RNA–Protein interactions for RNA: ENST00000418628.5

PTCD3-204, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 532 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-204ENST00000418628 KDRP35968 1356 aa25.3■■□□□ 1.64
PTCD3-204ENST00000418628 RREB1Q92766 1687 aa25.29■■□□□ 1.64
PTCD3-204ENST00000418628 IL13P35225 146 aa25.28■■□□□ 1.64
PTCD3-204ENST00000418628 PDE3BQ13370 1112 aa25.28■■□□□ 1.64
PTCD3-204ENST00000418628 FAM182BQ5T319 152 aa25.28■■□□□ 1.64
PTCD3-204ENST00000418628 MARCH10Q8NA82 808 aaPredicted RBP25.28■■□□□ 1.64
PTCD3-204ENST00000418628 PPP2R1AP30153 589 aa25.27■■□□□ 1.64
PTCD3-204ENST00000418628 EXOC5O00471 708 aa25.25■■□□□ 1.63
PTCD3-204ENST00000418628 FAM196AQ6ZSG2 479 aa25.25■■□□□ 1.63
PTCD3-204ENST00000418628 CNGB1Q14028 1251 aaPredicted RBP25.23■■□□□ 1.63
PTCD3-204ENST00000418628 CCDC125Q86Z20 511 aa25.23■■□□□ 1.63
PTCD3-204ENST00000418628 SCN11AQ9UI33 1791 aa25.23■■□□□ 1.63
PTCD3-204ENST00000418628 NUP188Q5SRE5 1749 aa25.21■■□□□ 1.63
PTCD3-204ENST00000418628 RAPGEF4Q8WZA2 1011 aa25.21■■□□□ 1.63
PTCD3-204ENST00000418628 ADAMTS7Q9UKP4 1686 aa25.2■■□□□ 1.63
PTCD3-204ENST00000418628 TATP17735 454 aaPredicted RBP25.2■■□□□ 1.62
PTCD3-204ENST00000418628 RALBP1Q15311 655 aa25.19■■□□□ 1.62
PTCD3-204ENST00000418628 LY75O60449 1722 aa25.19■■□□□ 1.62
PTCD3-204ENST00000418628 DIAPH1O60610 1272 aaKnown RBP25.18■■□□□ 1.62
PTCD3-204ENST00000418628 ZCRB1Q8TBF4 217 aaKnown RBP25.18■■□□□ 1.62
PTCD3-204ENST00000418628 AEBP1Q8IUX7 1158 aa25.17■■□□□ 1.62
PTCD3-204ENST00000418628 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.17■■□□□ 1.621e-9■■■□□ 18.3
PTCD3-204ENST00000418628 PCDH11XQ9BZA7 1347 aa25.16■■□□□ 1.62
PTCD3-204ENST00000418628 PCDH11YQ9BZA8 1340 aa25.16■■□□□ 1.62
PTCD3-204ENST00000418628 DLG5Q8TDM6 1919 aa25.16■■□□□ 1.62
PTCD3-204ENST00000418628 CYP27B1O15528 508 aa25.13■■□□□ 1.61
PTCD3-204ENST00000418628 PRKRIP1Q9H875 184 aaPredicted RBP25.13■■□□□ 1.61
PTCD3-204ENST00000418628 TRIM37O94972 964 aa25.12■■□□□ 1.61
PTCD3-204ENST00000418628 SULT6B1Q6IMI4 303 aa25.12■■□□□ 1.61
PTCD3-204ENST00000418628 MYBBP1AQ9BQG0 1328 aaKnown RBP25.12■■□□□ 1.61
PTCD3-204ENST00000418628 CFAP53Q96M91 514 aa25.11■■□□□ 1.61
PTCD3-204ENST00000418628 SIPA1L3O60292 1781 aaPredicted RBP25.1■■□□□ 1.61
PTCD3-204ENST00000418628 PTF1AQ7RTS3 328 aa25.09■■□□□ 1.61
PTCD3-204ENST00000418628 DDX54Q8TDD1 881 aaKnown RBP25.09■■□□□ 1.61
PTCD3-204ENST00000418628 BCL11BQ9C0K0 894 aaPredicted RBP25.09■■□□□ 1.61
PTCD3-204ENST00000418628 TAF1LQ8IZX4 1826 aa25.08■■□□□ 1.61
PTCD3-204ENST00000418628 NKX1-1Q15270 411 aaPredicted RBP25.08■■□□□ 1.61
PTCD3-204ENST00000418628 SPG7Q9UQ90 795 aa25.08■■□□□ 1.61
PTCD3-204ENST00000418628 PAPPAQ13219 1627 aa25.07■■□□□ 1.6
PTCD3-204ENST00000418628 DEFB132Q7Z7B7 95 aa25.06■■□□□ 1.6
PTCD3-204ENST00000418628 KDM6AO15550 1401 aaPredicted RBP25.05■■□□□ 1.6
PTCD3-204ENST00000418628 HMOX1P09601 288 aa25.05■■□□□ 1.6
PTCD3-204ENST00000418628 SF3B2Q13435 895 aaKnown RBP25.05■■□□□ 1.6
PTCD3-204ENST00000418628 MRC1P22897 1456 aa25.04■■□□□ 1.6
PTCD3-204ENST00000418628 KCNQ2O43526 872 aa25.04■■□□□ 1.6
PTCD3-204ENST00000418628 PHKG2P15735 406 aa25.04■■□□□ 1.6
PTCD3-204ENST00000418628 BAG6P46379 1132 aa25.04■■□□□ 1.6
PTCD3-204ENST00000418628 AMOTQ4VCS5 1084 aa25.04■■□□□ 1.6
PTCD3-204ENST00000418628 CAMKK2Q96RR4 588 aa25.03■■□□□ 1.6
PTCD3-204ENST00000418628 RSPH6AQ9H0K4 717 aa25.03■■□□□ 1.6
PTCD3-204ENST00000418628 ZNF831Q5JPB2 1677 aa25.03■■□□□ 1.6
PTCD3-204ENST00000418628 PLEKHO1Q53GL0 409 aaPredicted RBP25.02■■□□□ 1.6
PTCD3-204ENST00000418628 IFNL2Q8IZJ0 200 aa25.02■■□□□ 1.6
PTCD3-204ENST00000418628 ACSBG1Q96GR2 724 aa25.02■■□□□ 1.6
PTCD3-204ENST00000418628 TUBGCP6Q96RT7 1819 aa25.01■■□□□ 1.59
PTCD3-204ENST00000418628 U2SURPO15042 1029 aaKnown RBP25.01■■□□□ 1.59
PTCD3-204ENST00000418628 NUDCQ9Y266 331 aa25.01■■□□□ 1.59
PTCD3-204ENST00000418628 QSER1Q2KHR3 1735 aa25■■□□□ 1.59
PTCD3-204ENST00000418628 PLSCR1O15162 318 aa25■■□□□ 1.59
PTCD3-204ENST00000418628 APBA3O96018 575 aa25■■□□□ 1.59
PTCD3-204ENST00000418628 CICQ96RK0 1608 aaPredicted RBP25■■□□□ 1.59
PTCD3-204ENST00000418628 C5P01031 1676 aa25■■□□□ 1.59
PTCD3-204ENST00000418628 EN1Q05925 392 aaPredicted RBP24.99■■□□□ 1.59
PTCD3-204ENST00000418628 UBR2Q8IWV8 1755 aa24.99■■□□□ 1.59
PTCD3-204ENST00000418628 ZNF530Q6P9A1 599 aaPredicted RBP24.98■■□□□ 1.59
PTCD3-204ENST00000418628 PRIM1P49642 420 aaKnown RBP24.96■■□□□ 1.59
PTCD3-204ENST00000418628 EZH2Q15910 746 aaKnown RBP24.96■■□□□ 1.59
PTCD3-204ENST00000418628 FCHSD2O94868 740 aa24.95■■□□□ 1.58
PTCD3-204ENST00000418628 U2AF1L5P0DN76 240 aaPredicted RBP24.95■■□□□ 1.58
PTCD3-204ENST00000418628 U2AF1Q01081 240 aaKnown RBP eCLIP24.95■■□□□ 1.58
PTCD3-204ENST00000418628 COL5A3P25940 1745 aaPredicted RBP24.95■■□□□ 1.58
PTCD3-204ENST00000418628 PRKAR2BP31323 418 aa24.94■■□□□ 1.58
PTCD3-204ENST00000418628 MTHFSDQ2M296 383 aaKnown RBP24.94■■□□□ 1.58
PTCD3-204ENST00000418628 HSP90AB1P08238 724 aaKnown RBP24.93■■□□□ 1.58
PTCD3-204ENST00000418628 DCAF5Q96JK2 942 aa24.93■■□□□ 1.58
PTCD3-204ENST00000418628 AKAP4Q5JQC9 854 aa24.92■■□□□ 1.58
PTCD3-204ENST00000418628 CASZ1Q86V15 1759 aa24.91■■□□□ 1.58
PTCD3-204ENST00000418628 PROM2Q8N271 834 aa24.91■■□□□ 1.58
PTCD3-204ENST00000418628 PHACTR3Q96KR7 559 aa24.91■■□□□ 1.58
PTCD3-204ENST00000418628 C1orf141Q5JVX7 400 aa24.9■■□□□ 1.58
PTCD3-204ENST00000418628 PLEKHF1Q96S99 279 aa24.9■■□□□ 1.58
PTCD3-204ENST00000418628 MAP3K5Q99683 1374 aa24.9■■□□□ 1.58
PTCD3-204ENST00000418628 TJP1Q07157 1748 aa24.89■■□□□ 1.58
PTCD3-204ENST00000418628 ERVV-2B6SEH9 535 aa24.89■■□□□ 1.58
PTCD3-204ENST00000418628 UBR3Q6ZT12 1888 aa24.88■■□□□ 1.57
PTCD3-204ENST00000418628 GAS2L2Q8NHY3 880 aa24.88■■□□□ 1.57
PTCD3-204ENST00000418628 SYTL4Q96C24 671 aaPredicted RBP24.88■■□□□ 1.57
PTCD3-204ENST00000418628 PIGBQ92521 554 aa24.87■■□□□ 1.57
PTCD3-204ENST00000418628 KDM3BQ7LBC6 1761 aa24.87■■□□□ 1.57
PTCD3-204ENST00000418628 CEMIPQ8WUJ3 1361 aa24.86■■□□□ 1.57
PTCD3-204ENST00000418628 TXNRD1Q16881 649 aa24.86■■□□□ 1.57
PTCD3-204ENST00000418628 ANP32CO43423 234 aa24.85■■□□□ 1.57
PTCD3-204ENST00000418628 MPRIPQ6WCQ1 1025 aa24.85■■□□□ 1.57
PTCD3-204ENST00000418628 C4BP0C0L5 1744 aa24.85■■□□□ 1.57
PTCD3-204ENST00000418628 PALLDQ8WX93 1383 aa24.84■■□□□ 1.57
PTCD3-204ENST00000418628 MYH14Q7Z406 1995 aaKnown RBP24.84■■□□□ 1.57
PTCD3-204ENST00000418628 TMOD3Q9NYL9 352 aa24.84■■□□□ 1.57
PTCD3-204ENST00000418628 RNMTO43148 476 aaKnown RBP24.83■■□□□ 1.57
PTCD3-204ENST00000418628 CCDC184Q52MB2 194 aa24.83■■□□□ 1.57
PTCD3-204ENST00000418628 KCPQ6ZWJ8 1503 aa24.82■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms