RNA–Protein interactions for RNA: ENST00000379989.6

CDKL5-201, Transcript of cyclin dependent kinase like 5, humanhuman

TSL 1 (best) BASIC

Gene CDKL5, Length 3,463 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5-201ENST00000379989 ARHGAP23Q9P227 1491 aa9.17□□□□□ -0.94
CDKL5-201ENST00000379989 PIK3R4Q99570 1358 aa9.17□□□□□ -0.94
CDKL5-201ENST00000379989 TERF2Q15554 542 aa9.17□□□□□ -0.94
CDKL5-201ENST00000379989 KIF20BQ96Q89 1820 aa9.17□□□□□ -0.94
CDKL5-201ENST00000379989 C3P01024 1663 aa9.17□□□□□ -0.94
CDKL5-201ENST00000379989 PLEKHG1Q9ULL1 1385 aa9.17□□□□□ -0.94
CDKL5-201ENST00000379989 ZNF521Q96K83 1311 aa9.17□□□□□ -0.94
CDKL5-201ENST00000379989 CC2D1BQ5T0F9 858 aaKnown RBP9.17□□□□□ -0.94
CDKL5-201ENST00000379989 HSCBQ8IWL3 235 aa9.17□□□□□ -0.94
CDKL5-201ENST00000379989 DDX49Q9Y6V7 483 aaKnown RBP9.17□□□□□ -0.94
CDKL5-201ENST00000379989 TRERF1Q96PN7 1200 aa9.16□□□□□ -0.94
CDKL5-201ENST00000379989 CARD10Q9BWT7 1032 aa9.16□□□□□ -0.94
CDKL5-201ENST00000379989 CIZ1Q9ULV3 898 aaPredicted RBP9.16□□□□□ -0.94
CDKL5-201ENST00000379989 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.16□□□□□ -0.94
CDKL5-201ENST00000379989 C22orf23Q9BZE7 217 aa9.16□□□□□ -0.94
CDKL5-201ENST00000379989 ZNF142P52746 1687 aaPredicted RBP9.16□□□□□ -0.94
CDKL5-201ENST00000379989 GRIPAP1Q4V328 841 aa9.15□□□□□ -0.94
CDKL5-201ENST00000379989 LRRC7Q96NW7 1537 aa9.15□□□□□ -0.94
CDKL5-201ENST00000379989 NSD3Q9BZ95 1437 aa9.15□□□□□ -0.94
CDKL5-201ENST00000379989 ZSCAN23Q3MJ62 389 aa9.15□□□□□ -0.94
CDKL5-201ENST00000379989 SMC5Q8IY18 1101 aa9.15□□□□□ -0.94
CDKL5-201ENST00000379989 STAG3Q9UJ98 1225 aa9.15□□□□□ -0.94
CDKL5-201ENST00000379989 TMEM2Q9UHN6 1383 aa9.15□□□□□ -0.94
CDKL5-201ENST00000379989 PRIM1P49642 420 aaKnown RBP9.15□□□□□ -0.95
CDKL5-201ENST00000379989 CCDC27Q2M243 656 aa9.15□□□□□ -0.95
CDKL5-201ENST00000379989 ERICH4A6NGS2 130 aa9.14□□□□□ -0.95
CDKL5-201ENST00000379989 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.14□□□□□ -0.95
CDKL5-201ENST00000379989 PIBF1Q8WXW3 757 aa9.14□□□□□ -0.95
CDKL5-201ENST00000379989 AK9Q5TCS8 1911 aa9.14□□□□□ -0.95
CDKL5-201ENST00000379989 PTMAP06454 111 aaKnown RBP9.14□□□□□ -0.95
CDKL5-201ENST00000379989 NOP2P46087 812 aaKnown RBP9.14□□□□□ -0.95
CDKL5-201ENST00000379989 HDGFL2Q7Z4V5 671 aaPredicted RBP9.14□□□□□ -0.95
CDKL5-201ENST00000379989 CTNNA3Q9UI47 895 aa9.14□□□□□ -0.95
CDKL5-201ENST00000379989 SHPRHQ149N8 1683 aa9.14□□□□□ -0.95
CDKL5-201ENST00000379989 NOLC1Q14978 699 aaKnown RBP eCLIP9.13□□□□□ -0.95
CDKL5-201ENST00000379989 DUSP27Q5VZP5 1158 aa9.13□□□□□ -0.95
CDKL5-201ENST00000379989 PTCH1Q13635 1447 aa9.13□□□□□ -0.95
CDKL5-201ENST00000379989 CT47B1P0C2W7 299 aaPredicted RBP9.13□□□□□ -0.95
CDKL5-201ENST00000379989 CT47A1Q5JQC4 288 aaPredicted RBP9.13□□□□□ -0.95
CDKL5-201ENST00000379989 CAVIN1Q6NZI2 390 aaKnown RBP9.13□□□□□ -0.95
CDKL5-201ENST00000379989 TRAK1Q9UPV9 953 aa9.13□□□□□ -0.95
CDKL5-201ENST00000379989 ITSN1Q15811 1721 aa9.13□□□□□ -0.95
CDKL5-201ENST00000379989 MON2Q7Z3U7 1717 aa9.13□□□□□ -0.95
CDKL5-201ENST00000379989 LMOD3Q0VAK6 560 aa9.12□□□□□ -0.95
CDKL5-201ENST00000379989 FKBP5Q13451 457 aaPredicted RBP9.12□□□□□ -0.95
CDKL5-201ENST00000379989 DDX41Q9UJV9 622 aaKnown RBP9.12□□□□□ -0.95
CDKL5-201ENST00000379989 AKAP12Q02952 1782 aa9.12□□□□□ -0.95
CDKL5-201ENST00000379989 CTIFO43310 598 aaKnown RBP9.12□□□□□ -0.95
CDKL5-201ENST00000379989 TRMT2AQ8IZ69 625 aaKnown RBP9.12□□□□□ -0.95
CDKL5-201ENST00000379989 BANK1Q8NDB2 785 aa9.12□□□□□ -0.95
CDKL5-201ENST00000379989 RSPH14Q9UHP6 348 aa9.12□□□□□ -0.95
CDKL5-201ENST00000379989 SSFA2P28290 1259 aa9.12□□□□□ -0.95
CDKL5-201ENST00000379989 CLEC17AQ6ZS10 378 aa9.12□□□□□ -0.95
CDKL5-201ENST00000379989 C14orf37Q86TY3 774 aa9.12□□□□□ -0.95
CDKL5-201ENST00000379989 SPINK5Q9NQ38 1064 aaPredicted RBP9.12□□□□□ -0.95
CDKL5-201ENST00000379989 EDC4Q6P2E9 1401 aaKnown RBP9.12□□□□□ -0.95
CDKL5-201ENST00000379989 GOLGA6L22H0YM25 854 aa9.11□□□□□ -0.95
CDKL5-201ENST00000379989 RIOK3O14730 519 aaKnown RBP9.11□□□□□ -0.95
CDKL5-201ENST00000379989 TNNT3P45378 269 aaPredicted RBP9.11□□□□□ -0.95
CDKL5-201ENST00000379989 MFAP1P55081 439 aaKnown RBP9.11□□□□□ -0.95
CDKL5-201ENST00000379989 MORC1Q86VD1 984 aa9.11□□□□□ -0.95
CDKL5-201ENST00000379989 C17orf53Q8N3J3 647 aaPredicted RBP9.11□□□□□ -0.95
CDKL5-201ENST00000379989 MORC2Q9Y6X9 1032 aaPredicted RBP9.11□□□□□ -0.95
CDKL5-201ENST00000379989 TOPAZ1Q8N9V7 1692 aa9.11□□□□□ -0.95
CDKL5-201ENST00000379989 RAD51AP2Q09MP3 1159 aa9.11□□□□□ -0.95
CDKL5-201ENST00000379989 EGFL6Q8IUX8 553 aa9.11□□□□□ -0.95
CDKL5-201ENST00000379989 AATKQ6ZMQ8 1374 aa9.11□□□□□ -0.95
CDKL5-201ENST00000379989 MYCBPQ99417 103 aaPredicted RBP9.11□□□□□ -0.95
CDKL5-201ENST00000379989 DHX16O60231 1041 aaKnown RBP9.1□□□□□ -0.95
CDKL5-201ENST00000379989 BAG4O95429 457 aaKnown RBP9.1□□□□□ -0.95
CDKL5-201ENST00000379989 GTF2A1P52655 376 aaPredicted RBP9.1□□□□□ -0.95
CDKL5-201ENST00000379989 BRPF1P55201 1214 aaPredicted RBP9.1□□□□□ -0.95
CDKL5-201ENST00000379989 NCAPGQ9BPX3 1015 aa9.1□□□□□ -0.95
CDKL5-201ENST00000379989 CARD14Q9BXL6 1004 aa9.1□□□□□ -0.95
CDKL5-201ENST00000379989 TMX1Q9H3N1 280 aa9.1□□□□□ -0.95
CDKL5-201ENST00000379989 IQSEC2Q5JU85 1478 aa9.1□□□□□ -0.95
CDKL5-201ENST00000379989 CPSF1Q10570 1443 aaKnown RBP9.1□□□□□ -0.95
CDKL5-201ENST00000379989 GOLGA2Q08379 1002 aa9.1□□□□□ -0.95
CDKL5-201ENST00000379989 WDR63Q8IWG1 891 aa9.1□□□□□ -0.95
CDKL5-201ENST00000379989 SNX21Q969T3 373 aa9.1□□□□□ -0.95
CDKL5-201ENST00000379989 SPTLC3Q9NUV7 552 aa9.1□□□□□ -0.95
CDKL5-201ENST00000379989 PLEKHH1Q9ULM0 1364 aa9.1□□□□□ -0.95
CDKL5-201ENST00000379989 HNRNPH2P55795 449 aaKnown RBP9.1□□□□□ -0.95
CDKL5-201ENST00000379989 NCBP1Q09161 790 aaKnown RBP9.1□□□□□ -0.95
CDKL5-201ENST00000379989 FAM43BQ6ZT52 329 aaPredicted RBP9.1□□□□□ -0.95
CDKL5-201ENST00000379989 PNPLA6Q8IY17 1366 aa9.09□□□□□ -0.95
CDKL5-201ENST00000379989 USP54Q70EL1 1684 aa9.09□□□□□ -0.95
CDKL5-201ENST00000379989 TRHP20396 242 aaPredicted RBP9.09□□□□□ -0.95
CDKL5-201ENST00000379989 RUNDC1Q96C34 613 aa9.09□□□□□ -0.95
CDKL5-201ENST00000379989 SMC4Q9NTJ3 1288 aa9.09□□□□□ -0.95
CDKL5-201ENST00000379989 NKTRP30414 1462 aaKnown RBP9.09□□□□□ -0.95
CDKL5-201ENST00000379989 CD163L1Q9NR16 1453 aa9.09□□□□□ -0.95
CDKL5-201ENST00000379989 CLUAP1Q96AJ1 413 aa9.08□□□□□ -0.96
CDKL5-201ENST00000379989 TBX22Q9Y458 520 aa9.08□□□□□ -0.96
CDKL5-201ENST00000379989 EID1Q9Y6B2 187 aa9.08□□□□□ -0.96
CDKL5-201ENST00000379989 IL16Q14005 1332 aa9.08□□□□□ -0.96
CDKL5-201ENST00000379989 ANKARQ7Z5J8 1434 aa9.08□□□□□ -0.96
CDKL5-201ENST00000379989 FOXD4L1Q9NU39 408 aa9.08□□□□□ -0.96
CDKL5-201ENST00000379989 CEP83Q9Y592 693 aa9.08□□□□□ -0.96
CDKL5-201ENST00000379989 PHF14O94880 888 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms