206ENST00000421141 CDC5LQ99459 802 aaKnown RBP12.89□□□□□ -0.35
PTCH1-206ENST00000421141 SNRPA1P09661 255 aaKnown RBP12.89□□□□□ -0.35
PTCH1-206ENST00000421141 RAI14Q9P0K7 980 aa12.89□□□□□ -0.35
PTCH1-206ENST00000421141 DISP3Q9P2K9 1392 aa12.89□□□□□ -0.35
PTCH1-206ENST00000421141 CDC42BPBQ9Y5S2 1711 aa12.89□□□□□ -0.35
PTCH1-206ENST00000421141 DCTN1Q14203 1278 aa12.88□□□□□ -0.35
PTCH1-206ENST00000421141 WWC2Q6AWC2 1192 aa12.88□□□□□ -0.35
PTCH1-206ENST00000421141 CCDC85AQ96PX6 553 aaPredicted RBP12.88□□□□□ -0.35
PTCH1-206ENST00000421141 AMER1Q5JTC6 1135 aaPredicted RBP12.88□□□□□ -0.35
PTCH1-206ENST00000421141 CABLES1Q8TDN4 633 aa12.88□□□□□ -0.35
PTCH1-206ENST00000421141 SETDB2Q96T68 719 aa12.88□□□□□ -0.35
PTCH1-206ENST00000421141 BTG4Q9NY30 223 aa12.88□□□□□ -0.35
PTCH1-206ENST00000421141 TET3O43151 1660 aa12.88□□□□□ -0.35
PTCH1-206ENST00000421141 SMC3Q9UQE7 1217 aa12.88□□□□□ -0.35
PTCH1-206ENST00000421141 ADCY10Q96PN6 1610 aa12.88□□□□□ -0.35
PTCH1-206ENST00000421141 NOC3LQ8WTT2 800 aaKnown RBP12.88□□□□□ -0.35
PTCH1-206ENST00000421141 ZNF622Q969S3 477 aaKnown RBP eCLIP12.88□□□□□ -0.35
PTCH1-206ENST00000421141 CDCA7LQ96GN5 454 aa12.87□□□□□ -0.35
PTCH1-206ENST00000421141 SLAIN2Q9P270 581 aa12.87□□□□□ -0.35
PTCH1-206ENST00000421141 NBPF6Q5VWK0 638 aa12.87□□□□□ -0.35
PTCH1-206ENST00000421141 NBPF5PQ86XG9 351 aaPredicted RBP12.87□□□□□ -0.35
PTCH1-206ENST00000421141 NBPF4Q96M43 638 aa12.87□□□□□ -0.35
PTCH1-206ENST00000421141 TTLL12Q14166 644 aaPredicted RBP12.87□□□□□ -0.35
PTCH1-206ENST00000421141 R3HCC1Q9Y3T6 440 aaKnown RBP12.87□□□□□ -0.35
PTCH1-206ENST00000421141 TDO2P48775 406 aa12.87□□□□□ -0.35
PTCH1-206ENST00000421141 ANKRD18BA2A2Z9 1011 aa12.87□□□□□ -0.35
PTCH1-206ENST00000421141 SLC5A1P13866 664 aa12.87□□□□□ -0.35
PTCH1-206ENST00000421141 PTPRKQ15262 1439 aa12.87□□□□□ -0.35
PTCH1-206ENST00000421141 CWC25Q9NXE8 425 aaPredicted RBP12.86□□□□□ -0.35
PTCH1-206ENST00000421141 ABCF2Q9UG63 623 aa12.86□□□□□ -0.35
PTCH1-206ENST00000421141 CLTCQ00610 1675 aaKnown RBP12.86□□□□□ -0.35
PTCH1-206ENST00000421141 FLT4P35916 1363 aa12.86□□□□□ -0.35
PTCH1-206ENST00000421141 DZIP1Q86YF9 867 aaKnown RBP12.86□□□□□ -0.35
PTCH1-206ENST00000421141 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.86□□□□□ -0.35
PTCH1-206ENST00000421141 TPM1P09493 284 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms