RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 U2SURPO15042 1029 aaKnown RBP7.12□□□□□ -1.27
CCDC88A-203ENST00000412148 TPM2P07951 284 aa7.12□□□□□ -1.27
CCDC88A-203ENST00000412148 SRPK2P78362 688 aaKnown RBP7.12□□□□□ -1.27
CCDC88A-203ENST00000412148 SIRT2Q8IXJ6 389 aa7.12□□□□□ -1.27
CCDC88A-203ENST00000412148 GGNBP2Q9H3C7 697 aa7.12□□□□□ -1.27
CCDC88A-203ENST00000412148 PTPRCP08575 1304 aa7.11□□□□□ -1.27
CCDC88A-203ENST00000412148 HSP90AB1P08238 724 aaKnown RBP7.11□□□□□ -1.27
CCDC88A-203ENST00000412148 GGT6Q6P531 493 aa7.11□□□□□ -1.27
CCDC88A-203ENST00000412148 RPAP2Q8IXW5 612 aaPredicted RBP7.11□□□□□ -1.27
CCDC88A-203ENST00000412148 PEAK1Q9H792 1746 aa7.11□□□□□ -1.27
CCDC88A-203ENST00000412148 UBR1Q8IWV7 1749 aa7.11□□□□□ -1.27
CCDC88A-203ENST00000412148 PRAM1Q96QH2 718 aa7.11□□□□□ -1.27
CCDC88A-203ENST00000412148 CDK19Q9BWU1 502 aa7.11□□□□□ -1.27
CCDC88A-203ENST00000412148 PANK2Q9BZ23 570 aa7.11□□□□□ -1.27
CCDC88A-203ENST00000412148 LNPKQ9C0E8 428 aa7.11□□□□□ -1.27
CCDC88A-203ENST00000412148 OSBPL3Q9H4L5 887 aa7.11□□□□□ -1.27
CCDC88A-203ENST00000412148 CHD2O14647 1828 aaKnown RBP7.11□□□□□ -1.27
CCDC88A-203ENST00000412148 PXDNLA1KZ92 1463 aa7.11□□□□□ -1.27
CCDC88A-203ENST00000412148 SSH2Q76I76 1423 aa7.11□□□□□ -1.27
CCDC88A-203ENST00000412148 PRKAR2BP31323 418 aa7.1□□□□□ -1.27
CCDC88A-203ENST00000412148 TTC22Q5TAA0 569 aa7.1□□□□□ -1.27
CCDC88A-203ENST00000412148 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.1□□□□□ -1.27
CCDC88A-203ENST00000412148 SOS1Q07889 1333 aaPredicted RBP7.1□□□□□ -1.27
CCDC88A-203ENST00000412148 PLEKHM2Q8IWE5 1019 aa7.1□□□□□ -1.27
CCDC88A-203ENST00000412148 ANKRD44Q8N8A2 993 aa7.1□□□□□ -1.27
CCDC88A-203ENST00000412148 DIP2BQ9P265 1576 aa7.1□□□□□ -1.27
CCDC88A-203ENST00000412148 PDLIM2Q96JY6 352 aa7.1□□□□□ -1.27
CCDC88A-203ENST00000412148 OVOS2A0A0J9YW53 1432 aa7.09□□□□□ -1.27
CCDC88A-203ENST00000412148 OVOS2Q6IE36 1432 aa7.09□□□□□ -1.27
CCDC88A-203ENST00000412148 MCM5P33992 734 aa7.09□□□□□ -1.27
CCDC88A-203ENST00000412148 ANKRD45Q5TZF3 282 aa7.09□□□□□ -1.27
CCDC88A-203ENST00000412148 USP26Q9BXU7 913 aa7.09□□□□□ -1.27
CCDC88A-203ENST00000412148 MBIPQ9NS73 344 aa7.09□□□□□ -1.27
CCDC88A-203ENST00000412148 BAG4O95429 457 aaKnown RBP7.09□□□□□ -1.27
CCDC88A-203ENST00000412148 TWISTNBQ3B726 338 aaPredicted RBP7.09□□□□□ -1.27
CCDC88A-203ENST00000412148 GLIPR1L2Q4G1C9 344 aa7.09□□□□□ -1.27
CCDC88A-203ENST00000412148 MARF1Q9Y4F3 1742 aaKnown RBP7.09□□□□□ -1.27
CCDC88A-203ENST00000412148 USP31Q70CQ4 1352 aa7.09□□□□□ -1.28
CCDC88A-203ENST00000412148 GSPT1P15170 499 aaKnown RBP7.08□□□□□ -1.28
CCDC88A-203ENST00000412148 MCM2P49736 904 aa7.08□□□□□ -1.28
CCDC88A-203ENST00000412148 GAS2L3Q86XJ1 694 aa7.08□□□□□ -1.28
CCDC88A-203ENST00000412148 ZSCAN30Q86W11 494 aa7.08□□□□□ -1.28
CCDC88A-203ENST00000412148 GAS2L2Q8NHY3 880 aa7.08□□□□□ -1.28
CCDC88A-203ENST00000412148 CABP1Q9NZU7 370 aa7.08□□□□□ -1.28
CCDC88A-203ENST00000412148 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.08□□□□□ -1.28
CCDC88A-203ENST00000412148 ZNF500O60304 480 aaPredicted RBP7.07□□□□□ -1.28
CCDC88A-203ENST00000412148 CD2BP2O95400 341 aaKnown RBP7.07□□□□□ -1.28
CCDC88A-203ENST00000412148 TRIM44Q96DX7 344 aaPredicted RBP7.07□□□□□ -1.28
CCDC88A-203ENST00000412148 ERBB4Q15303 1308 aa7.07□□□□□ -1.28
CCDC88A-203ENST00000412148 MINK1Q8N4C8 1332 aaPredicted RBP7.07□□□□□ -1.28
CCDC88A-203ENST00000412148 CRB1P82279 1406 aa7.07□□□□□ -1.28
CCDC88A-203ENST00000412148 PHRF1Q9P1Y6 1649 aaKnown RBP7.07□□□□□ -1.28
CCDC88A-203ENST00000412148 CHL1O00533 1208 aa7.07□□□□□ -1.28
CCDC88A-203ENST00000412148 OFD1O75665 1012 aa7.07□□□□□ -1.28
CCDC88A-203ENST00000412148 REC8O95072 547 aa7.07□□□□□ -1.28
CCDC88A-203ENST00000412148 VASPP50552 380 aaPredicted RBP7.07□□□□□ -1.28
CCDC88A-203ENST00000412148 ANAPC15P60006 121 aa7.07□□□□□ -1.28
CCDC88A-203ENST00000412148 CASC1Q6TDU7 716 aa7.07□□□□□ -1.28
CCDC88A-203ENST00000412148 PHACTR3Q96KR7 559 aa7.07□□□□□ -1.28
CCDC88A-203ENST00000412148 AOX1Q06278 1338 aa7.07□□□□□ -1.28
CCDC88A-203ENST00000412148 WASLO00401 505 aaPredicted RBP7.06□□□□□ -1.28
CCDC88A-203ENST00000412148 TSPYL6Q8N831 410 aa7.06□□□□□ -1.28
CCDC88A-203ENST00000412148 LMBRD1Q9NUN5 540 aa7.06□□□□□ -1.28
CCDC88A-203ENST00000412148 KDRP35968 1356 aa7.06□□□□□ -1.28
CCDC88A-203ENST00000412148 ST18O60284 1047 aa7.06□□□□□ -1.28
CCDC88A-203ENST00000412148 HSP90AA1P07900 732 aaKnown RBP7.06□□□□□ -1.28
CCDC88A-203ENST00000412148 NASPP49321 788 aaPredicted RBP7.06□□□□□ -1.28
CCDC88A-203ENST00000412148 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.06□□□□□ -1.28
CCDC88A-203ENST00000412148 INTS4Q96HW7 963 aaKnown RBP7.06□□□□□ -1.28
CCDC88A-203ENST00000412148 TTC21BQ7Z4L5 1316 aa7.06□□□□□ -1.28
CCDC88A-203ENST00000412148 SALL3Q9BXA9 1300 aa7.06□□□□□ -1.28
CCDC88A-203ENST00000412148 KDM3BQ7LBC6 1761 aa7.06□□□□□ -1.28
CCDC88A-203ENST00000412148 PLEKHG5O94827 1062 aa7.06□□□□□ -1.28
CCDC88A-203ENST00000412148 CEP85Q6P2H3 762 aa7.06□□□□□ -1.28
CCDC88A-203ENST00000412148 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.06□□□□□ -1.28
CCDC88A-203ENST00000412148 ANP32BQ92688 251 aaKnown RBP7.06□□□□□ -1.28
CCDC88A-203ENST00000412148 GZF1Q9H116 711 aaPredicted RBP7.06□□□□□ -1.28
CCDC88A-203ENST00000412148 PTPRUQ92729 1446 aa7.06□□□□□ -1.28
CCDC88A-203ENST00000412148 SSFA2P28290 1259 aa7.05□□□□□ -1.28
CCDC88A-203ENST00000412148 CUL4AQ13619 759 aa7.05□□□□□ -1.28
CCDC88A-203ENST00000412148 C8orf58Q8NAV2 365 aa7.05□□□□□ -1.28
CCDC88A-203ENST00000412148 NOL7Q9UMY1 257 aaKnown RBP7.05□□□□□ -1.28
CCDC88A-203ENST00000412148 MED1Q15648 1581 aaPredicted RBP7.05□□□□□ -1.28
CCDC88A-203ENST00000412148 RGL2O15211 777 aa7.05□□□□□ -1.28
CCDC88A-203ENST00000412148 MBD3O95983 291 aa7.05□□□□□ -1.28
CCDC88A-203ENST00000412148 SPRYD3Q8NCJ5 442 aa7.05□□□□□ -1.28
CCDC88A-203ENST00000412148 MAP7D2Q96T17 732 aa7.05□□□□□ -1.28
CCDC88A-203ENST00000412148 BABAM1Q9NWV8 329 aa7.05□□□□□ -1.28
CCDC88A-203ENST00000412148 HMMRO75330 724 aa7.04□□□□□ -1.28
CCDC88A-203ENST00000412148 CCDC61Q9Y6R9 512 aa7.04□□□□□ -1.28
CCDC88A-203ENST00000412148 DDX49Q9Y6V7 483 aaKnown RBP7.04□□□□□ -1.28
CCDC88A-203ENST00000412148 MSH6P52701 1360 aa7.04□□□□□ -1.28
CCDC88A-203ENST00000412148 ERC2O15083 957 aa7.04□□□□□ -1.28
CCDC88A-203ENST00000412148 HTATSF1O43719 755 aaKnown RBP7.04□□□□□ -1.28
CCDC88A-203ENST00000412148 ATXN8OSP0DMR3 200 aa7.04□□□□□ -1.28
CCDC88A-203ENST00000412148 ZSCAN23Q3MJ62 389 aa7.04□□□□□ -1.28
CCDC88A-203ENST00000412148 NAP1L5Q96NT1 182 aaPredicted RBP7.04□□□□□ -1.28
CCDC88A-203ENST00000412148 PDCL3Q9H2J4 239 aa7.04□□□□□ -1.28
CCDC88A-203ENST00000412148 TSPOAP1O95153 1857 aa7.04□□□□□ -1.28
CCDC88A-203ENST00000412148 PIK3C2AO00443 1686 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms