RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 DDX54Q8TDD1 881 aaKnown RBP15.25■□□□□ 0.03
SKA3-203ENST00000400018 CRYBG1Q9Y4K1 1723 aa15.25■□□□□ 0.03
SKA3-203ENST00000400018 KCNQ3O43525 872 aa15.24■□□□□ 0.03
SKA3-203ENST00000400018 KAT6BQ8WYB5 2073 aa15.24■□□□□ 0.03
SKA3-203ENST00000400018 MBIPQ9NS73 344 aa15.24■□□□□ 0.03
SKA3-203ENST00000400018 MEGF6O75095 1541 aa15.24■□□□□ 0.03
SKA3-203ENST00000400018 A0A0G2JS52 829 aa15.23■□□□□ 0.03
SKA3-203ENST00000400018 TSHZ2Q9NRE2 1034 aa15.23■□□□□ 0.03
SKA3-203ENST00000400018 KDRP35968 1356 aa15.23■□□□□ 0.03
SKA3-203ENST00000400018 COL16A1Q07092 1604 aaPredicted RBP15.23■□□□□ 0.03
SKA3-203ENST00000400018 FAM182BQ5T319 152 aa15.23■□□□□ 0.03
SKA3-203ENST00000400018 FRAT1Q92837 279 aaPredicted RBP15.23■□□□□ 0.03
SKA3-203ENST00000400018 USP54Q70EL1 1684 aa15.23■□□□□ 0.03
SKA3-203ENST00000400018 COL18A1P39060 1754 aa15.23■□□□□ 0.03
SKA3-203ENST00000400018 RTL1A6NKG5 1358 aa15.22■□□□□ 0.03
SKA3-203ENST00000400018 E9PSI1 815 aa15.22■□□□□ 0.03
SKA3-203ENST00000400018 C8orf58Q8NAV2 365 aa15.22■□□□□ 0.03
SKA3-203ENST00000400018 ZNF428Q96B54 188 aa15.22■□□□□ 0.03
SKA3-203ENST00000400018 RAPGEF4Q8WZA2 1011 aa15.22■□□□□ 0.03
SKA3-203ENST00000400018 ABCA3Q99758 1704 aa15.21■□□□□ 0.03
SKA3-203ENST00000400018 GOLGB1Q14789 3259 aaKnown RBP15.21■□□□□ 0.03
SKA3-203ENST00000400018 TRMT2AQ8IZ69 625 aaKnown RBP15.21■□□□□ 0.03
SKA3-203ENST00000400018 CLUAP1Q96AJ1 413 aa15.21■□□□□ 0.03
SKA3-203ENST00000400018 COL5A2P05997 1499 aaPredicted RBP15.21■□□□□ 0.02
SKA3-203ENST00000400018 RTF1Q92541 710 aaKnown RBP15.21■□□□□ 0.02
SKA3-203ENST00000400018 NGLY1Q96IV0 654 aa15.21■□□□□ 0.02
SKA3-203ENST00000400018 SLC39A6Q13433 755 aa15.2■□□□□ 0.02
SKA3-203ENST00000400018 CYP27B1O15528 508 aa15.2■□□□□ 0.02
SKA3-203ENST00000400018 WDR17Q8IZU2 1322 aa15.2■□□□□ 0.02
SKA3-203ENST00000400018 PRAMEF22A3QJZ6 481 aa15.19■□□□□ 0.02
SKA3-203ENST00000400018 GNAT3A8MTJ3 354 aa15.19■□□□□ 0.02
SKA3-203ENST00000400018 PNNQ9H307 717 aaKnown RBP15.19■□□□□ 0.02
SKA3-203ENST00000400018 AHDC1Q5TGY3 1603 aaPredicted RBP15.19■□□□□ 0.02
SKA3-203ENST00000400018 CPDO75976 1380 aa15.19■□□□□ 0.02
SKA3-203ENST00000400018 PDE3BQ13370 1112 aa15.19■□□□□ 0.02
SKA3-203ENST00000400018 WDR63Q8IWG1 891 aa15.18■□□□□ 0.02
SKA3-203ENST00000400018 CCDC27Q2M243 656 aa15.17■□□□□ 0.02
SKA3-203ENST00000400018 SRCAPQ6ZRS2 3230 aa15.17■□□□□ 0.02
SKA3-203ENST00000400018 TATP17735 454 aaPredicted RBP15.17■□□□□ 0.02
SKA3-203ENST00000400018 EXOC6Q8TAG9 804 aa15.16■□□□□ 0.02
SKA3-203ENST00000400018 TSPYL4Q9UJ04 414 aa15.16■□□□□ 0.02
SKA3-203ENST00000400018 KIF24Q5T7B8 1368 aa15.16■□□□□ 0.02
SKA3-203ENST00000400018 LRP6O75581 1613 aa15.16■□□□□ 0.02
SKA3-203ENST00000400018 PIP4K2AP48426 406 aaPredicted RBP15.16■□□□□ 0.02
SKA3-203ENST00000400018 RRP1P56182 461 aaKnown RBP15.16■□□□□ 0.02
SKA3-203ENST00000400018 GAS2L2Q8NHY3 880 aa15.16■□□□□ 0.02
SKA3-203ENST00000400018 NEFLP07196 543 aa15.16■□□□□ 0.02
SKA3-203ENST00000400018 PLEKHO1Q53GL0 409 aaPredicted RBP15.16■□□□□ 0.02
SKA3-203ENST00000400018 ANXA1P04083 346 aa15.15■□□□□ 0.02
SKA3-203ENST00000400018 FAM98CQ17RN3 349 aaKnown RBP15.15■□□□□ 0.02
SKA3-203ENST00000400018 C1orf141Q5JVX7 400 aa15.15■□□□□ 0.02
SKA3-203ENST00000400018 MEX3CQ5U5Q3 659 aaKnown RBP15.15■□□□□ 0.02
SKA3-203ENST00000400018 B4GALNT3Q6L9W6 998 aa15.15■□□□□ 0.02
SKA3-203ENST00000400018 NFATC2IPQ8NCF5 419 aa15.15■□□□□ 0.02
SKA3-203ENST00000400018 PANK1Q8TE04 598 aa15.15■□□□□ 0.02
SKA3-203ENST00000400018 SSH1Q8WYL5 1049 aa15.15■□□□□ 0.02
SKA3-203ENST00000400018 MAP3K5Q99683 1374 aa15.15■□□□□ 0.02
SKA3-203ENST00000400018 MYH16Q9H6N6 1097 aa15.14■□□□□ 0.01
SKA3-203ENST00000400018 RARSP54136 660 aaKnown RBP15.14■□□□□ 0.01
SKA3-203ENST00000400018 CFAP44Q96MT7 982 aa15.14■□□□□ 0.01
SKA3-203ENST00000400018 LMO7Q8WWI1 1683 aa15.13■□□□□ 0.01
SKA3-203ENST00000400018 CRB1P82279 1406 aa15.13■□□□□ 0.01
SKA3-203ENST00000400018 ZNF853P0CG23 659 aa15.13■□□□□ 0.01
SKA3-203ENST00000400018 PHKG2P15735 406 aa15.13■□□□□ 0.01
SKA3-203ENST00000400018 SKAP1Q86WV1 359 aa15.13■□□□□ 0.01
SKA3-203ENST00000400018 FAM208AQ9UK61 1670 aaKnown RBP15.13■□□□□ 0.01
SKA3-203ENST00000400018 RNMTO43148 476 aaKnown RBP15.12■□□□□ 0.01
SKA3-203ENST00000400018 RLBP1P12271 317 aa15.12■□□□□ 0.01
SKA3-203ENST00000400018 IL2RBP14784 551 aa15.12■□□□□ 0.01
SKA3-203ENST00000400018 EIF2S2P20042 333 aaKnown RBP15.12■□□□□ 0.01
SKA3-203ENST00000400018 SYTL4Q96C24 671 aaPredicted RBP15.12■□□□□ 0.01
SKA3-203ENST00000400018 ACSBG1Q96GR2 724 aa15.12■□□□□ 0.01
SKA3-203ENST00000400018 CRBNQ96SW2 442 aa15.12■□□□□ 0.01
SKA3-203ENST00000400018 SMC4Q9NTJ3 1288 aa15.12■□□□□ 0.01
SKA3-203ENST00000400018 TWISTNBQ3B726 338 aaPredicted RBP15.11■□□□□ 0.01
SKA3-203ENST00000400018 ZCRB1Q8TBF4 217 aaKnown RBP15.11■□□□□ 0.01
SKA3-203ENST00000400018 CARD10Q9BWT7 1032 aa15.11■□□□□ 0.01
SKA3-203ENST00000400018 CANXP27824 592 aaKnown RBP15.11■□□□□ 0.01
SKA3-203ENST00000400018 TEFQ10587 303 aa15.11■□□□□ 0.01
SKA3-203ENST00000400018 AKAP4Q5JQC9 854 aa15.11■□□□□ 0.01
SKA3-203ENST00000400018 CHL1O00533 1208 aa15.1■□□□□ 0.01
SKA3-203ENST00000400018 VAMP4O75379 141 aa15.1■□□□□ 0.01
SKA3-203ENST00000400018 GNAI1P63096 354 aa15.1■□□□□ 0.01
SKA3-203ENST00000400018 PTF1AQ7RTS3 328 aa15.1■□□□□ 0.01
SKA3-203ENST00000400018 IFT57Q9NWB7 429 aa15.1■□□□□ 0.01
SKA3-203ENST00000400018 JCADQ9P266 1359 aa15.1■□□□□ 0.01
SKA3-203ENST00000400018 KDM6AO15550 1401 aaPredicted RBP15.1■□□□□ 0.01
SKA3-203ENST00000400018 BTBD11A6QL63 1104 aa15.09■□□□□ 0.01
SKA3-203ENST00000400018 USP21Q9UK80 565 aa15.09■□□□□ 0.01
SKA3-203ENST00000400018 COG6Q9Y2V7 657 aa15.09■□□□□ 0.01
SKA3-203ENST00000400018 LMOD3Q0VAK6 560 aa15.09■□□□□ 0.01
SKA3-203ENST00000400018 NOB1Q9ULX3 412 aaKnown RBP15.09■□□□□ 0.01
SKA3-203ENST00000400018 PTCD1O75127 700 aaKnown RBP15.08■□□□□ 0
SKA3-203ENST00000400018 G2E3Q7L622 706 aa15.08■□□□□ 0
SKA3-203ENST00000400018 KCNQ4P56696 695 aa15.08■□□□□ 0
SKA3-203ENST00000400018 TAF7Q15545 349 aaPredicted RBP15.08■□□□□ 0
SKA3-203ENST00000400018 SPG7Q9UQ90 795 aa15.08■□□□□ 0
SKA3-203ENST00000400018 AMOTQ4VCS5 1084 aa15.07■□□□□ 0
SKA3-203ENST00000400018 IFNL2Q8IZJ0 200 aa15.07■□□□□ 0
SKA3-203ENST00000400018 AFF2P51816 1311 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms