RNA–Protein interactions for RNA: ENST00000373779.7

PTPRU-202, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-202ENST00000373779 UPF3BQ9BZI7 483 aaKnown RBP20.77■□□□□ 0.92
PTPRU-202ENST00000373779 WASHC4Q2M389 1173 aa20.77■□□□□ 0.92
PTPRU-202ENST00000373779 TTC22Q5TAA0 569 aa20.77■□□□□ 0.92
PTPRU-202ENST00000373779 GPS2Q13227 327 aa20.77■□□□□ 0.91
PTPRU-202ENST00000373779 KLHL40Q2TBA0 621 aa20.77■□□□□ 0.91
PTPRU-202ENST00000373779 TSR1Q2NL82 804 aaKnown RBP20.76■□□□□ 0.91
PTPRU-202ENST00000373779 PTPRCP08575 1304 aa20.76■□□□□ 0.91
PTPRU-202ENST00000373779 SNX21Q969T3 373 aa20.76■□□□□ 0.91
PTPRU-202ENST00000373779 STK3Q13188 491 aa20.75■□□□□ 0.91
PTPRU-202ENST00000373779 MNS1Q8NEH6 495 aa20.75■□□□□ 0.91
PTPRU-202ENST00000373779 KDM6BO15054 1643 aa20.75■□□□□ 0.91
PTPRU-202ENST00000373779 ZNF396Q96N95 335 aaPredicted RBP20.75■□□□□ 0.91
PTPRU-202ENST00000373779 BCL11BQ9C0K0 894 aaPredicted RBP20.75■□□□□ 0.91
PTPRU-202ENST00000373779 ARGLU1Q9NWB6 273 aaPredicted RBP20.75■□□□□ 0.91
PTPRU-202ENST00000373779 GNAT3A8MTJ3 354 aa20.75■□□□□ 0.91
PTPRU-202ENST00000373779 AACSQ86V21 672 aa20.75■□□□□ 0.91
PTPRU-202ENST00000373779 NLRP2Q9NX02 1062 aa20.75■□□□□ 0.91
PTPRU-202ENST00000373779 NPC1L1Q9UHC9 1359 aa20.74■□□□□ 0.91
PTPRU-202ENST00000373779 ADGBQ8N7X0 1667 aa20.74■□□□□ 0.91
PTPRU-202ENST00000373779 TEX35Q5T0J7 233 aa20.74■□□□□ 0.91
PTPRU-202ENST00000373779 BLOC1S2Q6QNY1 142 aa20.74■□□□□ 0.91
PTPRU-202ENST00000373779 PBRM1Q86U86 1689 aa20.74■□□□□ 0.91
PTPRU-202ENST00000373779 CASTP20810 708 aaKnown RBP20.74■□□□□ 0.91
PTPRU-202ENST00000373779 CEBPZQ03701 1054 aaKnown RBP20.74■□□□□ 0.91
PTPRU-202ENST00000373779 F6X3S4 739 aa20.73■□□□□ 0.91
PTPRU-202ENST00000373779 RAB11FIP3O75154 756 aa20.73■□□□□ 0.91
PTPRU-202ENST00000373779 KIF1BPQ96EK5 621 aa20.73■□□□□ 0.91
PTPRU-202ENST00000373779 A0A0U1RQG5 324 aaPredicted RBP20.73■□□□□ 0.91
PTPRU-202ENST00000373779 SIL1Q9H173 461 aa20.73■□□□□ 0.91
PTPRU-202ENST00000373779 NUP62CLQ9H1M0 184 aa20.73■□□□□ 0.91
PTPRU-202ENST00000373779 ZNF530Q6P9A1 599 aaPredicted RBP20.72■□□□□ 0.91
PTPRU-202ENST00000373779 PRKCSHP14314 528 aaPredicted RBP20.72■□□□□ 0.91
PTPRU-202ENST00000373779 PANK2Q9BZ23 570 aa20.72■□□□□ 0.91
PTPRU-202ENST00000373779 SAFBQ15424 915 aaKnown RBP eCLIP20.72■□□□□ 0.91
PTPRU-202ENST00000373779 PPP6R1Q9UPN7 881 aa20.72■□□□□ 0.91
PTPRU-202ENST00000373779 CLCN1P35523 988 aa20.72■□□□□ 0.91
PTPRU-202ENST00000373779 OLFM4Q6UX06 510 aa20.72■□□□□ 0.91
PTPRU-202ENST00000373779 SPATA32Q96LK8 384 aa20.72■□□□□ 0.91
PTPRU-202ENST00000373779 TRAPPC8Q9Y2L5 1435 aa20.71■□□□□ 0.91
PTPRU-202ENST00000373779 WASLO00401 505 aaPredicted RBP20.71■□□□□ 0.91
PTPRU-202ENST00000373779 FYB1O15117 783 aa20.71■□□□□ 0.91
PTPRU-202ENST00000373779 CCDC183Q5T5S1 534 aa20.71■□□□□ 0.91
PTPRU-202ENST00000373779 SMC2O95347 1197 aa20.71■□□□□ 0.91
PTPRU-202ENST00000373779 PDIA4P13667 645 aaKnown RBP20.7■□□□□ 0.9
PTPRU-202ENST00000373779 PKNOX2Q96KN3 472 aa20.7■□□□□ 0.9
PTPRU-202ENST00000373779 ANKRD20A12PQ8NF67 263 aa20.7■□□□□ 0.9
PTPRU-202ENST00000373779 NOC3LQ8WTT2 800 aaKnown RBP20.7■□□□□ 0.9
PTPRU-202ENST00000373779 FAM83GA6ND36 823 aa20.69■□□□□ 0.9
PTPRU-202ENST00000373779 XPCQ01831 940 aaPredicted RBP20.69■□□□□ 0.9
PTPRU-202ENST00000373779 SMC5Q8IY18 1101 aa20.69■□□□□ 0.9
PTPRU-202ENST00000373779 MRPL50Q8N5N7 158 aaKnown RBP20.69■□□□□ 0.9
PTPRU-202ENST00000373779 ERICH2A1L162 156 aa20.69■□□□□ 0.9
PTPRU-202ENST00000373779 GLRX3O76003 335 aaKnown RBP20.69■□□□□ 0.9
PTPRU-202ENST00000373779 KDM5CP41229 1560 aa20.69■□□□□ 0.9
PTPRU-202ENST00000373779 CCDC83Q8IWF9 413 aa20.69■□□□□ 0.9
PTPRU-202ENST00000373779 STK38Q15208 465 aa20.68■□□□□ 0.9
PTPRU-202ENST00000373779 ZSCAN23Q3MJ62 389 aa20.68■□□□□ 0.9
PTPRU-202ENST00000373779 ESCO1Q5FWF5 840 aa20.68■□□□□ 0.9
PTPRU-202ENST00000373779 MAST1Q9Y2H9 1570 aa20.68■□□□□ 0.9
PTPRU-202ENST00000373779 DHX16O60231 1041 aaKnown RBP20.67■□□□□ 0.9
PTPRU-202ENST00000373779 MAP3K11Q16584 847 aa20.67■□□□□ 0.9
PTPRU-202ENST00000373779 ZBTB40Q9NUA8 1239 aa20.67■□□□□ 0.9
PTPRU-202ENST00000373779 LRRFIP2Q9Y608 721 aaKnown RBP20.67■□□□□ 0.9
PTPRU-202ENST00000373779 BTBD11A6QL63 1104 aa20.67■□□□□ 0.9
PTPRU-202ENST00000373779 GTF2E1P29083 439 aaPredicted RBP20.67■□□□□ 0.9
PTPRU-202ENST00000373779 EVA1CP58658 441 aa20.67■□□□□ 0.9
PTPRU-202ENST00000373779 CCDC112Q8NEF3 446 aa20.67■□□□□ 0.9
PTPRU-202ENST00000373779 FMNL2Q96PY5 1086 aa20.67■□□□□ 0.9
PTPRU-202ENST00000373779 SLC26A8Q96RN1 970 aa20.67■□□□□ 0.9
PTPRU-202ENST00000373779 RBM27Q9P2N5 1060 aaKnown RBP20.67■□□□□ 0.9
PTPRU-202ENST00000373779 PUS7Q96PZ0 661 aaKnown RBP20.66■□□□□ 0.9
PTPRU-202ENST00000373779 SDSP20132 328 aa20.66■□□□□ 0.9
PTPRU-202ENST00000373779 RAB3GAP1Q15042 981 aa20.66■□□□□ 0.9
PTPRU-202ENST00000373779 PRPF40BQ6NWY9 871 aaKnown RBP20.66■□□□□ 0.9
PTPRU-202ENST00000373779 KRT32Q14532 448 aa20.65■□□□□ 0.9
PTPRU-202ENST00000373779 ME1P48163 572 aa20.65■□□□□ 0.9
PTPRU-202ENST00000373779 CFAP45Q9UL16 551 aa20.65■□□□□ 0.9
PTPRU-202ENST00000373779 FBXO31Q5XUX0 539 aaPredicted RBP20.65■□□□□ 0.9
PTPRU-202ENST00000373779 PDILTQ8N807 584 aa20.64■□□□□ 0.9
PTPRU-202ENST00000373779 FBLN1P23142 703 aa20.64■□□□□ 0.9
PTPRU-202ENST00000373779 CCDC70Q6NSX1 233 aa20.64■□□□□ 0.89
PTPRU-202ENST00000373779 LIMCH1Q9UPQ0 1083 aa20.64■□□□□ 0.89
PTPRU-202ENST00000373779 CCP110O43303 1012 aa20.64■□□□□ 0.89
PTPRU-202ENST00000373779 IPO7O95373 1038 aaKnown RBP20.64■□□□□ 0.89
PTPRU-202ENST00000373779 MCM5P33992 734 aa20.64■□□□□ 0.89
PTPRU-202ENST00000373779 FLIIQ13045 1269 aa20.64■□□□□ 0.89
PTPRU-202ENST00000373779 TAF7Q15545 349 aaPredicted RBP20.64■□□□□ 0.89
PTPRU-202ENST00000373779 RBM42Q9BTD8 480 aaKnown RBP20.64■□□□□ 0.89
PTPRU-202ENST00000373779 SH2B1Q9NRF2 756 aaPredicted RBP20.64■□□□□ 0.89
PTPRU-202ENST00000373779 DMRT2Q9Y5R5 561 aa20.64■□□□□ 0.89
PTPRU-202ENST00000373779 ANKRD44Q8N8A2 993 aa20.63■□□□□ 0.89
PTPRU-202ENST00000373779 FERMT3Q86UX7 667 aa20.63■□□□□ 0.89
PTPRU-202ENST00000373779 GDPD2Q9HCC8 539 aa20.62■□□□□ 0.89
PTPRU-202ENST00000373779 USP25Q9UHP3 1055 aa20.62■□□□□ 0.89
PTPRU-202ENST00000373779 EIF4G3O43432 1585 aaKnown RBP20.62■□□□□ 0.89
PTPRU-202ENST00000373779 CAMK4Q16566 473 aa20.62■□□□□ 0.89
PTPRU-202ENST00000373779 TMX3Q96JJ7 454 aa20.62■□□□□ 0.89
PTPRU-202ENST00000373779 MYL6BP14649 208 aa20.61■□□□□ 0.89
PTPRU-202ENST00000373779 LRSAM1Q6UWE0 723 aa20.61■□□□□ 0.89
PTPRU-202ENST00000373779 TTC21BQ7Z4L5 1316 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms