RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 USP19O94966 1318 aa10.59□□□□□ -0.71
USP54-203ENST00000418501 PTPRCP08575 1304 aa10.59□□□□□ -0.71
USP54-203ENST00000418501 TNS3Q68CZ2 1445 aa10.59□□□□□ -0.71
USP54-203ENST00000418501 XPCQ01831 940 aaPredicted RBP10.59□□□□□ -0.71
USP54-203ENST00000418501 COG6Q9Y2V7 657 aa10.59□□□□□ -0.71
USP54-203ENST00000418501 HMMRO75330 724 aa10.59□□□□□ -0.71
USP54-203ENST00000418501 KDRP35968 1356 aa10.59□□□□□ -0.71
USP54-203ENST00000418501 MBIPQ9NS73 344 aa10.59□□□□□ -0.71
USP54-203ENST00000418501 MST1RQ04912 1400 aa10.59□□□□□ -0.71
USP54-203ENST00000418501 MAP2P11137 1827 aaKnown RBP10.59□□□□□ -0.71
USP54-203ENST00000418501 KDM4FA0A1W2PPD8 638 aa10.58□□□□□ -0.72
USP54-203ENST00000418501 PRKCSHP14314 528 aaPredicted RBP10.58□□□□□ -0.72
USP54-203ENST00000418501 AEBP1Q8IUX7 1158 aa10.58□□□□□ -0.72
USP54-203ENST00000418501 SSH1Q8WYL5 1049 aa10.58□□□□□ -0.72
USP54-203ENST00000418501 CHL1O00533 1208 aa10.58□□□□□ -0.72
USP54-203ENST00000418501 MTHFSDQ2M296 383 aaKnown RBP10.58□□□□□ -0.72
USP54-203ENST00000418501 LRRC59Q96AG4 307 aaKnown RBP10.58□□□□□ -0.72
USP54-203ENST00000418501 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.58□□□□□ -0.72
USP54-203ENST00000418501 NOB1Q9ULX3 412 aaKnown RBP10.58□□□□□ -0.72
USP54-203ENST00000418501 NALCNQ8IZF0 1738 aa10.57□□□□□ -0.72
USP54-203ENST00000418501 HOXB7P09629 217 aa10.57□□□□□ -0.72
USP54-203ENST00000418501 NCAPD2Q15021 1401 aa10.57□□□□□ -0.72
USP54-203ENST00000418501 ZC3H6P61129 1189 aaKnown RBP10.57□□□□□ -0.72
USP54-203ENST00000418501 BCL2L13Q9BXK5 485 aa10.57□□□□□ -0.72
USP54-203ENST00000418501 SPINK5Q9NQ38 1064 aaPredicted RBP10.57□□□□□ -0.72
USP54-203ENST00000418501 SPATA31A3Q5VYP0 1347 aa10.57□□□□□ -0.72
USP54-203ENST00000418501 ZNF853P0CG23 659 aa10.57□□□□□ -0.72
USP54-203ENST00000418501 CCT4P50991 539 aaKnown RBP10.56□□□□□ -0.72
USP54-203ENST00000418501 TTC5Q8N0Z6 440 aa10.56□□□□□ -0.72
USP54-203ENST00000418501 PANK1Q8TE04 598 aa10.56□□□□□ -0.72
USP54-203ENST00000418501 TOM1O60784 492 aa10.56□□□□□ -0.72
USP54-203ENST00000418501 DDX58O95786 925 aaKnown RBP10.56□□□□□ -0.72
USP54-203ENST00000418501 MCM10Q7L590 875 aa10.56□□□□□ -0.72
USP54-203ENST00000418501 VAMP4O75379 141 aa10.55□□□□□ -0.72
USP54-203ENST00000418501 IFNL2Q8IZJ0 200 aa10.55□□□□□ -0.72
USP54-203ENST00000418501 LMTK3Q96Q04 1460 aa10.55□□□□□ -0.72
USP54-203ENST00000418501 DDRGK1Q96HY6 314 aa10.55□□□□□ -0.72
USP54-203ENST00000418501 TOM1L2Q6ZVM7 507 aa10.54□□□□□ -0.72
USP54-203ENST00000418501 ELL2O00472 640 aaPredicted RBP10.54□□□□□ -0.72
USP54-203ENST00000418501 NPM2Q86SE8 214 aaKnown RBP10.54□□□□□ -0.72
USP54-203ENST00000418501 BRINP3Q76B58 766 aa10.54□□□□□ -0.72
USP54-203ENST00000418501 ABCC6O95255 1503 aa10.54□□□□□ -0.72
USP54-203ENST00000418501 GNAI3P08754 354 aa10.54□□□□□ -0.72
USP54-203ENST00000418501 MRPL50Q8N5N7 158 aaKnown RBP10.54□□□□□ -0.72
USP54-203ENST00000418501 ZNF335Q9H4Z2 1342 aaPredicted RBP10.53□□□□□ -0.72
USP54-203ENST00000418501 BTBD11A6QL63 1104 aa10.53□□□□□ -0.72
USP54-203ENST00000418501 THUMPD2Q9BTF0 503 aaKnown RBP10.53□□□□□ -0.72
USP54-203ENST00000418501 GCC1Q96CN9 775 aa10.53□□□□□ -0.72
USP54-203ENST00000418501 TRIM27P14373 513 aa10.52□□□□□ -0.72
USP54-203ENST00000418501 SLIT3O75094 1523 aa10.52□□□□□ -0.72
USP54-203ENST00000418501 CPDO75976 1380 aa10.52□□□□□ -0.72
USP54-203ENST00000418501 PIK3C2AO00443 1686 aa10.52□□□□□ -0.73
USP54-203ENST00000418501 USP54Q70EL1 1684 aa10.52□□□□□ -0.73
USP54-203ENST00000418501 DCTN1Q14203 1278 aa10.52□□□□□ -0.73
USP54-203ENST00000418501 HDGFL1Q5TGJ6 251 aa10.52□□□□□ -0.73
USP54-203ENST00000418501 NBPF6Q5VWK0 638 aa10.52□□□□□ -0.73
USP54-203ENST00000418501 NBPF4Q96M43 638 aa10.52□□□□□ -0.73
USP54-203ENST00000418501 FAM83GA6ND36 823 aa10.51□□□□□ -0.73
USP54-203ENST00000418501 SLC4A2P04920 1241 aa10.51□□□□□ -0.73
USP54-203ENST00000418501 OVOS2A0A0G2JMS6 1433 aa10.51□□□□□ -0.73
USP54-203ENST00000418501 ERBB3P21860 1342 aa10.51□□□□□ -0.73
USP54-203ENST00000418501 CDCA7Q9BWT1 371 aaPredicted RBP10.51□□□□□ -0.73
USP54-203ENST00000418501 FKBP5Q13451 457 aaPredicted RBP10.51□□□□□ -0.73
USP54-203ENST00000418501 C20orf194Q5TEA3 1177 aa10.51□□□□□ -0.73
USP54-203ENST00000418501 CASC1Q6TDU7 716 aa10.51□□□□□ -0.73
USP54-203ENST00000418501 RPAP2Q8IXW5 612 aaPredicted RBP10.51□□□□□ -0.73
USP54-203ENST00000418501 SOS2Q07890 1332 aaPredicted RBP10.51□□□□□ -0.73
USP54-203ENST00000418501 AEBP2Q6ZN18 517 aaPredicted RBP10.5□□□□□ -0.73
USP54-203ENST00000418501 USHBP1Q8N6Y0 703 aa10.5□□□□□ -0.73
USP54-203ENST00000418501 DCAF5Q96JK2 942 aa10.5□□□□□ -0.73
USP54-203ENST00000418501 HDAC1Q13547 482 aaPredicted RBP10.5□□□□□ -0.73
USP54-203ENST00000418501 RNMTO43148 476 aaKnown RBP10.5□□□□□ -0.73
USP54-203ENST00000418501 CABP4P57796 275 aa10.5□□□□□ -0.73
USP54-203ENST00000418501 NEXNQ0ZGT2 675 aa10.49□□□□□ -0.73
USP54-203ENST00000418501 FAM161AQ3B820 660 aa10.49□□□□□ -0.73
USP54-203ENST00000418501 TMEM57Q8N5G2 664 aa10.49□□□□□ -0.73
USP54-203ENST00000418501 PCDH11XQ9BZA7 1347 aa10.49□□□□□ -0.73
USP54-203ENST00000418501 PCDH11YQ9BZA8 1340 aa10.49□□□□□ -0.73
USP54-203ENST00000418501 RGS3P49796 1198 aa10.49□□□□□ -0.73
USP54-203ENST00000418501 C8orf58Q8NAV2 365 aa10.49□□□□□ -0.73
USP54-203ENST00000418501 HYPKQ9NX55 129 aa10.48□□□□□ -0.73
USP54-203ENST00000418501 DBF4Q9UBU7 674 aaPredicted RBP10.48□□□□□ -0.73
USP54-203ENST00000418501 RBM19Q9Y4C8 960 aaKnown RBP10.48□□□□□ -0.73
USP54-203ENST00000418501 HSP90AB4PQ58FF6 505 aa10.48□□□□□ -0.73
USP54-203ENST00000418501 SLC4A10Q6U841 1118 aa10.48□□□□□ -0.73
USP54-203ENST00000418501 NFAT5O94916 1531 aa10.48□□□□□ -0.73
USP54-203ENST00000418501 IL2RBP14784 551 aa10.48□□□□□ -0.73
USP54-203ENST00000418501 ZCRB1Q8TBF4 217 aaKnown RBP10.48□□□□□ -0.73
USP54-203ENST00000418501 WDR17Q8IZU2 1322 aa10.47□□□□□ -0.73
USP54-203ENST00000418501 HMGB2P26583 209 aaKnown RBP10.47□□□□□ -0.73
USP54-203ENST00000418501 EIF2S2P20042 333 aaKnown RBP10.47□□□□□ -0.73
USP54-203ENST00000418501 CARD10Q9BWT7 1032 aa10.47□□□□□ -0.73
USP54-203ENST00000418501 TEX13AQ9BXU3 409 aaPredicted RBP10.47□□□□□ -0.73
USP54-203ENST00000418501 RGPD8O14715 1765 aaPredicted RBP10.47□□□□□ -0.73
USP54-203ENST00000418501 GNAI2P04899 355 aa10.47□□□□□ -0.73
USP54-203ENST00000418501 INTS3Q68E01 1043 aaKnown RBP10.47□□□□□ -0.73
USP54-203ENST00000418501 FMNL2Q96PY5 1086 aa10.46□□□□□ -0.73
USP54-203ENST00000418501 STRN4Q9NRL3 753 aa10.46□□□□□ -0.73
USP54-203ENST00000418501 CRB1P82279 1406 aa10.46□□□□□ -0.73
USP54-203ENST00000418501 MPRIPQ6WCQ1 1025 aa10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms