RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 SYCP1Q15431 976 aa12.06□□□□□ -0.48
LIMCH1-203ENST00000396595 CNNM1Q9NRU3 951 aa12.06□□□□□ -0.48
LIMCH1-203ENST00000396595 ATAD2Q6PL18 1390 aa12.06□□□□□ -0.48
LIMCH1-203ENST00000396595 GTF2A1P52655 376 aaPredicted RBP12.06□□□□□ -0.48
LIMCH1-203ENST00000396595 FILIP1Q7Z7B0 1213 aa12.06□□□□□ -0.48
LIMCH1-203ENST00000396595 TMEM57Q8N5G2 664 aa12.06□□□□□ -0.48
LIMCH1-203ENST00000396595 CDK19Q9BWU1 502 aa12.06□□□□□ -0.48
LIMCH1-203ENST00000396595 CABP1Q9NZU7 370 aa12.05□□□□□ -0.48
LIMCH1-203ENST00000396595 AACSQ86V21 672 aa12.05□□□□□ -0.48
LIMCH1-203ENST00000396595 OSCARQ8IYS5 282 aa12.05□□□□□ -0.48
LIMCH1-203ENST00000396595 IKQ13123 557 aaPredicted RBP12.05□□□□□ -0.48
LIMCH1-203ENST00000396595 IQCEQ6IPM2 695 aa12.05□□□□□ -0.48
LIMCH1-203ENST00000396595 SYCE3A1L190 88 aa12.05□□□□□ -0.48
LIMCH1-203ENST00000396595 CCDC69A6NI79 296 aa12.05□□□□□ -0.48
LIMCH1-203ENST00000396595 TATP17735 454 aaPredicted RBP12.04□□□□□ -0.48
LIMCH1-203ENST00000396595 SSR1P43307 286 aaKnown RBP12.04□□□□□ -0.48
LIMCH1-203ENST00000396595 TIAM1Q13009 1591 aa12.04□□□□□ -0.48
LIMCH1-203ENST00000396595 TMPOP42166 694 aaKnown RBP12.04□□□□□ -0.48
LIMCH1-203ENST00000396595 NFE2L2Q16236 605 aa12.04□□□□□ -0.48
LIMCH1-203ENST00000396595 SAMD1Q6SPF0 538 aaPredicted RBP12.04□□□□□ -0.48
LIMCH1-203ENST00000396595 SIL1Q9H173 461 aa12.04□□□□□ -0.48
LIMCH1-203ENST00000396595 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.04□□□□□ -0.48
LIMCH1-203ENST00000396595 MAP4K4O95819 1239 aaPredicted RBP12.04□□□□□ -0.48
LIMCH1-203ENST00000396595 UBXN4Q92575 508 aa12.04□□□□□ -0.48
LIMCH1-203ENST00000396595 ZHX1Q9UKY1 873 aaPredicted RBP12.04□□□□□ -0.48
LIMCH1-203ENST00000396595 GRIN2BQ13224 1484 aa12.04□□□□□ -0.48
LIMCH1-203ENST00000396595 ZNF530Q6P9A1 599 aaPredicted RBP12.04□□□□□ -0.48
LIMCH1-203ENST00000396595 CWC27Q6UX04 472 aaKnown RBP12.04□□□□□ -0.48
LIMCH1-203ENST00000396595 AQRO60306 1485 aaKnown RBP eCLIP12.03□□□□□ -0.48
LIMCH1-203ENST00000396595 PRXQ9BXM0 1461 aa12.03□□□□□ -0.48
LIMCH1-203ENST00000396595 TROQ12816 1431 aaPredicted RBP12.03□□□□□ -0.48
LIMCH1-203ENST00000396595 FAM177A1Q8N128 213 aaPredicted RBP12.03□□□□□ -0.48
LIMCH1-203ENST00000396595 PDCL3Q9H2J4 239 aa12.03□□□□□ -0.48
LIMCH1-203ENST00000396595 RPGRIP1LQ68CZ1 1315 aa12.03□□□□□ -0.48
LIMCH1-203ENST00000396595 SLC52A1Q9NWF4 448 aa12.03□□□□□ -0.48
LIMCH1-203ENST00000396595 DDX11Q96FC9 970 aa12.03□□□□□ -0.48
LIMCH1-203ENST00000396595 POLA1P09884 1462 aaPredicted RBP12.03□□□□□ -0.48
LIMCH1-203ENST00000396595 ABCC11Q96J66 1382 aa12.03□□□□□ -0.48
LIMCH1-203ENST00000396595 FAM69CQ0P6D2 419 aa12.02□□□□□ -0.48
LIMCH1-203ENST00000396595 IL1RAPL2Q9NP60 686 aa12.02□□□□□ -0.48
LIMCH1-203ENST00000396595 DAPK1P53355 1430 aa12.02□□□□□ -0.49
LIMCH1-203ENST00000396595 CCDC183Q5T5S1 534 aa12.02□□□□□ -0.49
LIMCH1-203ENST00000396595 PLEKHH1Q9ULM0 1364 aa12.02□□□□□ -0.49
LIMCH1-203ENST00000396595 WASF1Q92558 559 aa12.02□□□□□ -0.49
LIMCH1-203ENST00000396595 GBP3Q9H0R5 595 aa12.02□□□□□ -0.49
LIMCH1-203ENST00000396595 ALDH1L2Q3SY69 923 aa12.02□□□□□ -0.49
LIMCH1-203ENST00000396595 PAXIP1Q6ZW49 1069 aaPredicted RBP12.02□□□□□ -0.49
LIMCH1-203ENST00000396595 NCAPD3P42695 1498 aa12.01□□□□□ -0.49
LIMCH1-203ENST00000396595 SCAND2PQ9GZW5 306 aaPredicted RBP12.01□□□□□ -0.49
LIMCH1-203ENST00000396595 RTEL1-TNFRSF6BF6WH68 1400 aa12.01□□□□□ -0.49
LIMCH1-203ENST00000396595 EPB41L2O43491 1005 aaKnown RBP12.01□□□□□ -0.49
LIMCH1-203ENST00000396595 GLRX3O76003 335 aaKnown RBP12.01□□□□□ -0.49
LIMCH1-203ENST00000396595 CASTP20810 708 aaKnown RBP12.01□□□□□ -0.49
LIMCH1-203ENST00000396595 RARSP54136 660 aaKnown RBP12.01□□□□□ -0.49
LIMCH1-203ENST00000396595 CCDC57Q2TAC2 916 aa12.01□□□□□ -0.49
LIMCH1-203ENST00000396595 TXNDC2Q86VQ3 553 aa12.01□□□□□ -0.49
LIMCH1-203ENST00000396595 KIF1BPQ96EK5 621 aa12.01□□□□□ -0.49
LIMCH1-203ENST00000396595 CEP126Q9P2H0 1117 aa12.01□□□□□ -0.49
LIMCH1-203ENST00000396595 SFPQP23246 707 aaKnown RBP eCLIP12.01□□□□□ -0.49
LIMCH1-203ENST00000396595 CBX1P83916 185 aa12.01□□□□□ -0.49
LIMCH1-203ENST00000396595 ARHGAP29Q52LW3 1261 aa12.01□□□□□ -0.49
LIMCH1-203ENST00000396595 TMCO3Q6UWJ1 677 aa12□□□□□ -0.49
LIMCH1-203ENST00000396595 NSD3Q9BZ95 1437 aa12□□□□□ -0.49
LIMCH1-203ENST00000396595 NKTRP30414 1462 aaKnown RBP12□□□□□ -0.49
LIMCH1-203ENST00000396595 PTPN14Q15678 1187 aa12□□□□□ -0.49
LIMCH1-203ENST00000396595 TANGO6Q9C0B7 1094 aa12□□□□□ -0.49
LIMCH1-203ENST00000396595 SH2B1Q9NRF2 756 aaPredicted RBP12□□□□□ -0.49
LIMCH1-203ENST00000396595 RAB11FIP3O75154 756 aa12□□□□□ -0.49
LIMCH1-203ENST00000396595 HMGB1P09429 215 aaKnown RBP12□□□□□ -0.49
LIMCH1-203ENST00000396595 MX1P20591 662 aa12□□□□□ -0.49
LIMCH1-203ENST00000396595 SOGA3Q5TF21 947 aa12□□□□□ -0.49
LIMCH1-203ENST00000396595 NUP133Q8WUM0 1156 aa12□□□□□ -0.49
LIMCH1-203ENST00000396595 FAM177BA6PVY3 158 aa12□□□□□ -0.49
LIMCH1-203ENST00000396595 CFAP100Q494V2 611 aa12□□□□□ -0.49
LIMCH1-203ENST00000396595 ESCO1Q5FWF5 840 aa12□□□□□ -0.49
LIMCH1-203ENST00000396595 RBM42Q9BTD8 480 aaKnown RBP12□□□□□ -0.49
LIMCH1-203ENST00000396595 ANO10Q9NW15 660 aa12□□□□□ -0.49
LIMCH1-203ENST00000396595 BCCIPQ9P287 314 aaKnown RBP eCLIP12□□□□□ -0.49
LIMCH1-203ENST00000396595 EXOC6BQ9Y2D4 811 aa11.99□□□□□ -0.49
LIMCH1-203ENST00000396595 SYNJ1O43426 1573 aa11.99□□□□□ -0.49
LIMCH1-203ENST00000396595 NAIPQ13075 1403 aa11.99□□□□□ -0.49
LIMCH1-203ENST00000396595 IBSPP21815 317 aaPredicted RBP11.99□□□□□ -0.49
LIMCH1-203ENST00000396595 CABP4P57796 275 aa11.99□□□□□ -0.49
LIMCH1-203ENST00000396595 ZSCAN12O43309 604 aa11.99□□□□□ -0.49
LIMCH1-203ENST00000396595 KIF18AQ8NI77 898 aa11.99□□□□□ -0.49
LIMCH1-203ENST00000396595 CCDC102AQ96A19 550 aa11.99□□□□□ -0.49
LIMCH1-203ENST00000396595 UBAC1Q9BSL1 405 aa11.99□□□□□ -0.49
LIMCH1-203ENST00000396595 TBC1D2Q9BYX2 928 aa11.99□□□□□ -0.49
LIMCH1-203ENST00000396595 BMP2KQ9NSY1 1161 aaPredicted RBP11.99□□□□□ -0.49
LIMCH1-203ENST00000396595 FKBP4Q02790 459 aaKnown RBP eCLIP11.99□□□□□ -0.49
LIMCH1-203ENST00000396595 SPG7Q9UQ90 795 aa11.99□□□□□ -0.49
LIMCH1-203ENST00000396595 HECW1Q76N89 1606 aa11.99□□□□□ -0.49
LIMCH1-203ENST00000396595 SSH1Q8WYL5 1049 aa11.98□□□□□ -0.49
LIMCH1-203ENST00000396595 CEP131Q9UPN4 1083 aa11.98□□□□□ -0.49
LIMCH1-203ENST00000396595 CCDC83Q8IWF9 413 aa11.98□□□□□ -0.49
LIMCH1-203ENST00000396595 CNKSR2Q8WXI2 1034 aa11.98□□□□□ -0.49
LIMCH1-203ENST00000396595 FAM107BQ9H098 131 aa11.98□□□□□ -0.49
LIMCH1-203ENST00000396595 FERMT3Q86UX7 667 aa11.98□□□□□ -0.49
LIMCH1-203ENST00000396595 LRRFIP2Q9Y608 721 aaKnown RBP11.98□□□□□ -0.49
LIMCH1-203ENST00000396595 LRPPRCP42704 1394 aaKnown RBP11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 192.1 ms