RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 CWC15Q9P013 229 aaKnown RBP8.44□□□□□ -1.06
UPF2-203ENST00000397053 PABPN1LA6NDY0 278 aaKnown RBP8.44□□□□□ -1.06
UPF2-203ENST00000397053 PSMD1Q99460 953 aa8.44□□□□□ -1.06
UPF2-203ENST00000397053 KRT85P78386 507 aa8.44□□□□□ -1.06
UPF2-203ENST00000397053 DHX8Q14562 1220 aaKnown RBP8.44□□□□□ -1.06
UPF2-203ENST00000397053 SLF2Q8IX21 1173 aa8.44□□□□□ -1.06
UPF2-203ENST00000397053 CEP57L1Q8IYX8 460 aa8.44□□□□□ -1.06
UPF2-203ENST00000397053 ZNF444Q8N0Y2 327 aaPredicted RBP8.44□□□□□ -1.06
UPF2-203ENST00000397053 RSPH6AQ9H0K4 717 aa8.44□□□□□ -1.06
UPF2-203ENST00000397053 C1orf115Q9H7X2 142 aa8.44□□□□□ -1.06
UPF2-203ENST00000397053 LIG1P18858 919 aa8.44□□□□□ -1.06
UPF2-203ENST00000397053 LARP1BQ659C4 914 aaKnown RBP8.44□□□□□ -1.06
UPF2-203ENST00000397053 TRMT1LQ7Z2T5 733 aaKnown RBP8.44□□□□□ -1.06
UPF2-203ENST00000397053 PLCD3Q8N3E9 789 aa8.44□□□□□ -1.06
UPF2-203ENST00000397053 CCDC150Q8NCX0 1101 aa8.44□□□□□ -1.06
UPF2-203ENST00000397053 MACROD2A1Z1Q3 448 aa8.43□□□□□ -1.06
UPF2-203ENST00000397053 CCDC39Q9UFE4 941 aa8.43□□□□□ -1.06
UPF2-203ENST00000397053 NASPP49321 788 aaPredicted RBP8.43□□□□□ -1.06
UPF2-203ENST00000397053 NFKBIBQ15653 356 aa8.43□□□□□ -1.06
UPF2-203ENST00000397053 CAVIN1Q6NZI2 390 aaKnown RBP8.43□□□□□ -1.06
UPF2-203ENST00000397053 AEBP1Q8IUX7 1158 aa8.43□□□□□ -1.06
UPF2-203ENST00000397053 CTCFLQ8NI51 663 aaPredicted RBP8.43□□□□□ -1.06
UPF2-203ENST00000397053 IMMTQ16891 758 aaKnown RBP8.43□□□□□ -1.06
UPF2-203ENST00000397053 POGZQ7Z3K3 1410 aa8.43□□□□□ -1.06
UPF2-203ENST00000397053 C16orf71Q8IYS4 520 aaPredicted RBP8.43□□□□□ -1.06
UPF2-203ENST00000397053 RAB34Q9BZG1 259 aa8.43□□□□□ -1.06
UPF2-203ENST00000397053 SLC52A1Q9NWF4 448 aa8.43□□□□□ -1.06
UPF2-203ENST00000397053 MPRIPQ6WCQ1 1025 aa8.43□□□□□ -1.06
UPF2-203ENST00000397053 HOOK3Q86VS8 718 aa8.43□□□□□ -1.06
UPF2-203ENST00000397053 KCNH5Q8NCM2 988 aa8.43□□□□□ -1.06
UPF2-203ENST00000397053 EHMT1Q9H9B1 1298 aa8.43□□□□□ -1.06
UPF2-203ENST00000397053 KRT32Q14532 448 aa8.42□□□□□ -1.06
UPF2-203ENST00000397053 FAM177A1Q8N128 213 aaPredicted RBP8.42□□□□□ -1.06
UPF2-203ENST00000397053 ZNF622Q969S3 477 aaKnown RBP eCLIP8.42□□□□□ -1.062e-7■■□□□ 14.3
UPF2-203ENST00000397053 GCC1Q96CN9 775 aa8.42□□□□□ -1.06
UPF2-203ENST00000397053 TNMDQ9H2S6 317 aa8.42□□□□□ -1.06
UPF2-203ENST00000397053 CABP5Q9NP86 173 aa8.42□□□□□ -1.06
UPF2-203ENST00000397053 AKAP2Q9Y2D5 859 aa8.42□□□□□ -1.06
UPF2-203ENST00000397053 PRPF40AO75400 957 aaKnown RBP8.42□□□□□ -1.06
UPF2-203ENST00000397053 KIAA0754O94854 1291 aa8.42□□□□□ -1.06
UPF2-203ENST00000397053 RRBP1Q9P2E9 1410 aaKnown RBP8.42□□□□□ -1.06
UPF2-203ENST00000397053 GSTTP1A0A1W2PQM5 241 aa8.42□□□□□ -1.06
UPF2-203ENST00000397053 EXOC5O00471 708 aa8.42□□□□□ -1.06
UPF2-203ENST00000397053 TAF3Q5VWG9 929 aa8.42□□□□□ -1.06
UPF2-203ENST00000397053 CCDC91Q7Z6B0 441 aa8.42□□□□□ -1.06
UPF2-203ENST00000397053 VPS36Q86VN1 386 aa8.42□□□□□ -1.06
UPF2-203ENST00000397053 SMARCA2P51531 1590 aa8.42□□□□□ -1.06
UPF2-203ENST00000397053 CBFA2T2O43439 604 aa8.42□□□□□ -1.06
UPF2-203ENST00000397053 MYO1BO43795 1136 aa8.42□□□□□ -1.06
UPF2-203ENST00000397053 MAP4K4O95819 1239 aaPredicted RBP8.42□□□□□ -1.06
UPF2-203ENST00000397053 CCDC192P0DO97 292 aa8.42□□□□□ -1.06
UPF2-203ENST00000397053 LEKR1Q6ZMV7 388 aa8.42□□□□□ -1.06
UPF2-203ENST00000397053 TTC16Q8NEE8 873 aa8.42□□□□□ -1.06
UPF2-203ENST00000397053 MPHOSPH6Q99547 160 aaKnown RBP8.42□□□□□ -1.06
UPF2-203ENST00000397053 NAPBQ9H115 298 aa8.42□□□□□ -1.06
UPF2-203ENST00000397053 IQCA1Q86XH1 822 aa8.41□□□□□ -1.06
UPF2-203ENST00000397053 ERLIN1O75477 346 aa8.41□□□□□ -1.06
UPF2-203ENST00000397053 IQCEQ6IPM2 695 aa8.41□□□□□ -1.06
UPF2-203ENST00000397053 TRMT112Q9UI30 125 aaKnown RBP8.41□□□□□ -1.06
UPF2-203ENST00000397053 CCDC196A0A1B0GTZ2 297 aa8.41□□□□□ -1.06
UPF2-203ENST00000397053 STAMBPO95630 424 aa8.41□□□□□ -1.06
UPF2-203ENST00000397053 HSP90AB3PQ58FF7 597 aa8.41□□□□□ -1.06
UPF2-203ENST00000397053 SLC12A5Q9H2X9 1139 aa8.41□□□□□ -1.06
UPF2-203ENST00000397053 ADAMTS8Q9UP79 889 aa8.41□□□□□ -1.06
UPF2-203ENST00000397053 CEP131Q9UPN4 1083 aa8.41□□□□□ -1.06
UPF2-203ENST00000397053 MYOM3Q5VTT5 1437 aa8.41□□□□□ -1.06
UPF2-203ENST00000397053 RANBP6O60518 1105 aaKnown RBP8.41□□□□□ -1.06
UPF2-203ENST00000397053 CTNNA2P26232 953 aa8.41□□□□□ -1.06
UPF2-203ENST00000397053 MAP3K12Q12852 859 aa8.41□□□□□ -1.06
UPF2-203ENST00000397053 KIAA1328Q86T90 577 aa8.41□□□□□ -1.06
UPF2-203ENST00000397053 TSPY26PQ9H489 355 aa8.41□□□□□ -1.06
UPF2-203ENST00000397053 IL1RAPL2Q9NP60 686 aa8.41□□□□□ -1.06
UPF2-203ENST00000397053 CFAP45Q9UL16 551 aa8.41□□□□□ -1.06
UPF2-203ENST00000397053 CETN1Q12798 172 aa8.4□□□□□ -1.06
UPF2-203ENST00000397053 SPC24Q8NBT2 197 aa8.4□□□□□ -1.06
UPF2-203ENST00000397053 SSX2IPQ9Y2D8 614 aa8.4□□□□□ -1.06
UPF2-203ENST00000397053 DMRT2Q9Y5R5 561 aa8.4□□□□□ -1.06
UPF2-203ENST00000397053 LDHCP07864 332 aa8.4□□□□□ -1.06
UPF2-203ENST00000397053 IFIT5Q13325 482 aaKnown RBP8.4□□□□□ -1.06
UPF2-203ENST00000397053 TMEM266Q2M3C6 531 aa8.4□□□□□ -1.06
UPF2-203ENST00000397053 ZNF397Q8NF99 534 aaPredicted RBP8.4□□□□□ -1.06
UPF2-203ENST00000397053 KIF20AO95235 890 aa8.4□□□□□ -1.06
UPF2-203ENST00000397053 ARHGAP29Q52LW3 1261 aa8.4□□□□□ -1.06
UPF2-203ENST00000397053 LRSAM1Q6UWE0 723 aa8.4□□□□□ -1.06
UPF2-203ENST00000397053 TSR2Q969E8 191 aaKnown RBP8.4□□□□□ -1.06
UPF2-203ENST00000397053 HOMER2Q9NSB8 354 aa8.4□□□□□ -1.06
UPF2-203ENST00000397053 MYO15BQ96JP2 1530 aa8.4□□□□□ -1.06
UPF2-203ENST00000397053 WDR33Q9C0J8 1336 aaKnown RBP8.4□□□□□ -1.07
UPF2-203ENST00000397053 CTNNBL1Q8WYA6 563 aaPredicted RBP8.4□□□□□ -1.07
UPF2-203ENST00000397053 JAKMIP1Q96N16 626 aaKnown RBP8.4□□□□□ -1.07
UPF2-203ENST00000397053 ZNF644Q9H582 1327 aaPredicted RBP8.4□□□□□ -1.07
UPF2-203ENST00000397053 FERMT2Q96AC1 680 aa8.39□□□□□ -1.07
UPF2-203ENST00000397053 TSG101Q99816 390 aa8.39□□□□□ -1.07
UPF2-203ENST00000397053 LARP1Q6PKG0 1096 aaKnown RBP8.39□□□□□ -1.07
UPF2-203ENST00000397053 CWC27Q6UX04 472 aaKnown RBP8.39□□□□□ -1.07
UPF2-203ENST00000397053 CACNA2D4Q7Z3S7 1137 aa8.39□□□□□ -1.07
UPF2-203ENST00000397053 TSHZ2Q9NRE2 1034 aa8.39□□□□□ -1.07
UPF2-203ENST00000397053 SAMM50Q9Y512 469 aa8.39□□□□□ -1.07
UPF2-203ENST00000397053 U3KPZ7 1027 aaPredicted RBP8.39□□□□□ -1.07
UPF2-203ENST00000397053 RTEL1-TNFRSF6BF6WH68 1400 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 107.7 ms