RNA–Protein interactions for RNA: ENST00000394597.6

RFFL-202, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFFL, Length 4,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-202ENST00000394597 ALDH1L2Q3SY69 923 aa6.94□□□□□ -1.3
RFFL-202ENST00000394597 USHBP1Q8N6Y0 703 aa6.94□□□□□ -1.3
RFFL-202ENST00000394597 C9orf78Q9NZ63 289 aaPredicted RBP6.94□□□□□ -1.3
RFFL-202ENST00000394597 SYNMO15061 1565 aa6.94□□□□□ -1.3
RFFL-202ENST00000394597 NAP1L2Q9ULW6 460 aaPredicted RBP6.94□□□□□ -1.3
RFFL-202ENST00000394597 MVPQ14764 893 aaKnown RBP6.94□□□□□ -1.3
RFFL-202ENST00000394597 TAF7Q15545 349 aaPredicted RBP6.94□□□□□ -1.3
RFFL-202ENST00000394597 ROBO2Q9HCK4 1378 aa6.94□□□□□ -1.3
RFFL-202ENST00000394597 BCORL1Q5H9F3 1711 aa6.94□□□□□ -1.3
RFFL-202ENST00000394597 ZMYM4Q5VZL5 1548 aa6.94□□□□□ -1.3
RFFL-202ENST00000394597 HDGFL1Q5TGJ6 251 aa6.93□□□□□ -1.3
RFFL-202ENST00000394597 SSH1Q8WYL5 1049 aa6.93□□□□□ -1.3
RFFL-202ENST00000394597 VWDEQ8N2E2 1590 aa6.93□□□□□ -1.3
RFFL-202ENST00000394597 CLTCQ00610 1675 aaKnown RBP6.93□□□□□ -1.3
RFFL-202ENST00000394597 BTBD11A6QL63 1104 aa6.93□□□□□ -1.3
RFFL-202ENST00000394597 CABP4P57796 275 aa6.93□□□□□ -1.3
RFFL-202ENST00000394597 SYTL4Q96C24 671 aaPredicted RBP6.93□□□□□ -1.3
RFFL-202ENST00000394597 MIS18AQ9NYP9 233 aa6.93□□□□□ -1.3
RFFL-202ENST00000394597 FLT4P35916 1363 aa6.93□□□□□ -1.3
RFFL-202ENST00000394597 ANKRD24Q8TF21 1146 aa6.93□□□□□ -1.3
RFFL-202ENST00000394597 CHMP3Q9Y3E7 222 aa6.93□□□□□ -1.3
RFFL-202ENST00000394597 ZC3H13Q5T200 1668 aaKnown RBP6.93□□□□□ -1.3
RFFL-202ENST00000394597 CBX1P83916 185 aa6.93□□□□□ -1.3
RFFL-202ENST00000394597 MAP3K19Q56UN5 1328 aa6.93□□□□□ -1.3
RFFL-202ENST00000394597 TAF7LQ5H9L4 462 aa6.93□□□□□ -1.3
RFFL-202ENST00000394597 PLCD3Q8N3E9 789 aa6.93□□□□□ -1.3
RFFL-202ENST00000394597 ORAI2Q96SN7 254 aa6.93□□□□□ -1.3
RFFL-202ENST00000394597 ALKQ9UM73 1620 aa6.93□□□□□ -1.3
RFFL-202ENST00000394597 SETBP1Q9Y6X0 1596 aa6.93□□□□□ -1.3
RFFL-202ENST00000394597 DEPDC5O75140 1603 aa6.92□□□□□ -1.3
RFFL-202ENST00000394597 PIK3R4Q99570 1358 aa6.92□□□□□ -1.3
RFFL-202ENST00000394597 CCDC66A2RUB6 948 aa6.92□□□□□ -1.3
RFFL-202ENST00000394597 IL13P35225 146 aa6.92□□□□□ -1.3
RFFL-202ENST00000394597 GCP02774 474 aa6.92□□□□□ -1.3
RFFL-202ENST00000394597 GNAI3P08754 354 aa6.92□□□□□ -1.3
RFFL-202ENST00000394597 MCCP23508 829 aa6.92□□□□□ -1.3
RFFL-202ENST00000394597 AIMP1Q12904 312 aaKnown RBP6.92□□□□□ -1.3
RFFL-202ENST00000394597 C20orf194Q5TEA3 1177 aa6.92□□□□□ -1.3
RFFL-202ENST00000394597 MEX3CQ5U5Q3 659 aaKnown RBP6.92□□□□□ -1.3
RFFL-202ENST00000394597 RIC3Q7Z5B4 369 aa6.92□□□□□ -1.3
RFFL-202ENST00000394597 DDX54Q8TDD1 881 aaKnown RBP6.92□□□□□ -1.3
RFFL-202ENST00000394597 GPATCH3Q96I76 525 aa6.92□□□□□ -1.3
RFFL-202ENST00000394597 CGNQ9P2M7 1197 aaKnown RBP6.92□□□□□ -1.3
RFFL-202ENST00000394597 FRMPD1Q5SYB0 1578 aa6.92□□□□□ -1.3
RFFL-202ENST00000394597 ARHGEF40Q8TER5 1519 aa6.92□□□□□ -1.3
RFFL-202ENST00000394597 NPHP4O75161 1426 aaPredicted RBP6.92□□□□□ -1.3
RFFL-202ENST00000394597 FAM83GA6ND36 823 aa6.92□□□□□ -1.3
RFFL-202ENST00000394597 PIP4K2BP78356 416 aa6.92□□□□□ -1.3
RFFL-202ENST00000394597 TAF3Q5VWG9 929 aa6.92□□□□□ -1.3
RFFL-202ENST00000394597 AEBP1Q8IUX7 1158 aa6.92□□□□□ -1.3
RFFL-202ENST00000394597 LAMC1P11047 1609 aa6.91□□□□□ -1.3
RFFL-202ENST00000394597 CCT4P50991 539 aaKnown RBP6.91□□□□□ -1.3
RFFL-202ENST00000394597 IP6K1Q92551 441 aa6.91□□□□□ -1.3
RFFL-202ENST00000394597 PHACTR3Q96KR7 559 aa6.91□□□□□ -1.3
RFFL-202ENST00000394597 NUTM2BA6NNL0 878 aaPredicted RBP6.91□□□□□ -1.3
RFFL-202ENST00000394597 NUTM2EB1AL46 878 aaPredicted RBP6.91□□□□□ -1.3
RFFL-202ENST00000394597 KCNJ4P48050 445 aa6.91□□□□□ -1.3
RFFL-202ENST00000394597 NUTM2AQ8IVF1 878 aaPredicted RBP6.91□□□□□ -1.3
RFFL-202ENST00000394597 TRIM6-TRIM34B2RNG4 842 aa6.91□□□□□ -1.3
RFFL-202ENST00000394597 HTATSF1O43719 755 aaKnown RBP6.91□□□□□ -1.3
RFFL-202ENST00000394597 UBTFL1P0CB47 393 aaPredicted RBP6.91□□□□□ -1.3
RFFL-202ENST00000394597 HOXC9P31274 260 aa6.91□□□□□ -1.3
RFFL-202ENST00000394597 EYA1Q99502 592 aa6.91□□□□□ -1.3
RFFL-202ENST00000394597 MBIPQ9NS73 344 aa6.91□□□□□ -1.3
RFFL-202ENST00000394597 ATP7BP35670 1465 aa6.91□□□□□ -1.3
RFFL-202ENST00000394597 SMAP1Q8IYB5 467 aaPredicted RBP6.9□□□□□ -1.3
RFFL-202ENST00000394597 TMEM57Q8N5G2 664 aa6.9□□□□□ -1.3
RFFL-202ENST00000394597 MPRIPQ6WCQ1 1025 aa6.9□□□□□ -1.3
RFFL-202ENST00000394597 DRC7Q8IY82 874 aa6.9□□□□□ -1.3
RFFL-202ENST00000394597 BLMP54132 1417 aaPredicted RBP6.9□□□□□ -1.3
RFFL-202ENST00000394597 NEXMIFQ5QGS0 1516 aa6.9□□□□□ -1.3
RFFL-202ENST00000394597 HMGN5P82970 282 aaKnown RBP6.9□□□□□ -1.31
RFFL-202ENST00000394597 CHRNA2Q15822 529 aa6.9□□□□□ -1.31
RFFL-202ENST00000394597 PAXIP1Q6ZW49 1069 aaPredicted RBP6.9□□□□□ -1.31
RFFL-202ENST00000394597 LNPKQ9C0E8 428 aa6.9□□□□□ -1.31
RFFL-202ENST00000394597 SBNO1A3KN83 1393 aa6.9□□□□□ -1.31
RFFL-202ENST00000394597 POLR1AO95602 1720 aaPredicted RBP6.9□□□□□ -1.31
RFFL-202ENST00000394597 PRR36Q9H6K5 1346 aa6.9□□□□□ -1.31
RFFL-202ENST00000394597 HOMEZQ8IX15 550 aa6.9□□□□□ -1.31
RFFL-202ENST00000394597 SYAP1Q96A49 352 aaPredicted RBP6.9□□□□□ -1.31
RFFL-202ENST00000394597 GCC1Q96CN9 775 aa6.9□□□□□ -1.31
RFFL-202ENST00000394597 GNAI2P04899 355 aa6.89□□□□□ -1.31
RFFL-202ENST00000394597 MTHFSDQ2M296 383 aaKnown RBP6.89□□□□□ -1.31
RFFL-202ENST00000394597 HSP90AB4PQ58FF6 505 aa6.89□□□□□ -1.31
RFFL-202ENST00000394597 CCDC39Q9UFE4 941 aa6.89□□□□□ -1.31
RFFL-202ENST00000394597 PDZRN3Q9UPQ7 1066 aa6.89□□□□□ -1.31
RFFL-202ENST00000394597 GORABQ5T7V8 394 aa6.89□□□□□ -1.31
RFFL-202ENST00000394597 NEURL4Q96JN8 1562 aa6.89□□□□□ -1.31
RFFL-202ENST00000394597 PIK3C2BO00750 1634 aa6.89□□□□□ -1.31
RFFL-202ENST00000394597 NRXN1Q9ULB1 1477 aa6.89□□□□□ -1.31
RFFL-202ENST00000394597 C22orf23Q9BZE7 217 aa6.89□□□□□ -1.31
RFFL-202ENST00000394597 SRCIN1Q9C0H9 1055 aa6.89□□□□□ -1.31
RFFL-202ENST00000394597 C1orf115Q9H7X2 142 aa6.89□□□□□ -1.31
RFFL-202ENST00000394597 SPINK5Q9NQ38 1064 aaPredicted RBP6.89□□□□□ -1.31
RFFL-202ENST00000394597 RICTORQ6R327 1708 aa6.89□□□□□ -1.31
RFFL-202ENST00000394597 G3BP1Q13283 466 aaKnown RBP eCLIP6.88□□□□□ -1.31
RFFL-202ENST00000394597 IFNL2Q8IZJ0 200 aa6.88□□□□□ -1.31
RFFL-202ENST00000394597 AATKQ6ZMQ8 1374 aa6.88□□□□□ -1.31
RFFL-202ENST00000394597 CABLES1Q8TDN4 633 aa6.88□□□□□ -1.31
RFFL-202ENST00000394597 RBM42Q9BTD8 480 aaKnown RBP6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms