RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 NEUROD6Q96NK8 337 aa12.84□□□□□ -0.35
COL6A3-205ENST00000392004 SPATA31A3Q5VYP0 1347 aa12.84□□□□□ -0.35
COL6A3-205ENST00000392004 ZPR1O75312 459 aa12.84□□□□□ -0.35
COL6A3-205ENST00000392004 RRP1P56182 461 aaKnown RBP12.84□□□□□ -0.35
COL6A3-205ENST00000392004 EDC4Q6P2E9 1401 aaKnown RBP12.84□□□□□ -0.35
COL6A3-205ENST00000392004 KIF1BO60333 1816 aa12.84□□□□□ -0.35
COL6A3-205ENST00000392004 MBIPQ9NS73 344 aa12.84□□□□□ -0.35
COL6A3-205ENST00000392004 RXRBP28702 533 aa12.83□□□□□ -0.36
COL6A3-205ENST00000392004 IL13P35225 146 aa12.83□□□□□ -0.36
COL6A3-205ENST00000392004 CHMP4BQ9H444 224 aaKnown RBP12.83□□□□□ -0.36
COL6A3-205ENST00000392004 PTPRUQ92729 1446 aa12.83□□□□□ -0.36
COL6A3-205ENST00000392004 SSH1Q8WYL5 1049 aa12.83□□□□□ -0.36
COL6A3-205ENST00000392004 FMNL2Q96PY5 1086 aa12.83□□□□□ -0.36
COL6A3-205ENST00000392004 API5Q9BZZ5 524 aaKnown RBP12.82□□□□□ -0.36
COL6A3-205ENST00000392004 SPINK5Q9NQ38 1064 aaPredicted RBP12.82□□□□□ -0.36
COL6A3-205ENST00000392004 ALKQ9UM73 1620 aa12.82□□□□□ -0.36
COL6A3-205ENST00000392004 UBTFL1P0CB47 393 aaPredicted RBP12.82□□□□□ -0.36
COL6A3-205ENST00000392004 TSPYL6Q8N831 410 aa12.82□□□□□ -0.36
COL6A3-205ENST00000392004 TRPC5Q9UL62 973 aaPredicted RBP12.82□□□□□ -0.36
COL6A3-205ENST00000392004 PIK3C2BO00750 1634 aa12.81□□□□□ -0.36
COL6A3-205ENST00000392004 KCNQ3O43525 872 aa12.81□□□□□ -0.36
COL6A3-205ENST00000392004 VPS37DQ86XT2 251 aa12.81□□□□□ -0.36
COL6A3-205ENST00000392004 SEPT12Q8IYM1 358 aa12.81□□□□□ -0.36
COL6A3-205ENST00000392004 PUS7Q96PZ0 661 aaKnown RBP12.81□□□□□ -0.36
COL6A3-205ENST00000392004 ASXL1Q8IXJ9 1541 aa12.81□□□□□ -0.36
COL6A3-205ENST00000392004 C8orf58Q8NAV2 365 aa12.81□□□□□ -0.36
COL6A3-205ENST00000392004 MYD88Q99836 296 aa12.81□□□□□ -0.36
COL6A3-205ENST00000392004 EIF2AK4Q9P2K8 1649 aaKnown RBP12.8□□□□□ -0.36
COL6A3-205ENST00000392004 RWDD1Q9H446 243 aaPredicted RBP12.8□□□□□ -0.36
COL6A3-205ENST00000392004 ADGRB3O60242 1522 aa12.8□□□□□ -0.36
COL6A3-205ENST00000392004 PIK3R4Q99570 1358 aa12.8□□□□□ -0.36
COL6A3-205ENST00000392004 HMMRO75330 724 aa12.8□□□□□ -0.36
COL6A3-205ENST00000392004 RFC4P35249 363 aa12.8□□□□□ -0.36
COL6A3-205ENST00000392004 NSD2O96028 1365 aa12.8□□□□□ -0.36
COL6A3-205ENST00000392004 AKAP4Q5JQC9 854 aa12.79□□□□□ -0.36
COL6A3-205ENST00000392004 RILPL2Q969X0 211 aa12.79□□□□□ -0.36
COL6A3-205ENST00000392004 RSPH6AQ9H0K4 717 aa12.79□□□□□ -0.36
COL6A3-205ENST00000392004 CHPF2Q9P2E5 772 aa12.79□□□□□ -0.36
COL6A3-205ENST00000392004 USP6P35125 1406 aa12.79□□□□□ -0.36
COL6A3-205ENST00000392004 A1BGP04217 495 aa12.79□□□□□ -0.36
COL6A3-205ENST00000392004 LNPKQ9C0E8 428 aa12.79□□□□□ -0.36
COL6A3-205ENST00000392004 CROCC2H7BZ55 1655 aa12.79□□□□□ -0.36
COL6A3-205ENST00000392004 UNC13BO14795 1591 aa12.79□□□□□ -0.36
COL6A3-205ENST00000392004 CEP170BQ9Y4F5 1589 aaPredicted RBP12.79□□□□□ -0.36
COL6A3-205ENST00000392004 GNPATO15228 680 aa12.78□□□□□ -0.36
COL6A3-205ENST00000392004 SURF6O75683 361 aaKnown RBP12.78□□□□□ -0.36
COL6A3-205ENST00000392004 BACH2Q9BYV9 841 aa12.78□□□□□ -0.36
COL6A3-205ENST00000392004 CCNL1Q9UK58 526 aaPredicted RBP12.78□□□□□ -0.36
COL6A3-205ENST00000392004 PI4KAP2A4QPH2 592 aa12.78□□□□□ -0.36
COL6A3-205ENST00000392004 FGD1P98174 961 aa12.78□□□□□ -0.36
COL6A3-205ENST00000392004 SLFN5Q08AF3 891 aa12.78□□□□□ -0.36
COL6A3-205ENST00000392004 C20orf194Q5TEA3 1177 aa12.78□□□□□ -0.36
COL6A3-205ENST00000392004 MSL1Q68DK7 614 aa12.78□□□□□ -0.36
COL6A3-205ENST00000392004 PI4KAP1Q8N8J0 262 aa12.78□□□□□ -0.36
COL6A3-205ENST00000392004 ZMYM4Q5VZL5 1548 aa12.78□□□□□ -0.36
COL6A3-205ENST00000392004 COPS6Q7L5N1 327 aa12.78□□□□□ -0.36
COL6A3-205ENST00000392004 WDR63Q8IWG1 891 aa12.78□□□□□ -0.36
COL6A3-205ENST00000392004 RICTORQ6R327 1708 aa12.78□□□□□ -0.36
COL6A3-205ENST00000392004 MYOM2P54296 1465 aa12.78□□□□□ -0.36
COL6A3-205ENST00000392004 SBNO1A3KN83 1393 aa12.77□□□□□ -0.36
COL6A3-205ENST00000392004 SRCIN1Q9C0H9 1055 aa12.77□□□□□ -0.36
COL6A3-205ENST00000392004 KIF16BQ96L93 1317 aa12.77□□□□□ -0.36
COL6A3-205ENST00000392004 KIF13AQ9H1H9 1805 aa12.77□□□□□ -0.37
COL6A3-205ENST00000392004 SMIM5Q71RC9 77 aa12.77□□□□□ -0.37
COL6A3-205ENST00000392004 UNC5CLQ8IV45 518 aa12.77□□□□□ -0.37
COL6A3-205ENST00000392004 DNAJC10Q8IXB1 793 aa12.77□□□□□ -0.37
COL6A3-205ENST00000392004 CFAP44Q96MT7 982 aa12.77□□□□□ -0.37
COL6A3-205ENST00000392004 ASAP1Q9ULH1 1129 aa12.77□□□□□ -0.37
COL6A3-205ENST00000392004 RNMTO43148 476 aaKnown RBP12.77□□□□□ -0.37
COL6A3-205ENST00000392004 G3BP1Q13283 466 aaKnown RBP eCLIP12.77□□□□□ -0.37
COL6A3-205ENST00000392004 TRMT112Q9UI30 125 aaKnown RBP12.77□□□□□ -0.37
COL6A3-205ENST00000392004 SPHKAPQ2M3C7 1700 aa12.77□□□□□ -0.37
COL6A3-205ENST00000392004 ERBB3P21860 1342 aa12.76□□□□□ -0.37
COL6A3-205ENST00000392004 C1orf167Q5SNV9 1468 aa12.76□□□□□ -0.37
COL6A3-205ENST00000392004 XAGE3Q8WTP9 111 aa12.76□□□□□ -0.37
COL6A3-205ENST00000392004 DCAF5Q96JK2 942 aa12.76□□□□□ -0.37
COL6A3-205ENST00000392004 SNRPA1P09661 255 aaKnown RBP12.76□□□□□ -0.37
COL6A3-205ENST00000392004 FAM135BQ49AJ0 1406 aa12.76□□□□□ -0.37
COL6A3-205ENST00000392004 GSE1Q14687 1217 aa12.76□□□□□ -0.37
COL6A3-205ENST00000392004 ZNF496Q96IT1 587 aaPredicted RBP12.76□□□□□ -0.37
COL6A3-205ENST00000392004 PARD3Q8TEW0 1356 aa12.75□□□□□ -0.37
COL6A3-205ENST00000392004 FER1L4A9Z1Z3 1794 aa12.75□□□□□ -0.37
COL6A3-205ENST00000392004 CNNM1Q9NRU3 951 aa12.75□□□□□ -0.37
COL6A3-205ENST00000392004 TNNQ9UQP3 1299 aa12.75□□□□□ -0.37
COL6A3-205ENST00000392004 SBNO2Q9Y2G9 1366 aa12.75□□□□□ -0.37
COL6A3-205ENST00000392004 TOMM22Q9NS69 142 aa12.75□□□□□ -0.37
COL6A3-205ENST00000392004 SYNMO15061 1565 aa12.75□□□□□ -0.37
COL6A3-205ENST00000392004 KCNQ2O43526 872 aa12.75□□□□□ -0.37
COL6A3-205ENST00000392004 SKAP1Q86WV1 359 aa12.75□□□□□ -0.37
COL6A3-205ENST00000392004 DDX19BQ9UMR2 479 aa12.75□□□□□ -0.37
COL6A3-205ENST00000392004 SPRYD3Q8NCJ5 442 aa12.74□□□□□ -0.37
COL6A3-205ENST00000392004 IFT57Q9NWB7 429 aa12.74□□□□□ -0.37
COL6A3-205ENST00000392004 PCDH11XQ9BZA7 1347 aa12.74□□□□□ -0.37
COL6A3-205ENST00000392004 PCDH11YQ9BZA8 1340 aa12.74□□□□□ -0.37
COL6A3-205ENST00000392004 UBE3BQ7Z3V4 1068 aa12.74□□□□□ -0.37
COL6A3-205ENST00000392004 KRT27Q7Z3Y8 459 aa12.74□□□□□ -0.37
COL6A3-205ENST00000392004 TMEM57Q8N5G2 664 aa12.74□□□□□ -0.37
COL6A3-205ENST00000392004 IL17REQ8NFR9 667 aa12.74□□□□□ -0.37
COL6A3-205ENST00000392004 ZFYVE9O95405 1425 aa12.74□□□□□ -0.37
COL6A3-205ENST00000392004 A0A087WZG4 1122 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms