RNA–Protein interactions for RNA: ENST00000409958.6

VSX1-204, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,305 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-204ENST00000409958 CNGB1Q14028 1251 aaPredicted RBP28.16■■■□□ 2.1
VSX1-204ENST00000409958 IGSF1Q8N6C5 1336 aa28.14■■■□□ 2.1
VSX1-204ENST00000409958 CAMKK2Q96RR4 588 aa28.14■■■□□ 2.09
VSX1-204ENST00000409958 PARD3Q8TEW0 1356 aa28.12■■■□□ 2.09
VSX1-204ENST00000409958 SHANK3Q9BYB0 1731 aa28.12■■■□□ 2.09
VSX1-204ENST00000409958 EZH2Q15910 746 aaKnown RBP28.11■■■□□ 2.09
VSX1-204ENST00000409958 PTF1AQ7RTS3 328 aa28.11■■■□□ 2.09
VSX1-204ENST00000409958 IL13P35225 146 aa28.1■■■□□ 2.09
VSX1-204ENST00000409958 PCDH11XQ9BZA7 1347 aa28.09■■■□□ 2.09
VSX1-204ENST00000409958 PCDH11YQ9BZA8 1340 aa28.09■■■□□ 2.09
VSX1-204ENST00000409958 KCNQ2O43526 872 aa28.09■■■□□ 2.09
VSX1-204ENST00000409958 ACSBG1Q96GR2 724 aa28.09■■■□□ 2.09
VSX1-204ENST00000409958 NHSQ6T4R5 1651 aa28.08■■■□□ 2.09
VSX1-204ENST00000409958 PLEKHG2Q9H7P9 1386 aa28.08■■■□□ 2.09
VSX1-204ENST00000409958 PLSCR1O15162 318 aa28.08■■■□□ 2.09
VSX1-204ENST00000409958 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.08■■■□□ 2.09
VSX1-204ENST00000409958 PKD1L3Q7Z443 1732 aa28.07■■■□□ 2.08
VSX1-204ENST00000409958 KAT6BQ8WYB5 2073 aa28.06■■■□□ 2.08
VSX1-204ENST00000409958 SPG7Q9UQ90 795 aa28.06■■■□□ 2.08
VSX1-204ENST00000409958 RGPD3A6NKT7 1758 aaPredicted RBP28.04■■■□□ 2.08
VSX1-204ENST00000409958 RGPD4Q7Z3J3 1758 aa28.04■■■□□ 2.08
VSX1-204ENST00000409958 CYP27B1O15528 508 aa28.03■■■□□ 2.08
VSX1-204ENST00000409958 DIAPH1O60610 1272 aaKnown RBP28.02■■■□□ 2.08
VSX1-204ENST00000409958 DDX10Q13206 875 aaKnown RBP28.02■■■□□ 2.08
VSX1-204ENST00000409958 KDRP35968 1356 aa28.02■■■□□ 2.08
VSX1-204ENST00000409958 SULT6B1Q6IMI4 303 aa28.01■■■□□ 2.07
VSX1-204ENST00000409958 RREB1Q92766 1687 aa28.01■■■□□ 2.07
VSX1-204ENST00000409958 PSDA5PKW4 1024 aaPredicted RBP28■■■□□ 2.07
VSX1-204ENST00000409958 PPP2R1AP30153 589 aa28■■■□□ 2.07
VSX1-204ENST00000409958 AEBP1Q8IUX7 1158 aa28■■■□□ 2.07
VSX1-204ENST00000409958 COL3A1P02461 1466 aaPredicted RBP28■■■□□ 2.07
VSX1-204ENST00000409958 PRIM1P49642 420 aaKnown RBP27.99■■■□□ 2.07
VSX1-204ENST00000409958 DOT1LQ8TEK3 1739 aa27.99■■■□□ 2.07
VSX1-204ENST00000409958 NUP188Q5SRE5 1749 aa27.98■■■□□ 2.07
VSX1-204ENST00000409958 BTAF1O14981 1849 aa27.97■■■□□ 2.07
VSX1-204ENST00000409958 NKX1-1Q15270 411 aaPredicted RBP27.97■■■□□ 2.07
VSX1-204ENST00000409958 SYTL4Q96C24 671 aaPredicted RBP27.97■■■□□ 2.07
VSX1-204ENST00000409958 AMOTQ4VCS5 1084 aa27.96■■■□□ 2.07
VSX1-204ENST00000409958 PLEKHO1Q53GL0 409 aaPredicted RBP27.96■■■□□ 2.07
VSX1-204ENST00000409958 IFNL2Q8IZJ0 200 aa27.96■■■□□ 2.07
VSX1-204ENST00000409958 CFAP53Q96M91 514 aa27.96■■■□□ 2.07
VSX1-204ENST00000409958 PHKG2P15735 406 aa27.94■■■□□ 2.06
VSX1-204ENST00000409958 PROM2Q8N271 834 aa27.94■■■□□ 2.06
VSX1-204ENST00000409958 R3HDM1Q15032 1099 aaKnown RBP27.93■■■□□ 2.06
VSX1-204ENST00000409958 TXNRD1Q16881 649 aa27.93■■■□□ 2.06
VSX1-204ENST00000409958 NBPF14Q5TI25 921 aa27.92■■■□□ 2.06
VSX1-204ENST00000409958 HMOX1P09601 288 aa27.91■■■□□ 2.06
VSX1-204ENST00000409958 U2SURPO15042 1029 aaKnown RBP27.89■■■□□ 2.05
VSX1-204ENST00000409958 ZNF530Q6P9A1 599 aaPredicted RBP27.89■■■□□ 2.05
VSX1-204ENST00000409958 TOGARAM1Q9Y4F4 1720 aa27.88■■■□□ 2.05
VSX1-204ENST00000409958 HSP90AB1P08238 724 aaKnown RBP27.88■■■□□ 2.05
VSX1-204ENST00000409958 RALBP1Q15311 655 aa27.88■■■□□ 2.05
VSX1-204ENST00000409958 NUDCQ9Y266 331 aa27.87■■■□□ 2.05
VSX1-204ENST00000409958 SRCAPQ6ZRS2 3230 aa27.86■■■□□ 2.05
VSX1-204ENST00000409958 MPRIPQ6WCQ1 1025 aa27.86■■■□□ 2.05
VSX1-204ENST00000409958 C1orf141Q5JVX7 400 aa27.85■■■□□ 2.05
VSX1-204ENST00000409958 ITGB4P16144 1822 aa27.84■■■□□ 2.05
VSX1-204ENST00000409958 SLC27A3Q5K4L6 730 aa27.84■■■□□ 2.05
VSX1-204ENST00000409958 DCAF5Q96JK2 942 aa27.84■■■□□ 2.05
VSX1-204ENST00000409958 ANO8Q9HCE9 1232 aaPredicted RBP27.83■■■□□ 2.05
VSX1-204ENST00000409958 ZNF316A6NFI3 1004 aaPredicted RBP27.82■■■□□ 2.04
VSX1-204ENST00000409958 PIGBQ92521 554 aa27.82■■■□□ 2.04
VSX1-204ENST00000409958 ERVV-2B6SEH9 535 aa27.81■■■□□ 2.04
VSX1-204ENST00000409958 TMOD3Q9NYL9 352 aa27.81■■■□□ 2.04
VSX1-204ENST00000409958 LY75O60449 1722 aa27.8■■■□□ 2.04
VSX1-204ENST00000409958 AKAP4Q5JQC9 854 aa27.8■■■□□ 2.04
VSX1-204ENST00000409958 LRRC4BQ9NT99 713 aa27.8■■■□□ 2.04
VSX1-204ENST00000409958 KDM6AO15550 1401 aaPredicted RBP27.79■■■□□ 2.04
VSX1-204ENST00000409958 U2AF1L5P0DN76 240 aaPredicted RBP27.78■■■□□ 2.04
VSX1-204ENST00000409958 U2AF1Q01081 240 aaKnown RBP eCLIP27.78■■■□□ 2.04
VSX1-204ENST00000409958 MTHFSDQ2M296 383 aaKnown RBP27.78■■■□□ 2.04
VSX1-204ENST00000409958 SMARCC1Q92922 1105 aaPredicted RBP27.78■■■□□ 2.04
VSX1-204ENST00000409958 STK32BQ9NY57 414 aa27.78■■■□□ 2.04
VSX1-204ENST00000409958 RSPH6AQ9H0K4 717 aa27.77■■■□□ 2.04
VSX1-204ENST00000409958 PALLDQ8WX93 1383 aa27.77■■■□□ 2.04
VSX1-204ENST00000409958 PAPPAQ13219 1627 aa27.76■■■□□ 2.03
VSX1-204ENST00000409958 CCNL1Q9UK58 526 aaPredicted RBP27.76■■■□□ 2.03
VSX1-204ENST00000409958 SLC15A2Q16348 729 aa27.75■■■□□ 2.03
VSX1-204ENST00000409958 MYBBP1AQ9BQG0 1328 aaKnown RBP27.75■■■□□ 2.03
VSX1-204ENST00000409958 LRP5O75197 1615 aa27.75■■■□□ 2.03
VSX1-204ENST00000409958 PRKAR2BP31323 418 aa27.74■■■□□ 2.03
VSX1-204ENST00000409958 FCHSD2O94868 740 aa27.73■■■□□ 2.03
VSX1-204ENST00000409958 CABP4P57796 275 aa27.72■■■□□ 2.03
VSX1-204ENST00000409958 GAS2L2Q8NHY3 880 aa27.72■■■□□ 2.03
VSX1-204ENST00000409958 KCNQ4P56696 695 aa27.71■■■□□ 2.03
VSX1-204ENST00000409958 PRKRIP1Q9H875 184 aaPredicted RBP27.71■■■□□ 2.03
VSX1-204ENST00000409958 ASAP1Q9ULH1 1129 aa27.71■■■□□ 2.03
VSX1-204ENST00000409958 HMGB2P26583 209 aaKnown RBP27.7■■■□□ 2.03
VSX1-204ENST00000409958 SCN11AQ9UI33 1791 aa27.7■■■□□ 2.02
VSX1-204ENST00000409958 AKT1S1Q96B36 256 aa27.69■■■□□ 2.02
VSX1-204ENST00000409958 ATG3Q9NT62 314 aa27.69■■■□□ 2.02
VSX1-204ENST00000409958 RNMTO43148 476 aaKnown RBP27.68■■■□□ 2.02
VSX1-204ENST00000409958 ZNF827Q17R98 1081 aa27.68■■■□□ 2.02
VSX1-204ENST00000409958 PHACTR3Q96KR7 559 aa27.68■■■□□ 2.02
VSX1-204ENST00000409958 NFATC2IPQ8NCF5 419 aa27.67■■■□□ 2.02
VSX1-204ENST00000409958 LGR6Q9HBX8 967 aa27.67■■■□□ 2.02
VSX1-204ENST00000409958 PDGFDQ9GZP0 370 aaPredicted RBP27.67■■■□□ 2.02
VSX1-204ENST00000409958 MAP3K5Q99683 1374 aa27.66■■■□□ 2.02
VSX1-204ENST00000409958 ADAMTS7Q9UKP4 1686 aa27.66■■■□□ 2.02
VSX1-204ENST00000409958 LOC102724428A0A0B4J2F2 783 aa27.66■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms