RNA–Protein interactions for RNA: ENST00000374199.8

PRPF4-202, Transcript of pre-mRNA processing factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PRPF4, Length 3,212 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF4-202ENST00000374199 SOS1Q07889 1333 aaPredicted RBP16.16■□□□□ 0.18
PRPF4-202ENST00000374199 SCN11AQ9UI33 1791 aa16.16■□□□□ 0.18
PRPF4-202ENST00000374199 FAM83GA6ND36 823 aa16.16■□□□□ 0.18
PRPF4-202ENST00000374199 DZIP1LQ8IYY4 767 aaKnown RBP16.16■□□□□ 0.18
PRPF4-202ENST00000374199 THUMPD2Q9BTF0 503 aaKnown RBP16.16■□□□□ 0.18
PRPF4-202ENST00000374199 IGHDP01880 384 aa16.15■□□□□ 0.18
PRPF4-202ENST00000374199 TSPYL6Q8N831 410 aa16.15■□□□□ 0.18
PRPF4-202ENST00000374199 GAS2L2Q8NHY3 880 aa16.15■□□□□ 0.18
PRPF4-202ENST00000374199 RBM33Q96EV2 1170 aaKnown RBP16.15■□□□□ 0.18
PRPF4-202ENST00000374199 COG6Q9Y2V7 657 aa16.15■□□□□ 0.18
PRPF4-202ENST00000374199 CPDO75976 1380 aa16.14■□□□□ 0.18
PRPF4-202ENST00000374199 MAP3K5Q99683 1374 aa16.14■□□□□ 0.18
PRPF4-202ENST00000374199 AMPHP49418 695 aa16.14■□□□□ 0.17
PRPF4-202ENST00000374199 SMC4Q9NTJ3 1288 aa16.14■□□□□ 0.17
PRPF4-202ENST00000374199 PSME1Q06323 249 aa16.14■□□□□ 0.17
PRPF4-202ENST00000374199 NOB1Q9ULX3 412 aaKnown RBP16.14■□□□□ 0.17
PRPF4-202ENST00000374199 HDAC1Q13547 482 aaPredicted RBP16.13■□□□□ 0.17
PRPF4-202ENST00000374199 C8orf58Q8NAV2 365 aa16.13■□□□□ 0.17
PRPF4-202ENST00000374199 PCDHB15Q9Y5E8 787 aa16.13■□□□□ 0.17
PRPF4-202ENST00000374199 MRC1P22897 1456 aa16.13■□□□□ 0.17
PRPF4-202ENST00000374199 ZBTB40Q9NUA8 1239 aa16.13■□□□□ 0.17
PRPF4-202ENST00000374199 GCP02774 474 aa16.12■□□□□ 0.17
PRPF4-202ENST00000374199 BACH2Q9BYV9 841 aa16.12■□□□□ 0.17
PRPF4-202ENST00000374199 COL22A1Q8NFW1 1626 aaPredicted RBP16.11■□□□□ 0.17
PRPF4-202ENST00000374199 IPO8O15397 1037 aaKnown RBP16.11■□□□□ 0.17
PRPF4-202ENST00000374199 BCL2L13Q9BXK5 485 aa16.11■□□□□ 0.17
PRPF4-202ENST00000374199 DDX19BQ9UMR2 479 aa16.11■□□□□ 0.17
PRPF4-202ENST00000374199 SHANK3Q9BYB0 1731 aa16.11■□□□□ 0.17
PRPF4-202ENST00000374199 TWISTNBQ3B726 338 aaPredicted RBP16.11■□□□□ 0.17
PRPF4-202ENST00000374199 KRT28Q7Z3Y7 464 aa16.11■□□□□ 0.17
PRPF4-202ENST00000374199 CADPS2Q86UW7 1296 aa16.11■□□□□ 0.17
PRPF4-202ENST00000374199 PXDNLA1KZ92 1463 aa16.1■□□□□ 0.17
PRPF4-202ENST00000374199 GLI3P10071 1580 aa16.1■□□□□ 0.17
PRPF4-202ENST00000374199 DCTN1Q14203 1278 aa16.09■□□□□ 0.17
PRPF4-202ENST00000374199 FRAT1Q92837 279 aaPredicted RBP16.09■□□□□ 0.17
PRPF4-202ENST00000374199 FOXO3O43524 673 aa16.09■□□□□ 0.17
PRPF4-202ENST00000374199 NBPF6Q5VWK0 638 aa16.09■□□□□ 0.17
PRPF4-202ENST00000374199 NBPF4Q96M43 638 aa16.09■□□□□ 0.17
PRPF4-202ENST00000374199 MCM10Q7L590 875 aa16.08■□□□□ 0.17
PRPF4-202ENST00000374199 HEG1Q9ULI3 1381 aa16.08■□□□□ 0.16
PRPF4-202ENST00000374199 HAP1P54257 671 aaPredicted RBP16.08■□□□□ 0.16
PRPF4-202ENST00000374199 PAPPAQ13219 1627 aa16.08■□□□□ 0.16
PRPF4-202ENST00000374199 SPATA31A3Q5VYP0 1347 aa16.08■□□□□ 0.16
PRPF4-202ENST00000374199 TMEM57Q8N5G2 664 aa16.07■□□□□ 0.16
PRPF4-202ENST00000374199 GNAT3A8MTJ3 354 aa16.07■□□□□ 0.16
PRPF4-202ENST00000374199 NUTM2GQ5VZR2 741 aa16.07■□□□□ 0.16
PRPF4-202ENST00000374199 NPHP3Q7Z494 1330 aa16.07■□□□□ 0.16
PRPF4-202ENST00000374199 ZBTB7BO15156 539 aaPredicted RBP16.07■□□□□ 0.16
PRPF4-202ENST00000374199 PAK3O75914 559 aaPredicted RBP16.07■□□□□ 0.16
PRPF4-202ENST00000374199 SOS2Q07890 1332 aaPredicted RBP16.07■□□□□ 0.16
PRPF4-202ENST00000374199 CANXP27824 592 aaKnown RBP16.06■□□□□ 0.16
PRPF4-202ENST00000374199 IL17REQ8NFR9 667 aa16.06■□□□□ 0.16
PRPF4-202ENST00000374199 PTPRCP08575 1304 aa16.06■□□□□ 0.16
PRPF4-202ENST00000374199 PDE4AP27815 886 aa16.06■□□□□ 0.16
PRPF4-202ENST00000374199 INTS3Q68E01 1043 aaKnown RBP16.06■□□□□ 0.16
PRPF4-202ENST00000374199 ERBB3P21860 1342 aa16.05■□□□□ 0.16
PRPF4-202ENST00000374199 ATF3P18847 181 aa16.05■□□□□ 0.16
PRPF4-202ENST00000374199 AHDC1Q5TGY3 1603 aaPredicted RBP16.05■□□□□ 0.16
PRPF4-202ENST00000374199 C8orf34Q49A92 452 aa16.05■□□□□ 0.16
PRPF4-202ENST00000374199 SMC5Q8IY18 1101 aa16.05■□□□□ 0.16
PRPF4-202ENST00000374199 UBR2Q8IWV8 1755 aa16.04■□□□□ 0.16
PRPF4-202ENST00000374199 PLCH1Q4KWH8 1693 aa16.04■□□□□ 0.16
PRPF4-202ENST00000374199 HSPA2P54652 639 aa16.04■□□□□ 0.16
PRPF4-202ENST00000374199 AXIN2Q9Y2T1 843 aa16.04■□□□□ 0.16
PRPF4-202ENST00000374199 ATP10DQ9P241 1426 aa16.04■□□□□ 0.16
PRPF4-202ENST00000374199 FTSJ3Q8IY81 847 aaKnown RBP16.03■□□□□ 0.16
PRPF4-202ENST00000374199 LTBP4Q8N2S1 1624 aa16.03■□□□□ 0.16
PRPF4-202ENST00000374199 TUBGCP6Q96RT7 1819 aa16.03■□□□□ 0.16
PRPF4-202ENST00000374199 WNK3Q9BYP7 1800 aa16.03■□□□□ 0.16
PRPF4-202ENST00000374199 C5P01031 1676 aa16.02■□□□□ 0.16
PRPF4-202ENST00000374199 IBTKQ9P2D0 1353 aaPredicted RBP16.02■□□□□ 0.16
PRPF4-202ENST00000374199 SOX12O15370 315 aa16.02■□□□□ 0.16
PRPF4-202ENST00000374199 BRINP3Q76B58 766 aa16.02■□□□□ 0.16
PRPF4-202ENST00000374199 API5Q9BZZ5 524 aaKnown RBP16.02■□□□□ 0.16
PRPF4-202ENST00000374199 RWDD1Q9H446 243 aaPredicted RBP16.02■□□□□ 0.16
PRPF4-202ENST00000374199 LAMB4A4D0S4 1761 aa16.02■□□□□ 0.16
PRPF4-202ENST00000374199 C14orf37Q86TY3 774 aa16.02■□□□□ 0.15
PRPF4-202ENST00000374199 AMOTQ4VCS5 1084 aa16.01■□□□□ 0.15
PRPF4-202ENST00000374199 MSH5O43196 834 aa16.01■□□□□ 0.15
PRPF4-202ENST00000374199 HOXB7P09629 217 aa16.01■□□□□ 0.15
PRPF4-202ENST00000374199 AKAP4Q5JQC9 854 aa16.01■□□□□ 0.15
PRPF4-202ENST00000374199 SKAP1Q86WV1 359 aa16.01■□□□□ 0.15
PRPF4-202ENST00000374199 CHMP4BQ9H444 224 aaKnown RBP16.01■□□□□ 0.15
PRPF4-202ENST00000374199 MEGF6O75095 1541 aa16■□□□□ 0.15
PRPF4-202ENST00000374199 LAS1LQ9Y4W2 734 aaKnown RBP16■□□□□ 0.15
PRPF4-202ENST00000374199 ANKRD24Q8TF21 1146 aa16■□□□□ 0.15
PRPF4-202ENST00000374199 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.99■□□□□ 0.152e-6■■■■□ 19.7
PRPF4-202ENST00000374199 TAF7Q15545 349 aaPredicted RBP15.99■□□□□ 0.15
PRPF4-202ENST00000374199 KRT24Q2M2I5 525 aa15.99■□□□□ 0.15
PRPF4-202ENST00000374199 RTF1Q92541 710 aaKnown RBP15.99■□□□□ 0.15
PRPF4-202ENST00000374199 FAM161AQ3B820 660 aa15.98■□□□□ 0.15
PRPF4-202ENST00000374199 KDM6AO15550 1401 aaPredicted RBP15.98■□□□□ 0.15
PRPF4-202ENST00000374199 ITPRIPQ8IWB1 547 aa15.98■□□□□ 0.15
PRPF4-202ENST00000374199 XPCQ01831 940 aaPredicted RBP15.97■□□□□ 0.15
PRPF4-202ENST00000374199 COL16A1Q07092 1604 aaPredicted RBP15.97■□□□□ 0.15
PRPF4-202ENST00000374199 ZNF335Q9H4Z2 1342 aaPredicted RBP15.97■□□□□ 0.15
PRPF4-202ENST00000374199 TSPYL4Q9UJ04 414 aa15.97■□□□□ 0.15
PRPF4-202ENST00000374199 COL5A2P05997 1499 aaPredicted RBP15.97■□□□□ 0.15
PRPF4-202ENST00000374199 SIRT2Q8IXJ6 389 aa15.96■□□□□ 0.15
PRPF4-202ENST00000374199 LRRC59Q96AG4 307 aaKnown RBP15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms