RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 HAP1P54257 671 aaPredicted RBP26.34■■□□□ 1.81
USP39-203ENST00000409470 GCP02774 474 aa26.32■■□□□ 1.8
USP39-203ENST00000409470 USHBP1Q8N6Y0 703 aa26.32■■□□□ 1.8
USP39-203ENST00000409470 STRCP1A6NGW2 1772 aa26.31■■□□□ 1.8
USP39-203ENST00000409470 MSH5O43196 834 aa26.31■■□□□ 1.8
USP39-203ENST00000409470 HTATSF1O43719 755 aaKnown RBP26.31■■□□□ 1.8
USP39-203ENST00000409470 KIAA0232Q92628 1395 aa26.31■■□□□ 1.8
USP39-203ENST00000409470 GNAT3A8MTJ3 354 aa26.3■■□□□ 1.8
USP39-203ENST00000409470 KRT24Q2M2I5 525 aa26.3■■□□□ 1.8
USP39-203ENST00000409470 TRPM3Q9HCF6 1732 aaPredicted RBP26.29■■□□□ 1.8
USP39-203ENST00000409470 TSPYL4Q9UJ04 414 aa26.29■■□□□ 1.8
USP39-203ENST00000409470 SLIT3O75094 1523 aa26.29■■□□□ 1.8
USP39-203ENST00000409470 ZBTB40Q9NUA8 1239 aa26.29■■□□□ 1.8
USP39-203ENST00000409470 MIS18AQ9NYP9 233 aa26.29■■□□□ 1.8
USP39-203ENST00000409470 MST1RQ04912 1400 aa26.29■■□□□ 1.8
USP39-203ENST00000409470 NCOA3Q9Y6Q9 1424 aa26.29■■□□□ 1.8
USP39-203ENST00000409470 DCCP43146 1447 aa26.28■■□□□ 1.8
USP39-203ENST00000409470 FAM161AQ3B820 660 aa26.27■■□□□ 1.8
USP39-203ENST00000409470 PHRF1Q9P1Y6 1649 aaKnown RBP26.27■■□□□ 1.8
USP39-203ENST00000409470 NBPF6Q5VWK0 638 aa26.27■■□□□ 1.8
USP39-203ENST00000409470 ARHGEF25Q86VW2 580 aa26.27■■□□□ 1.8
USP39-203ENST00000409470 NBPF4Q96M43 638 aa26.27■■□□□ 1.8
USP39-203ENST00000409470 API5Q9BZZ5 524 aaKnown RBP26.27■■□□□ 1.8
USP39-203ENST00000409470 USP19O94966 1318 aa26.26■■□□□ 1.8
USP39-203ENST00000409470 NPM2Q86SE8 214 aaKnown RBP26.26■■□□□ 1.79
USP39-203ENST00000409470 MAP3K5Q99683 1374 aa26.26■■□□□ 1.79
USP39-203ENST00000409470 CHMP4BQ9H444 224 aaKnown RBP26.26■■□□□ 1.79
USP39-203ENST00000409470 CADPS2Q86UW7 1296 aa26.25■■□□□ 1.79
USP39-203ENST00000409470 HDAC1Q13547 482 aaPredicted RBP26.24■■□□□ 1.79
USP39-203ENST00000409470 PDZRN3Q9UPQ7 1066 aa26.24■■□□□ 1.79
USP39-203ENST00000409470 ABCC4O15439 1325 aa26.24■■□□□ 1.79
USP39-203ENST00000409470 MSH6P52701 1360 aa26.23■■□□□ 1.79
USP39-203ENST00000409470 LRRC59Q96AG4 307 aaKnown RBP26.22■■□□□ 1.79
USP39-203ENST00000409470 C8orf34Q49A92 452 aa26.21■■□□□ 1.79
USP39-203ENST00000409470 LRRC37A3O60309 1634 aa26.21■■□□□ 1.79
USP39-203ENST00000409470 ZBTB7BO15156 539 aaPredicted RBP26.21■■□□□ 1.79
USP39-203ENST00000409470 KDM4FA0A1W2PPD8 638 aa26.2■■□□□ 1.78
USP39-203ENST00000409470 IL17REQ8NFR9 667 aa26.2■■□□□ 1.78
USP39-203ENST00000409470 DDX17Q92841 729 aaKnown RBP26.2■■□□□ 1.78
USP39-203ENST00000409470 ERICH6Q7L0X2 663 aa26.19■■□□□ 1.78
USP39-203ENST00000409470 ANKRD24Q8TF21 1146 aa26.19■■□□□ 1.78
USP39-203ENST00000409470 IPO9Q96P70 1041 aaKnown RBP26.19■■□□□ 1.78
USP39-203ENST00000409470 ALS2Q96Q42 1657 aa26.18■■□□□ 1.78
USP39-203ENST00000409470 RGPD2P0DJD1 1756 aa26.18■■□□□ 1.78
USP39-203ENST00000409470 LMTK3Q96Q04 1460 aa26.17■■□□□ 1.78
USP39-203ENST00000409470 NPHP3Q7Z494 1330 aa26.17■■□□□ 1.78
USP39-203ENST00000409470 TAF7Q15545 349 aaPredicted RBP26.16■■□□□ 1.78
USP39-203ENST00000409470 ZC3H6P61129 1189 aaKnown RBP26.15■■□□□ 1.78
USP39-203ENST00000409470 PTPRCP08575 1304 aa26.15■■□□□ 1.78
USP39-203ENST00000409470 SLC4A2P04920 1241 aa26.15■■□□□ 1.78
USP39-203ENST00000409470 BABAM1Q9NWV8 329 aa26.14■■□□□ 1.78
USP39-203ENST00000409470 AXIN2Q9Y2T1 843 aa26.14■■□□□ 1.78
USP39-203ENST00000409470 PLEKHO1Q53GL0 409 aaPredicted RBP26.14■■□□□ 1.77
USP39-203ENST00000409470 SMC5Q8IY18 1101 aa26.13■■□□□ 1.77
USP39-203ENST00000409470 C1orf115Q9H7X2 142 aa26.13■■□□□ 1.77
USP39-203ENST00000409470 MED1Q15648 1581 aaPredicted RBP26.13■■□□□ 1.77
USP39-203ENST00000409470 AMOTQ4VCS5 1084 aa26.11■■□□□ 1.77
USP39-203ENST00000409470 INTS3Q68E01 1043 aaKnown RBP26.11■■□□□ 1.77
USP39-203ENST00000409470 ZNF530Q6P9A1 599 aaPredicted RBP26.11■■□□□ 1.77
USP39-203ENST00000409470 STRCQ7RTU9 1775 aa26.11■■□□□ 1.77
USP39-203ENST00000409470 NOP58Q9Y2X3 529 aaKnown RBP26.1■■□□□ 1.77
USP39-203ENST00000409470 STK31Q9BXU1 1019 aa26.1■■□□□ 1.77
USP39-203ENST00000409470 RGS12O14924 1447 aa26.09■■□□□ 1.77
USP39-203ENST00000409470 NCAPD2Q15021 1401 aa26.09■■□□□ 1.77
USP39-203ENST00000409470 AKAP4Q5JQC9 854 aa26.09■■□□□ 1.77
USP39-203ENST00000409470 CEMIPQ8WUJ3 1361 aa26.09■■□□□ 1.77
USP39-203ENST00000409470 TNS3Q68CZ2 1445 aa26.09■■□□□ 1.77
USP39-203ENST00000409470 XIRP1Q702N8 1843 aaKnown RBP26.08■■□□□ 1.77
USP39-203ENST00000409470 ANP32EQ9BTT0 268 aa26.08■■□□□ 1.77
USP39-203ENST00000409470 ZBTB47Q9UFB7 747 aaPredicted RBP26.08■■□□□ 1.77
USP39-203ENST00000409470 CCDC30Q5VVM6 783 aa26.07■■□□□ 1.76
USP39-203ENST00000409470 LGR6Q9HBX8 967 aa26.07■■□□□ 1.76
USP39-203ENST00000409470 SOS1Q07889 1333 aaPredicted RBP26.07■■□□□ 1.76
USP39-203ENST00000409470 C1orf141Q5JVX7 400 aa26.07■■□□□ 1.76
USP39-203ENST00000409470 ERBB3P21860 1342 aa26.06■■□□□ 1.76
USP39-203ENST00000409470 RGPD5Q99666 1765 aa26.06■■□□□ 1.76
USP39-203ENST00000409470 CABLES1Q8TDN4 633 aa26.05■■□□□ 1.76
USP39-203ENST00000409470 VIRMAQ69YN4 1812 aaKnown RBP26.05■■□□□ 1.76
USP39-203ENST00000409470 LMO7Q8WWI1 1683 aa26.05■■□□□ 1.76
USP39-203ENST00000409470 PXDNQ92626 1479 aa26.05■■□□□ 1.76
USP39-203ENST00000409470 G2E3Q7L622 706 aa26.05■■□□□ 1.76
USP39-203ENST00000409470 CAMTA1Q9Y6Y1 1673 aa26.04■■□□□ 1.76
USP39-203ENST00000409470 TEFQ10587 303 aa26.04■■□□□ 1.76
USP39-203ENST00000409470 SPATA31A3Q5VYP0 1347 aa26.04■■□□□ 1.76
USP39-203ENST00000409470 ZNF335Q9H4Z2 1342 aaPredicted RBP26.04■■□□□ 1.76
USP39-203ENST00000409470 MPRIPQ6WCQ1 1025 aa26.04■■□□□ 1.76
USP39-203ENST00000409470 BRINP3Q76B58 766 aa26.04■■□□□ 1.76
USP39-203ENST00000409470 NECTIN2Q92692 538 aa26.04■■□□□ 1.76
USP39-203ENST00000409470 GCC1Q96CN9 775 aa26.04■■□□□ 1.76
USP39-203ENST00000409470 NUCB1Q02818 461 aa26.03■■□□□ 1.76
USP39-203ENST00000409470 NLRP2Q9NX02 1062 aa26.02■■□□□ 1.76
USP39-203ENST00000409470 SIRT2Q8IXJ6 389 aa26.01■■□□□ 1.75
USP39-203ENST00000409470 SLC4A10Q6U841 1118 aa26■■□□□ 1.75
USP39-203ENST00000409470 DDRGK1Q96HY6 314 aa26■■□□□ 1.75
USP39-203ENST00000409470 CHD1LQ86WJ1 897 aa26■■□□□ 1.75
USP39-203ENST00000409470 FAM208AQ9UK61 1670 aaKnown RBP26■■□□□ 1.75
USP39-203ENST00000409470 F6X3S4 739 aa25.99■■□□□ 1.75
USP39-203ENST00000409470 RNMTO43148 476 aaKnown RBP25.99■■□□□ 1.75
USP39-203ENST00000409470 LNPKQ9C0E8 428 aa25.99■■□□□ 1.75
USP39-203ENST00000409470 BTBD11A6QL63 1104 aa25.98■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms