RNA–Protein interactions for RNA: ENST00000374813.1

HLA-DOA-202, Transcript of major histocompatibility complex, class II, DO alpha, humanhuman

Gene HLA-DOA, Length 303 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOA-202ENST00000374813 ANKRD36BQ8N2N9 1353 aa13.58□□□□□ -0.24
HLA-DOA-202ENST00000374813 ANKRD24Q8TF21 1146 aa13.57□□□□□ -0.24
HLA-DOA-202ENST00000374813 EVC2Q86UK5 1308 aa13.57□□□□□ -0.24
HLA-DOA-202ENST00000374813 IGSF1Q8N6C5 1336 aa13.57□□□□□ -0.24
HLA-DOA-202ENST00000374813 LY75O60449 1722 aa13.56□□□□□ -0.24
HLA-DOA-202ENST00000374813 KIAA1210Q9ULL0 1709 aa13.56□□□□□ -0.24
HLA-DOA-202ENST00000374813 NFAT5O94916 1531 aa13.56□□□□□ -0.24
HLA-DOA-202ENST00000374813 NBPF1Q3BBV0 1214 aa13.56□□□□□ -0.24
HLA-DOA-202ENST00000374813 RBM46Q8TBY0 533 aaKnown RBP13.56□□□□□ -0.24
HLA-DOA-202ENST00000374813 C16orf71Q8IYS4 520 aaPredicted RBP13.55□□□□□ -0.24
HLA-DOA-202ENST00000374813 USP47Q96K76 1375 aa13.55□□□□□ -0.24
HLA-DOA-202ENST00000374813 FSTL1Q12841 308 aa13.54□□□□□ -0.24
HLA-DOA-202ENST00000374813 WDR90Q96KV7 1748 aa13.53□□□□□ -0.24
HLA-DOA-202ENST00000374813 KTN1Q86UP2 1357 aaKnown RBP13.52□□□□□ -0.25
HLA-DOA-202ENST00000374813 USP31Q70CQ4 1352 aa13.51□□□□□ -0.25
HLA-DOA-202ENST00000374813 ZCRB1Q8TBF4 217 aaKnown RBP13.51□□□□□ -0.25
HLA-DOA-202ENST00000374813 WWC3Q9ULE0 1092 aa13.51□□□□□ -0.25
HLA-DOA-202ENST00000374813 NSD2O96028 1365 aa13.5□□□□□ -0.25
HLA-DOA-202ENST00000374813 SLC34A2O95436 690 aa13.5□□□□□ -0.25
HLA-DOA-202ENST00000374813 NMRK2Q9NPI5 230 aa13.5□□□□□ -0.25
HLA-DOA-202ENST00000374813 HTRA3P83110 453 aa13.49□□□□□ -0.25
HLA-DOA-202ENST00000374813 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.49□□□□□ -0.25
HLA-DOA-202ENST00000374813 LTN1O94822 1766 aa13.48□□□□□ -0.25
HLA-DOA-202ENST00000374813 RAB3GAP2Q9H2M9 1393 aa13.48□□□□□ -0.25
HLA-DOA-202ENST00000374813 IP6K1Q92551 441 aa13.48□□□□□ -0.25
HLA-DOA-202ENST00000374813 AK7Q96M32 723 aa13.48□□□□□ -0.25
HLA-DOA-202ENST00000374813 NSD3Q9BZ95 1437 aa13.47□□□□□ -0.25
HLA-DOA-202ENST00000374813 TGFB2P61812 414 aa13.47□□□□□ -0.25
HLA-DOA-202ENST00000374813 ARHGAP27Q6ZUM4 889 aa13.47□□□□□ -0.25
HLA-DOA-202ENST00000374813 DOT1LQ8TEK3 1739 aa13.47□□□□□ -0.25
HLA-DOA-202ENST00000374813 CICQ96RK0 1608 aaPredicted RBP13.46□□□□□ -0.25
HLA-DOA-202ENST00000374813 C5P01031 1676 aa13.46□□□□□ -0.26
HLA-DOA-202ENST00000374813 CGNL1Q0VF96 1302 aa13.45□□□□□ -0.26
HLA-DOA-202ENST00000374813 KDM2BQ8NHM5 1336 aa13.45□□□□□ -0.26
HLA-DOA-202ENST00000374813 LTV1Q96GA3 475 aaPredicted RBP13.45□□□□□ -0.26
HLA-DOA-202ENST00000374813 PCDH10Q9P2E7 1040 aa13.45□□□□□ -0.26
HLA-DOA-202ENST00000374813 BCS1LQ9Y276 419 aa13.45□□□□□ -0.26
HLA-DOA-202ENST00000374813 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.44□□□□□ -0.26
HLA-DOA-202ENST00000374813 SSFA2P28290 1259 aa13.44□□□□□ -0.26
HLA-DOA-202ENST00000374813 NME9Q86XW9 330 aa13.44□□□□□ -0.26
HLA-DOA-202ENST00000374813 SMARCC1Q92922 1105 aaPredicted RBP13.44□□□□□ -0.26
HLA-DOA-202ENST00000374813 PLEKHG2Q9H7P9 1386 aa13.44□□□□□ -0.26
HLA-DOA-202ENST00000374813 FAM208AQ9UK61 1670 aaKnown RBP13.44□□□□□ -0.26
HLA-DOA-202ENST00000374813 TAF1LQ8IZX4 1826 aa13.43□□□□□ -0.26
HLA-DOA-202ENST00000374813 PHF14O94880 888 aa13.43□□□□□ -0.26
HLA-DOA-202ENST00000374813 HSPA1AP0DMV8 641 aaKnown RBP13.43□□□□□ -0.26
HLA-DOA-202ENST00000374813 HSPA1BP0DMV9 641 aaKnown RBP13.43□□□□□ -0.26
HLA-DOA-202ENST00000374813 SMC1BQ8NDV3 1235 aa13.43□□□□□ -0.26
HLA-DOA-202ENST00000374813 PALLDQ8WX93 1383 aa13.43□□□□□ -0.26
HLA-DOA-202ENST00000374813 C9orf131Q5VYM1 1079 aa13.42□□□□□ -0.26
HLA-DOA-202ENST00000374813 USP54Q70EL1 1684 aa13.42□□□□□ -0.26
HLA-DOA-202ENST00000374813 MPRIPQ6WCQ1 1025 aa13.41□□□□□ -0.26
HLA-DOA-202ENST00000374813 HDGFL2Q7Z4V5 671 aaPredicted RBP13.41□□□□□ -0.26
HLA-DOA-202ENST00000374813 C4BP0C0L5 1744 aa13.4□□□□□ -0.26
HLA-DOA-202ENST00000374813 MON2Q7Z3U7 1717 aa13.4□□□□□ -0.26
HLA-DOA-202ENST00000374813 A0A0G2JLW4 131 aa13.4□□□□□ -0.26
HLA-DOA-202ENST00000374813 FCHSD2O94868 740 aa13.4□□□□□ -0.26
HLA-DOA-202ENST00000374813 RAPGEF4Q8WZA2 1011 aa13.4□□□□□ -0.26
HLA-DOA-202ENST00000374813 RRAGCQ9HB90 399 aa13.4□□□□□ -0.26
HLA-DOA-202ENST00000374813 C10orf71Q711Q0 1435 aa13.39□□□□□ -0.27
HLA-DOA-202ENST00000374813 MMP10P09238 476 aa13.39□□□□□ -0.27
HLA-DOA-202ENST00000374813 AMPHP49418 695 aa13.39□□□□□ -0.27
HLA-DOA-202ENST00000374813 SBNO2Q9Y2G9 1366 aa13.39□□□□□ -0.27
HLA-DOA-202ENST00000374813 UBR3Q6ZT12 1888 aa13.39□□□□□ -0.27
HLA-DOA-202ENST00000374813 PXDNLA1KZ92 1463 aa13.38□□□□□ -0.27
HLA-DOA-202ENST00000374813 AMIGO3Q86WK7 504 aa13.38□□□□□ -0.27
HLA-DOA-202ENST00000374813 NLGN1Q8N2Q7 840 aa13.38□□□□□ -0.27
HLA-DOA-202ENST00000374813 TERF2IPQ9NYB0 399 aa13.38□□□□□ -0.27
HLA-DOA-202ENST00000374813 KIF13BQ9NQT8 1826 aa13.37□□□□□ -0.27
HLA-DOA-202ENST00000374813 TATP17735 454 aaPredicted RBP13.37□□□□□ -0.27
HLA-DOA-202ENST00000374813 HOXC9P31274 260 aa13.37□□□□□ -0.27
HLA-DOA-202ENST00000374813 TMC1Q8TDI8 760 aa13.37□□□□□ -0.27
HLA-DOA-202ENST00000374813 PCDH11XQ9BZA7 1347 aa13.37□□□□□ -0.27
HLA-DOA-202ENST00000374813 PCDH11YQ9BZA8 1340 aa13.37□□□□□ -0.27
HLA-DOA-202ENST00000374813 N4BP2Q86UW6 1770 aaPredicted RBP13.36□□□□□ -0.27
HLA-DOA-202ENST00000374813 MEGF6O75095 1541 aa13.36□□□□□ -0.27
HLA-DOA-202ENST00000374813 TMF1P82094 1093 aa13.36□□□□□ -0.27
HLA-DOA-202ENST00000374813 CCDC87Q9NVE4 849 aa13.36□□□□□ -0.27
HLA-DOA-202ENST00000374813 EDC4Q6P2E9 1401 aaKnown RBP13.36□□□□□ -0.27
HLA-DOA-202ENST00000374813 KCPQ6ZWJ8 1503 aa13.35□□□□□ -0.27
HLA-DOA-202ENST00000374813 LOC102724428A0A0B4J2F2 783 aa13.35□□□□□ -0.27
HLA-DOA-202ENST00000374813 GNPATO15228 680 aa13.35□□□□□ -0.27
HLA-DOA-202ENST00000374813 DPEP1P16444 411 aa13.35□□□□□ -0.27
HLA-DOA-202ENST00000374813 SIK1P57059 783 aa13.35□□□□□ -0.27
HLA-DOA-202ENST00000374813 NBPF6Q5VWK0 638 aa13.35□□□□□ -0.27
HLA-DOA-202ENST00000374813 SMIM5Q71RC9 77 aa13.35□□□□□ -0.27
HLA-DOA-202ENST00000374813 NBPF4Q96M43 638 aa13.35□□□□□ -0.27
HLA-DOA-202ENST00000374813 RNF181Q9P0P0 153 aa13.35□□□□□ -0.27
HLA-DOA-202ENST00000374813 PIM2Q9P1W9 311 aa13.35□□□□□ -0.27
HLA-DOA-202ENST00000374813 MAP3K19Q56UN5 1328 aa13.35□□□□□ -0.27
HLA-DOA-202ENST00000374813 VEGFAP15692 232 aaPredicted RBP13.34□□□□□ -0.27
HLA-DOA-202ENST00000374813 TRAPPC3LQ5T215 181 aa13.34□□□□□ -0.27
HLA-DOA-202ENST00000374813 COG3Q96JB2 828 aa13.34□□□□□ -0.27
HLA-DOA-202ENST00000374813 DALRD3Q5D0E6 543 aaKnown RBP13.33□□□□□ -0.28
HLA-DOA-202ENST00000374813 LINC00116Q8NCU8 138 aa13.33□□□□□ -0.28
HLA-DOA-202ENST00000374813 PIGBQ92521 554 aa13.33□□□□□ -0.28
HLA-DOA-202ENST00000374813 SLC12A5Q9H2X9 1139 aa13.33□□□□□ -0.28
HLA-DOA-202ENST00000374813 PARP3Q9Y6F1 533 aa13.33□□□□□ -0.28
HLA-DOA-202ENST00000374813 TNRC6CQ9HCJ0 1690 aaKnown RBP13.33□□□□□ -0.28
HLA-DOA-202ENST00000374813 ZC3H4Q9UPT8 1303 aaKnown RBP13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms