RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 ME1P48163 572 aa13.46□□□□□ -0.26
TTC28-201ENST00000397906 MNS1Q8NEH6 495 aa13.46□□□□□ -0.26
TTC28-201ENST00000397906 SEPT11Q9NVA2 429 aaKnown RBP13.46□□□□□ -0.26
TTC28-201ENST00000397906 FAM135AQ9P2D6 1515 aa13.46□□□□□ -0.26
TTC28-201ENST00000397906 GPTP24298 496 aa13.45□□□□□ -0.26
TTC28-201ENST00000397906 TRMT112Q9UI30 125 aaKnown RBP13.45□□□□□ -0.26
TTC28-201ENST00000397906 ATF7IPQ6VMQ6 1270 aa13.45□□□□□ -0.26
TTC28-201ENST00000397906 DZIP1Q86YF9 867 aaKnown RBP13.45□□□□□ -0.26
TTC28-201ENST00000397906 PPP6R1Q9UPN7 881 aa13.45□□□□□ -0.26
TTC28-201ENST00000397906 PRPF40AO75400 957 aaKnown RBP13.45□□□□□ -0.26
TTC28-201ENST00000397906 CAVIN1Q6NZI2 390 aaKnown RBP13.45□□□□□ -0.26
TTC28-201ENST00000397906 EXOC5O00471 708 aa13.45□□□□□ -0.26
TTC28-201ENST00000397906 RPGRIP1LQ68CZ1 1315 aa13.45□□□□□ -0.26
TTC28-201ENST00000397906 AK7Q96M32 723 aa13.45□□□□□ -0.26
TTC28-201ENST00000397906 FILIP1LQ4L180 1135 aa13.44□□□□□ -0.26
TTC28-201ENST00000397906 PHF8Q9UPP1 1060 aa13.44□□□□□ -0.26
TTC28-201ENST00000397906 MAGI1Q96QZ7 1491 aaPredicted RBP13.44□□□□□ -0.26
TTC28-201ENST00000397906 AKNAQ7Z591 1439 aa13.44□□□□□ -0.26
TTC28-201ENST00000397906 TIAM1Q13009 1591 aa13.44□□□□□ -0.26
TTC28-201ENST00000397906 ANKRD30BQ9BXX2 1392 aa13.44□□□□□ -0.26
TTC28-201ENST00000397906 PLB1Q6P1J6 1458 aa13.44□□□□□ -0.26
TTC28-201ENST00000397906 CHRNA2Q15822 529 aa13.43□□□□□ -0.26
TTC28-201ENST00000397906 ZNF622Q969S3 477 aaKnown RBP eCLIP13.43□□□□□ -0.26
TTC28-201ENST00000397906 AAMPQ13685 434 aa13.43□□□□□ -0.26
TTC28-201ENST00000397906 DUSP27Q5VZP5 1158 aa13.43□□□□□ -0.26
TTC28-201ENST00000397906 EXOC6BQ9Y2D4 811 aa13.43□□□□□ -0.26
TTC28-201ENST00000397906 PDCP20941 246 aa13.43□□□□□ -0.26
TTC28-201ENST00000397906 EMILIN1Q9Y6C2 1016 aa13.43□□□□□ -0.26
TTC28-201ENST00000397906 KRT28Q7Z3Y7 464 aa13.43□□□□□ -0.26
TTC28-201ENST00000397906 SPC24Q8NBT2 197 aa13.43□□□□□ -0.26
TTC28-201ENST00000397906 ACSBG1Q96GR2 724 aa13.42□□□□□ -0.26
TTC28-201ENST00000397906 CAMSAP2Q08AD1 1489 aa13.42□□□□□ -0.26
TTC28-201ENST00000397906 RDXP35241 583 aaKnown RBP13.42□□□□□ -0.26
TTC28-201ENST00000397906 MKNK2Q9HBH9 465 aa13.42□□□□□ -0.26
TTC28-201ENST00000397906 FCHSD2O94868 740 aa13.42□□□□□ -0.26
TTC28-201ENST00000397906 JAKMIP1Q96N16 626 aaKnown RBP13.42□□□□□ -0.26
TTC28-201ENST00000397906 CCDC141Q6ZP82 1450 aa13.42□□□□□ -0.26
TTC28-201ENST00000397906 C8orf37Q96NL8 207 aa13.42□□□□□ -0.26
TTC28-201ENST00000397906 UBAP1LF5GYI3 381 aa13.42□□□□□ -0.26
TTC28-201ENST00000397906 SERPINC1P01008 464 aa13.42□□□□□ -0.26
TTC28-201ENST00000397906 ZNF771Q7L3S4 317 aaPredicted RBP13.42□□□□□ -0.26
TTC28-201ENST00000397906 ZBTB3Q9H5J0 574 aa13.42□□□□□ -0.26
TTC28-201ENST00000397906 NFE2L2Q16236 605 aa13.42□□□□□ -0.26
TTC28-201ENST00000397906 TRMT1LQ7Z2T5 733 aaKnown RBP13.42□□□□□ -0.26
TTC28-201ENST00000397906 C6orf229H3BNL8 230 aa13.42□□□□□ -0.26
TTC28-201ENST00000397906 SMARCE1Q969G3 411 aa13.42□□□□□ -0.26
TTC28-201ENST00000397906 SEC63Q9UGP8 760 aaKnown RBP13.41□□□□□ -0.26
TTC28-201ENST00000397906 CHD1LQ86WJ1 897 aa13.41□□□□□ -0.26
TTC28-201ENST00000397906 ANKRD1Q15327 319 aa13.41□□□□□ -0.26
TTC28-201ENST00000397906 IFIT5Q13325 482 aaKnown RBP13.41□□□□□ -0.26
TTC28-201ENST00000397906 IMMTQ16891 758 aaKnown RBP13.41□□□□□ -0.26
TTC28-201ENST00000397906 NOL7Q9UMY1 257 aaKnown RBP13.41□□□□□ -0.26
TTC28-201ENST00000397906 SPDYE4A6NLX3 237 aa13.41□□□□□ -0.26
TTC28-201ENST00000397906 JMYQ8N9B5 988 aa13.41□□□□□ -0.26
TTC28-201ENST00000397906 DEF6Q9H4E7 631 aa13.41□□□□□ -0.26
TTC28-201ENST00000397906 PDRG1Q9NUG6 133 aa13.41□□□□□ -0.26
TTC28-201ENST00000397906 MVPQ14764 893 aaKnown RBP13.4□□□□□ -0.26
TTC28-201ENST00000397906 CCDC96Q2M329 555 aa13.4□□□□□ -0.26
TTC28-201ENST00000397906 DNAJC5BQ9UF47 199 aa13.4□□□□□ -0.26
TTC28-201ENST00000397906 F6X3S4 739 aa13.4□□□□□ -0.26
TTC28-201ENST00000397906 IFIT1P09914 478 aaKnown RBP13.4□□□□□ -0.26
TTC28-201ENST00000397906 RFC4P35249 363 aa13.4□□□□□ -0.26
TTC28-201ENST00000397906 LARP1BQ659C4 914 aaKnown RBP13.4□□□□□ -0.26
TTC28-201ENST00000397906 PCF11O94913 1555 aaKnown RBP13.4□□□□□ -0.26
TTC28-201ENST00000397906 WDHD1O75717 1129 aaPredicted RBP13.4□□□□□ -0.26
TTC28-201ENST00000397906 HMGXB3Q12766 1538 aa13.4□□□□□ -0.26
TTC28-201ENST00000397906 CASTP20810 708 aaKnown RBP13.4□□□□□ -0.26
TTC28-201ENST00000397906 BLOC1S2Q6QNY1 142 aa13.4□□□□□ -0.26
TTC28-201ENST00000397906 AKAP2Q9Y2D5 859 aa13.4□□□□□ -0.26
TTC28-201ENST00000397906 SMARCA5O60264 1052 aaPredicted RBP13.4□□□□□ -0.27
TTC28-201ENST00000397906 STIM1Q13586 685 aa13.4□□□□□ -0.27
TTC28-201ENST00000397906 DDX11Q96FC9 970 aa13.4□□□□□ -0.27
TTC28-201ENST00000397906 CCDC82Q8N4S0 544 aa13.39□□□□□ -0.27
TTC28-201ENST00000397906 ECM2O94769 699 aaPredicted RBP13.39□□□□□ -0.27
TTC28-201ENST00000397906 TMPOP42166 694 aaKnown RBP13.39□□□□□ -0.27
TTC28-201ENST00000397906 NAIPQ13075 1403 aa13.39□□□□□ -0.27
TTC28-201ENST00000397906 FAM13BQ9NYF5 915 aa13.39□□□□□ -0.27
TTC28-201ENST00000397906 RABEP1Q15276 862 aa13.39□□□□□ -0.27
TTC28-201ENST00000397906 DHX8Q14562 1220 aaKnown RBP13.39□□□□□ -0.27
TTC28-201ENST00000397906 WDR63Q8IWG1 891 aa13.39□□□□□ -0.27
TTC28-201ENST00000397906 CDKL5O76039 1030 aa13.39□□□□□ -0.27
TTC28-201ENST00000397906 NEBLO76041 1014 aa13.39□□□□□ -0.27
TTC28-201ENST00000397906 TMEM57Q8N5G2 664 aa13.39□□□□□ -0.27
TTC28-201ENST00000397906 LARP1Q6PKG0 1096 aaKnown RBP13.38□□□□□ -0.27
TTC28-201ENST00000397906 BOLA2Q9H3K6 86 aa13.38□□□□□ -0.27
TTC28-201ENST00000397906 NASPP49321 788 aaPredicted RBP13.38□□□□□ -0.27
TTC28-201ENST00000397906 RANBP6O60518 1105 aaKnown RBP13.38□□□□□ -0.27
TTC28-201ENST00000397906 AMOTQ4VCS5 1084 aa13.38□□□□□ -0.27
TTC28-201ENST00000397906 VSIG10Q8N0Z9 540 aa13.38□□□□□ -0.27
TTC28-201ENST00000397906 DMRT2Q9Y5R5 561 aa13.38□□□□□ -0.27
TTC28-201ENST00000397906 LIG1P18858 919 aa13.38□□□□□ -0.27
TTC28-201ENST00000397906 KIAA0586Q9BVV6 1533 aa13.38□□□□□ -0.27
TTC28-201ENST00000397906 TAF7Q15545 349 aaPredicted RBP13.38□□□□□ -0.27
TTC28-201ENST00000397906 TSPY26PQ9H489 355 aa13.38□□□□□ -0.27
TTC28-201ENST00000397906 CTNNA3Q9UI47 895 aa13.38□□□□□ -0.27
TTC28-201ENST00000397906 LRPPRCP42704 1394 aaKnown RBP13.38□□□□□ -0.27
TTC28-201ENST00000397906 PPM1FP49593 454 aaPredicted RBP13.37□□□□□ -0.27
TTC28-201ENST00000397906 HSP90AA2PQ14568 343 aaPredicted RBP13.37□□□□□ -0.27
TTC28-201ENST00000397906 CDR1P51861 262 aa13.37□□□□□ -0.27
TTC28-201ENST00000397906 TNMDQ9H2S6 317 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms