RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 CCDC155Q8N6L0 562 aa10.18□□□□□ -0.78
LIG3-202ENST00000378526 UPF3BQ9BZI7 483 aaKnown RBP10.18□□□□□ -0.78
LIG3-202ENST00000378526 SPATS2LQ9NUQ6 558 aaKnown RBP10.18□□□□□ -0.78
LIG3-202ENST00000378526 KIF4AO95239 1232 aa10.18□□□□□ -0.78
LIG3-202ENST00000378526 WHAMMQ8TF30 809 aa10.18□□□□□ -0.78
LIG3-202ENST00000378526 GOPCQ9HD26 462 aa10.18□□□□□ -0.78
LIG3-202ENST00000378526 ANKRD30AQ9BXX3 1397 aa10.18□□□□□ -0.78
LIG3-202ENST00000378526 TRIM21P19474 475 aaKnown RBP10.18□□□□□ -0.78
LIG3-202ENST00000378526 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.18□□□□□ -0.78
LIG3-202ENST00000378526 CAPN2P17655 700 aa10.18□□□□□ -0.78
LIG3-202ENST00000378526 CCDC114Q96M63 670 aa10.18□□□□□ -0.78
LIG3-202ENST00000378526 USO1O60763 962 aaKnown RBP10.18□□□□□ -0.78
LIG3-202ENST00000378526 NUTM1Q86Y26 1132 aa10.18□□□□□ -0.78
LIG3-202ENST00000378526 CCDC97Q96F63 343 aaPredicted RBP10.18□□□□□ -0.78
LIG3-202ENST00000378526 ATP6V1AP38606 617 aa10.17□□□□□ -0.78
LIG3-202ENST00000378526 MVPQ14764 893 aaKnown RBP10.17□□□□□ -0.78
LIG3-202ENST00000378526 RPAINQ86UA6 219 aa10.17□□□□□ -0.78
LIG3-202ENST00000378526 CRBNQ96SW2 442 aa10.17□□□□□ -0.78
LIG3-202ENST00000378526 SRRTQ9BXP5 876 aaKnown RBP10.17□□□□□ -0.78
LIG3-202ENST00000378526 CKAP4Q07065 602 aaKnown RBP10.17□□□□□ -0.78
LIG3-202ENST00000378526 SART3Q15020 963 aaKnown RBP10.17□□□□□ -0.78
LIG3-202ENST00000378526 KIF4BQ2VIQ3 1234 aa10.17□□□□□ -0.78
LIG3-202ENST00000378526 DNAI2Q9GZS0 605 aa10.17□□□□□ -0.78
LIG3-202ENST00000378526 PRR16Q569H4 304 aa10.17□□□□□ -0.78
LIG3-202ENST00000378526 STMN2Q93045 179 aa10.17□□□□□ -0.78
LIG3-202ENST00000378526 CLUAP1Q96AJ1 413 aa10.17□□□□□ -0.78
LIG3-202ENST00000378526 ALS2CR12Q96Q35 445 aa10.17□□□□□ -0.78
LIG3-202ENST00000378526 SPDYE4A6NLX3 237 aa10.17□□□□□ -0.78
LIG3-202ENST00000378526 CAVIN2O95810 425 aa10.17□□□□□ -0.78
LIG3-202ENST00000378526 MCM6Q14566 821 aa10.17□□□□□ -0.78
LIG3-202ENST00000378526 PHLDB2Q86SQ0 1253 aa10.17□□□□□ -0.78
LIG3-202ENST00000378526 RAB3IL1Q8TBN0 382 aa10.17□□□□□ -0.78
LIG3-202ENST00000378526 KANK1Q14678 1352 aa10.17□□□□□ -0.78
LIG3-202ENST00000378526 URI1O94763 535 aaPredicted RBP10.17□□□□□ -0.78
LIG3-202ENST00000378526 CEP104O60308 925 aa10.16□□□□□ -0.78
LIG3-202ENST00000378526 IFIT2P09913 472 aaKnown RBP10.16□□□□□ -0.78
LIG3-202ENST00000378526 CLCN1P35523 988 aa10.16□□□□□ -0.78
LIG3-202ENST00000378526 MAP3K11Q16584 847 aa10.16□□□□□ -0.78
LIG3-202ENST00000378526 NUP62CLQ9H1M0 184 aa10.16□□□□□ -0.78
LIG3-202ENST00000378526 MYBBP1AQ9BQG0 1328 aaKnown RBP10.16□□□□□ -0.78
LIG3-202ENST00000378526 PCK1P35558 622 aa10.16□□□□□ -0.78
LIG3-202ENST00000378526 MGEA5O60502 916 aa10.16□□□□□ -0.78
LIG3-202ENST00000378526 GMNNO75496 209 aa10.16□□□□□ -0.78
LIG3-202ENST00000378526 SEPT8Q92599 483 aa10.16□□□□□ -0.78
LIG3-202ENST00000378526 HOMER2Q9NSB8 354 aa10.16□□□□□ -0.78
LIG3-202ENST00000378526 OGFRQ9NZT2 677 aa10.16□□□□□ -0.78
LIG3-202ENST00000378526 BUB1BO60566 1050 aaPredicted RBP10.16□□□□□ -0.78
LIG3-202ENST00000378526 STK38Q15208 465 aa10.16□□□□□ -0.78
LIG3-202ENST00000378526 DDX27Q96GQ7 796 aaKnown RBP10.16□□□□□ -0.78
LIG3-202ENST00000378526 MTUS1Q9ULD2 1270 aa10.15□□□□□ -0.78
LIG3-202ENST00000378526 LUC7L3O95232 432 aaKnown RBP10.15□□□□□ -0.78
LIG3-202ENST00000378526 NBPF11Q86T75 865 aa10.15□□□□□ -0.78
LIG3-202ENST00000378526 BCL2L13Q9BXK5 485 aa10.15□□□□□ -0.78
LIG3-202ENST00000378526 LIMCH1Q9UPQ0 1083 aa10.15□□□□□ -0.78
LIG3-202ENST00000378526 DNAJC8O75937 253 aaPredicted RBP10.15□□□□□ -0.78
LIG3-202ENST00000378526 MCM4P33991 863 aa10.15□□□□□ -0.78
LIG3-202ENST00000378526 MXRA7P84157 204 aa10.15□□□□□ -0.78
LIG3-202ENST00000378526 FHAD1B1AJZ9 1412 aa10.15□□□□□ -0.78
LIG3-202ENST00000378526 RLBP1P12271 317 aa10.15□□□□□ -0.79
LIG3-202ENST00000378526 HDGFP51858 240 aaKnown RBP10.15□□□□□ -0.79
LIG3-202ENST00000378526 DIAPH1O60610 1272 aaKnown RBP10.15□□□□□ -0.79
LIG3-202ENST00000378526 RAI14Q9P0K7 980 aa10.15□□□□□ -0.79
LIG3-202ENST00000378526 FIBPO43427 364 aa10.14□□□□□ -0.79
LIG3-202ENST00000378526 GCKP35557 465 aa10.14□□□□□ -0.79
LIG3-202ENST00000378526 ARHGAP25P42331 645 aa10.14□□□□□ -0.79
LIG3-202ENST00000378526 PDE1CQ14123 709 aaPredicted RBP10.14□□□□□ -0.79
LIG3-202ENST00000378526 TRIM7Q9C029 511 aa10.14□□□□□ -0.79
LIG3-202ENST00000378526 CCNB3Q8WWL7 1395 aa10.14□□□□□ -0.79
LIG3-202ENST00000378526 CCDC27Q2M243 656 aa10.14□□□□□ -0.79
LIG3-202ENST00000378526 CCDC65Q8IXS2 484 aa10.14□□□□□ -0.79
LIG3-202ENST00000378526 TSNARE1Q96NA8 513 aa10.14□□□□□ -0.79
LIG3-202ENST00000378526 IKBKGQ9Y6K9 419 aa10.14□□□□□ -0.79
LIG3-202ENST00000378526 CEP135Q66GS9 1140 aa10.14□□□□□ -0.79
LIG3-202ENST00000378526 SETD5Q9C0A6 1442 aa10.14□□□□□ -0.79
LIG3-202ENST00000378526 CCDC40Q4G0X9 1142 aa10.14□□□□□ -0.79
LIG3-202ENST00000378526 MAATS1Q7Z4T9 603 aa10.14□□□□□ -0.79
LIG3-202ENST00000378526 CNTROBQ8N137 903 aa10.14□□□□□ -0.79
LIG3-202ENST00000378526 MAP7D1Q3KQU3 841 aa10.14□□□□□ -0.79
LIG3-202ENST00000378526 CCDC183Q5T5S1 534 aa10.14□□□□□ -0.79
LIG3-202ENST00000378526 CTAGE5O15320 804 aa10.14□□□□□ -0.79
LIG3-202ENST00000378526 CFAP100Q494V2 611 aa10.14□□□□□ -0.79
LIG3-202ENST00000378526 ZBTB12Q9Y330 459 aaPredicted RBP10.14□□□□□ -0.79
LIG3-202ENST00000378526 A0A1W2PRG0 241 aa10.13□□□□□ -0.79
LIG3-202ENST00000378526 PLEKHG5O94827 1062 aa10.13□□□□□ -0.79
LIG3-202ENST00000378526 TPD52P55327 224 aaPredicted RBP10.13□□□□□ -0.79
LIG3-202ENST00000378526 HLTFQ14527 1009 aaKnown RBP eCLIP10.13□□□□□ -0.79
LIG3-202ENST00000378526 PUS7Q96PZ0 661 aaKnown RBP10.13□□□□□ -0.79
LIG3-202ENST00000378526 FGFR1OPO95684 399 aaKnown RBP10.13□□□□□ -0.79
LIG3-202ENST00000378526 USP6NLQ92738 828 aa10.13□□□□□ -0.79
LIG3-202ENST00000378526 K7ELQ4 463 aaPredicted RBP10.13□□□□□ -0.79
LIG3-202ENST00000378526 ME1P48163 572 aa10.13□□□□□ -0.79
LIG3-202ENST00000378526 SETDB1Q15047 1291 aa10.13□□□□□ -0.79
LIG3-202ENST00000378526 CTCFLQ8NI51 663 aaPredicted RBP10.13□□□□□ -0.79
LIG3-202ENST00000378526 EIF5P55010 431 aaKnown RBP10.13□□□□□ -0.79
LIG3-202ENST00000378526 SNW1Q13573 536 aaKnown RBP10.13□□□□□ -0.79
LIG3-202ENST00000378526 GABPB1Q06547 395 aaPredicted RBP10.13□□□□□ -0.79
LIG3-202ENST00000378526 PPP1R14CQ8TAE6 165 aa10.13□□□□□ -0.79
LIG3-202ENST00000378526 MACROD2A1Z1Q3 448 aa10.13□□□□□ -0.79
LIG3-202ENST00000378526 NLRP5P59047 1200 aa10.13□□□□□ -0.79
LIG3-202ENST00000378526 CCDC178Q5BJE1 867 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms