RNA–Protein interactions for RNA: ENST00000397477.2

CPSF1P1-201, Transcript of cleavage and polyadenylation specific factor 1 pseudogene 1, humanhuman

BASIC

Gene CPSF1P1, Length 3,730 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1P1-201ENST00000397477 CHL1O00533 1208 aa12.87□□□□□ -0.35
CPSF1P1-201ENST00000397477 GNAI2P04899 355 aa12.87□□□□□ -0.35
CPSF1P1-201ENST00000397477 ZNF853P0CG23 659 aa12.87□□□□□ -0.35
CPSF1P1-201ENST00000397477 CCDC30Q5VVM6 783 aa12.87□□□□□ -0.35
CPSF1P1-201ENST00000397477 ZC3H6P61129 1189 aaKnown RBP12.86□□□□□ -0.35
CPSF1P1-201ENST00000397477 FLIIQ13045 1269 aa12.86□□□□□ -0.35
CPSF1P1-201ENST00000397477 CCDC9Q9Y3X0 531 aaKnown RBP12.86□□□□□ -0.35
CPSF1P1-201ENST00000397477 INTS3Q68E01 1043 aaKnown RBP12.86□□□□□ -0.35
CPSF1P1-201ENST00000397477 CEP85Q6P2H3 762 aa12.86□□□□□ -0.35
CPSF1P1-201ENST00000397477 PLEKHM2Q8IWE5 1019 aa12.86□□□□□ -0.35
CPSF1P1-201ENST00000397477 NEURL4Q96JN8 1562 aa12.86□□□□□ -0.35
CPSF1P1-201ENST00000397477 GBP4Q96PP9 640 aa12.86□□□□□ -0.35
CPSF1P1-201ENST00000397477 TMEM131LA2VDJ0 1609 aa12.86□□□□□ -0.35
CPSF1P1-201ENST00000397477 CPS1P31327 1500 aa12.86□□□□□ -0.35
CPSF1P1-201ENST00000397477 MSH6P52701 1360 aa12.86□□□□□ -0.35
CPSF1P1-201ENST00000397477 IFT172Q9UG01 1749 aa12.86□□□□□ -0.35
CPSF1P1-201ENST00000397477 SURF6O75683 361 aaKnown RBP12.86□□□□□ -0.35
CPSF1P1-201ENST00000397477 UBTFL1P0CB47 393 aaPredicted RBP12.86□□□□□ -0.35
CPSF1P1-201ENST00000397477 PHF8Q9UPP1 1060 aa12.86□□□□□ -0.35
CPSF1P1-201ENST00000397477 CLTCQ00610 1675 aaKnown RBP12.86□□□□□ -0.35
CPSF1P1-201ENST00000397477 MYO3AQ8NEV4 1616 aa12.85□□□□□ -0.35
CPSF1P1-201ENST00000397477 LRRFIP2Q9Y608 721 aaKnown RBP12.85□□□□□ -0.35
CPSF1P1-201ENST00000397477 SHPRHQ149N8 1683 aa12.85□□□□□ -0.35
CPSF1P1-201ENST00000397477 PREX1Q8TCU6 1659 aa12.85□□□□□ -0.35
CPSF1P1-201ENST00000397477 ZNF530Q6P9A1 599 aaPredicted RBP12.85□□□□□ -0.35
CPSF1P1-201ENST00000397477 NUTM1Q86Y26 1132 aa12.85□□□□□ -0.35
CPSF1P1-201ENST00000397477 RPAP2Q8IXW5 612 aaPredicted RBP12.85□□□□□ -0.35
CPSF1P1-201ENST00000397477 CD2BP2O95400 341 aaKnown RBP12.85□□□□□ -0.35
CPSF1P1-201ENST00000397477 SDSP20132 328 aa12.85□□□□□ -0.35
CPSF1P1-201ENST00000397477 NCBP3Q53F19 620 aaKnown RBP12.85□□□□□ -0.35
CPSF1P1-201ENST00000397477 PLEKHG3A1L390 1219 aa12.84□□□□□ -0.35
CPSF1P1-201ENST00000397477 GSPT1P15170 499 aaKnown RBP12.84□□□□□ -0.35
CPSF1P1-201ENST00000397477 ANKRD44Q8N8A2 993 aa12.84□□□□□ -0.35
CPSF1P1-201ENST00000397477 PHAXQ9H814 394 aaKnown RBP12.84□□□□□ -0.35
CPSF1P1-201ENST00000397477 ATP7BP35670 1465 aa12.84□□□□□ -0.35
CPSF1P1-201ENST00000397477 A0A0G2JS52 829 aa12.84□□□□□ -0.35
CPSF1P1-201ENST00000397477 ABCC4O15439 1325 aa12.84□□□□□ -0.35
CPSF1P1-201ENST00000397477 C1orf141Q5JVX7 400 aa12.84□□□□□ -0.35
CPSF1P1-201ENST00000397477 DCTPP1Q9H773 170 aa12.84□□□□□ -0.35
CPSF1P1-201ENST00000397477 K7ELQ4 463 aaPredicted RBP12.83□□□□□ -0.36
CPSF1P1-201ENST00000397477 ANKLE2Q86XL3 938 aa12.83□□□□□ -0.36
CPSF1P1-201ENST00000397477 COL3A1P02461 1466 aaPredicted RBP12.83□□□□□ -0.36
CPSF1P1-201ENST00000397477 NLRP1Q9C000 1473 aa12.83□□□□□ -0.36
CPSF1P1-201ENST00000397477 HOXC9P31274 260 aa12.83□□□□□ -0.36
CPSF1P1-201ENST00000397477 CCT4P50991 539 aaKnown RBP12.83□□□□□ -0.36
CPSF1P1-201ENST00000397477 L1TD1Q5T7N2 865 aaKnown RBP12.83□□□□□ -0.36
CPSF1P1-201ENST00000397477 TNPO1Q92973 898 aaKnown RBP12.83□□□□□ -0.36
CPSF1P1-201ENST00000397477 SSFA2P28290 1259 aa12.83□□□□□ -0.36
CPSF1P1-201ENST00000397477 TTC22Q5TAA0 569 aa12.83□□□□□ -0.36
CPSF1P1-201ENST00000397477 DDX49Q9Y6V7 483 aaKnown RBP12.83□□□□□ -0.36
CPSF1P1-201ENST00000397477 NEK4P51957 841 aa12.82□□□□□ -0.36
CPSF1P1-201ENST00000397477 TAF7Q15545 349 aaPredicted RBP12.82□□□□□ -0.36
CPSF1P1-201ENST00000397477 MCTP1Q6DN14 999 aa12.82□□□□□ -0.36
CPSF1P1-201ENST00000397477 LGR6Q9HBX8 967 aa12.82□□□□□ -0.36
CPSF1P1-201ENST00000397477 NLRP2Q9NX02 1062 aa12.82□□□□□ -0.36
CPSF1P1-201ENST00000397477 C9orf78Q9NZ63 289 aaPredicted RBP12.82□□□□□ -0.36
CPSF1P1-201ENST00000397477 ZNF330Q9Y3S2 320 aaPredicted RBP12.82□□□□□ -0.36
CPSF1P1-201ENST00000397477 CPSF1Q10570 1443 aaKnown RBP12.82□□□□□ -0.36
CPSF1P1-201ENST00000397477 ST18O60284 1047 aa12.82□□□□□ -0.36
CPSF1P1-201ENST00000397477 ORAI2Q96SN7 254 aa12.81□□□□□ -0.36
CPSF1P1-201ENST00000397477 LARP6Q9BRS8 491 aaKnown RBP12.81□□□□□ -0.36
CPSF1P1-201ENST00000397477 LRRCC1Q9C099 1032 aa12.81□□□□□ -0.36
CPSF1P1-201ENST00000397477 TBX22Q9Y458 520 aa12.81□□□□□ -0.36
CPSF1P1-201ENST00000397477 RICTORQ6R327 1708 aa12.81□□□□□ -0.36
CPSF1P1-201ENST00000397477 FLT4P35916 1363 aa12.81□□□□□ -0.36
CPSF1P1-201ENST00000397477 DTNBO60941 627 aa12.81□□□□□ -0.36
CPSF1P1-201ENST00000397477 GNAI3P08754 354 aa12.81□□□□□ -0.36
CPSF1P1-201ENST00000397477 AATKQ6ZMQ8 1374 aa12.81□□□□□ -0.36
CPSF1P1-201ENST00000397477 SRGAP3O43295 1099 aa12.8□□□□□ -0.36
CPSF1P1-201ENST00000397477 REC8O95072 547 aa12.8□□□□□ -0.36
CPSF1P1-201ENST00000397477 KCNJ4P48050 445 aa12.8□□□□□ -0.36
CPSF1P1-201ENST00000397477 PROSER2Q86WR7 435 aaPredicted RBP12.8□□□□□ -0.36
CPSF1P1-201ENST00000397477 IL17REQ8NFR9 667 aa12.8□□□□□ -0.36
CPSF1P1-201ENST00000397477 UPF3BQ9BZI7 483 aaKnown RBP12.8□□□□□ -0.36
CPSF1P1-201ENST00000397477 ANTXR1Q9H6X2 564 aa12.8□□□□□ -0.36
CPSF1P1-201ENST00000397477 PNMA6EA0A0J9YXQ4 647 aa12.8□□□□□ -0.36
CPSF1P1-201ENST00000397477 BTBD11A6QL63 1104 aa12.8□□□□□ -0.36
CPSF1P1-201ENST00000397477 DDX11L8A8MPP1 907 aa12.8□□□□□ -0.36
CPSF1P1-201ENST00000397477 KCNQ3O43525 872 aa12.8□□□□□ -0.36
CPSF1P1-201ENST00000397477 PANK2Q9BZ23 570 aa12.8□□□□□ -0.36
CPSF1P1-201ENST00000397477 RIMBP3CA6NJZ7 1639 aa12.8□□□□□ -0.36
CPSF1P1-201ENST00000397477 RIMBP3BA6NNM3 1639 aa12.8□□□□□ -0.36
CPSF1P1-201ENST00000397477 RIMBP3Q9UFD9 1639 aa12.8□□□□□ -0.36
CPSF1P1-201ENST00000397477 TRIM44Q96DX7 344 aaPredicted RBP12.8□□□□□ -0.36
CPSF1P1-201ENST00000397477 PTPRCP08575 1304 aa12.8□□□□□ -0.36
CPSF1P1-201ENST00000397477 USP6P35125 1406 aa12.79□□□□□ -0.36
CPSF1P1-201ENST00000397477 MCCP23508 829 aa12.79□□□□□ -0.36
CPSF1P1-201ENST00000397477 DDX54Q8TDD1 881 aaKnown RBP12.79□□□□□ -0.36
CPSF1P1-201ENST00000397477 ANP32BQ92688 251 aaKnown RBP12.79□□□□□ -0.36
CPSF1P1-201ENST00000397477 TTC21AQ8NDW8 1320 aa12.79□□□□□ -0.36
CPSF1P1-201ENST00000397477 PI4KAP2A4QPH2 592 aa12.79□□□□□ -0.36
CPSF1P1-201ENST00000397477 MYL6BP14649 208 aa12.79□□□□□ -0.36
CPSF1P1-201ENST00000397477 PIP4K2AP48426 406 aaPredicted RBP12.79□□□□□ -0.36
CPSF1P1-201ENST00000397477 PI4KAP1Q8N8J0 262 aa12.79□□□□□ -0.36
CPSF1P1-201ENST00000397477 SRCIN1Q9C0H9 1055 aa12.79□□□□□ -0.36
CPSF1P1-201ENST00000397477 CHPF2Q9P2E5 772 aa12.79□□□□□ -0.36
CPSF1P1-201ENST00000397477 NBPF6Q5VWK0 638 aa12.78□□□□□ -0.36
CPSF1P1-201ENST00000397477 JARID2Q92833 1246 aaPredicted RBP12.78□□□□□ -0.36
CPSF1P1-201ENST00000397477 DDX17Q92841 729 aaKnown RBP12.78□□□□□ -0.36
CPSF1P1-201ENST00000397477 NBPF4Q96M43 638 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms