RNA–Protein interactions for RNA: ENST00000372246.7

ATG4A-204, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4A, Length 2,501 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-204ENST00000372246 DDX19BQ9UMR2 479 aa6.71□□□□□ -1.34
ATG4A-204ENST00000372246 POLR3AO14802 1390 aaPredicted RBP6.71□□□□□ -1.34
ATG4A-204ENST00000372246 CDC42BPBQ9Y5S2 1711 aa6.7□□□□□ -1.34
ATG4A-204ENST00000372246 DOK7Q18PE1 504 aa6.7□□□□□ -1.34
ATG4A-204ENST00000372246 SNX21Q969T3 373 aa6.7□□□□□ -1.34
ATG4A-204ENST00000372246 CARMIL2Q6F5E8 1435 aa6.7□□□□□ -1.34
ATG4A-204ENST00000372246 IQSEC2Q5JU85 1478 aa6.7□□□□□ -1.34
ATG4A-204ENST00000372246 SHPRHQ149N8 1683 aa6.7□□□□□ -1.34
ATG4A-204ENST00000372246 PPIP5K1Q6PFW1 1433 aa6.7□□□□□ -1.34
ATG4A-204ENST00000372246 ATP10AO60312 1499 aa6.7□□□□□ -1.34
ATG4A-204ENST00000372246 CBX1P83916 185 aa6.7□□□□□ -1.34
ATG4A-204ENST00000372246 CALD1Q05682 793 aaKnown RBP6.7□□□□□ -1.34
ATG4A-204ENST00000372246 DCTN1Q14203 1278 aa6.7□□□□□ -1.34
ATG4A-204ENST00000372246 TTC37Q6PGP7 1564 aa6.7□□□□□ -1.34
ATG4A-204ENST00000372246 FAM83GA6ND36 823 aa6.69□□□□□ -1.34
ATG4A-204ENST00000372246 KLHL40Q2TBA0 621 aa6.69□□□□□ -1.34
ATG4A-204ENST00000372246 PLEKHF1Q96S99 279 aa6.69□□□□□ -1.34
ATG4A-204ENST00000372246 IQGAP1P46940 1657 aa6.69□□□□□ -1.34
ATG4A-204ENST00000372246 RNF17Q9BXT8 1623 aaKnown RBP6.69□□□□□ -1.34
ATG4A-204ENST00000372246 NINLQ9Y2I6 1382 aa6.69□□□□□ -1.34
ATG4A-204ENST00000372246 HOXB1P14653 301 aaPredicted RBP6.69□□□□□ -1.34
ATG4A-204ENST00000372246 ANP32BQ92688 251 aaKnown RBP6.69□□□□□ -1.34
ATG4A-204ENST00000372246 PHACTR3Q96KR7 559 aa6.69□□□□□ -1.34
ATG4A-204ENST00000372246 CEP152O94986 1710 aa6.68□□□□□ -1.34
ATG4A-204ENST00000372246 PTPRTO14522 1441 aa6.68□□□□□ -1.34
ATG4A-204ENST00000372246 NUP160Q12769 1436 aa6.68□□□□□ -1.34
ATG4A-204ENST00000372246 ZBTB7BO15156 539 aaPredicted RBP6.68□□□□□ -1.34
ATG4A-204ENST00000372246 CFAP53Q96M91 514 aa6.68□□□□□ -1.34
ATG4A-204ENST00000372246 MRC2Q9UBG0 1479 aa6.68□□□□□ -1.34
ATG4A-204ENST00000372246 CLTCL1P53675 1640 aa6.68□□□□□ -1.34
ATG4A-204ENST00000372246 EIF2AK4Q9P2K8 1649 aaKnown RBP6.68□□□□□ -1.34
ATG4A-204ENST00000372246 GADD45BO75293 160 aaPredicted RBP6.68□□□□□ -1.34
ATG4A-204ENST00000372246 PLCB2Q00722 1185 aa6.68□□□□□ -1.34
ATG4A-204ENST00000372246 BMP2KLQ5H9B9 411 aa6.68□□□□□ -1.34
ATG4A-204ENST00000372246 GPR153Q6NV75 609 aa6.68□□□□□ -1.34
ATG4A-204ENST00000372246 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.68□□□□□ -1.34
ATG4A-204ENST00000372246 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.68□□□□□ -1.34
ATG4A-204ENST00000372246 TTC12Q9H892 705 aaPredicted RBP6.68□□□□□ -1.34
ATG4A-204ENST00000372246 NPC1L1Q9UHC9 1359 aa6.67□□□□□ -1.34
ATG4A-204ENST00000372246 POTEB3A0JP26 581 aa6.67□□□□□ -1.34
ATG4A-204ENST00000372246 SKOR2Q2VWA4 1001 aaPredicted RBP6.67□□□□□ -1.34
ATG4A-204ENST00000372246 DNTTIP2Q5QJE6 756 aaKnown RBP6.67□□□□□ -1.34
ATG4A-204ENST00000372246 POTEBQ6S5H4 581 aa6.67□□□□□ -1.34
ATG4A-204ENST00000372246 ZNF710Q8N1W2 664 aa6.67□□□□□ -1.34
ATG4A-204ENST00000372246 TMC2Q8TDI7 906 aa6.67□□□□□ -1.34
ATG4A-204ENST00000372246 CHMP4AQ9BY43 222 aa6.67□□□□□ -1.34
ATG4A-204ENST00000372246 NOL7Q9UMY1 257 aaKnown RBP6.67□□□□□ -1.34
ATG4A-204ENST00000372246 ZNF518AQ6AHZ1 1483 aa6.67□□□□□ -1.34
ATG4A-204ENST00000372246 LAMC1P11047 1609 aa6.67□□□□□ -1.34
ATG4A-204ENST00000372246 PLXNC1O60486 1568 aa6.67□□□□□ -1.34
ATG4A-204ENST00000372246 SPAG9O60271 1321 aaKnown RBP6.67□□□□□ -1.34
ATG4A-204ENST00000372246 KIF16BQ96L93 1317 aa6.67□□□□□ -1.34
ATG4A-204ENST00000372246 GOLGA6L22H0YM25 854 aa6.67□□□□□ -1.34
ATG4A-204ENST00000372246 PTMAP06454 111 aaKnown RBP6.67□□□□□ -1.34
ATG4A-204ENST00000372246 PLEKHM2Q8IWE5 1019 aa6.67□□□□□ -1.34
ATG4A-204ENST00000372246 GPHNQ9NQX3 736 aaPredicted RBP6.67□□□□□ -1.34
ATG4A-204ENST00000372246 PCDH10Q9P2E7 1040 aa6.67□□□□□ -1.34
ATG4A-204ENST00000372246 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.67□□□□□ -1.34
ATG4A-204ENST00000372246 NOS1P29475 1434 aa6.66□□□□□ -1.34
ATG4A-204ENST00000372246 ARHGEF5Q12774 1597 aa6.66□□□□□ -1.34
ATG4A-204ENST00000372246 KDM5AP29375 1690 aaKnown RBP6.66□□□□□ -1.34
ATG4A-204ENST00000372246 PRKAR2BP31323 418 aa6.66□□□□□ -1.34
ATG4A-204ENST00000372246 EMP3P54852 163 aa6.66□□□□□ -1.34
ATG4A-204ENST00000372246 SRPK2P78362 688 aaKnown RBP6.66□□□□□ -1.34
ATG4A-204ENST00000372246 ATP2B3Q16720 1220 aa6.66□□□□□ -1.34
ATG4A-204ENST00000372246 C8orf58Q8NAV2 365 aa6.66□□□□□ -1.34
ATG4A-204ENST00000372246 BBXQ8WY36 941 aaPredicted RBP6.66□□□□□ -1.34
ATG4A-204ENST00000372246 ZSWIM6Q9HCJ5 1215 aa6.66□□□□□ -1.34
ATG4A-204ENST00000372246 ZKSCAN5Q9Y2L8 839 aa6.66□□□□□ -1.34
ATG4A-204ENST00000372246 UNC13BO14795 1591 aa6.66□□□□□ -1.34
ATG4A-204ENST00000372246 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.66□□□□□ -1.34
ATG4A-204ENST00000372246 MINK1Q8N4C8 1332 aaPredicted RBP6.66□□□□□ -1.34
ATG4A-204ENST00000372246 IQGAP3Q86VI3 1631 aa6.66□□□□□ -1.34
ATG4A-204ENST00000372246 MAST1Q9Y2H9 1570 aa6.65□□□□□ -1.34
ATG4A-204ENST00000372246 IFT140Q96RY7 1462 aa6.65□□□□□ -1.34
ATG4A-204ENST00000372246 SDSP20132 328 aa6.65□□□□□ -1.34
ATG4A-204ENST00000372246 ZNF445P59923 1031 aa6.65□□□□□ -1.34
ATG4A-204ENST00000372246 FOXK1P85037 733 aa6.65□□□□□ -1.34
ATG4A-204ENST00000372246 GGT6Q6P531 493 aa6.65□□□□□ -1.34
ATG4A-204ENST00000372246 CDAN1Q8IWY9 1227 aa6.65□□□□□ -1.34
ATG4A-204ENST00000372246 PDLIM2Q96JY6 352 aa6.65□□□□□ -1.34
ATG4A-204ENST00000372246 USP26Q9BXU7 913 aa6.65□□□□□ -1.34
ATG4A-204ENST00000372246 UPF3BQ9BZI7 483 aaKnown RBP6.65□□□□□ -1.34
ATG4A-204ENST00000372246 CRISPLD2Q9H0B8 497 aa6.65□□□□□ -1.34
ATG4A-204ENST00000372246 USP25Q9UHP3 1055 aa6.65□□□□□ -1.34
ATG4A-204ENST00000372246 SCAPERQ9BY12 1400 aa6.65□□□□□ -1.35
ATG4A-204ENST00000372246 RIMBP2O15034 1052 aa6.65□□□□□ -1.35
ATG4A-204ENST00000372246 CDC45O75419 566 aa6.65□□□□□ -1.35
ATG4A-204ENST00000372246 CYP2E1P05181 493 aaPredicted RBP6.65□□□□□ -1.35
ATG4A-204ENST00000372246 CCDC27Q2M243 656 aa6.65□□□□□ -1.35
ATG4A-204ENST00000372246 PALD1Q9ULE6 856 aa6.65□□□□□ -1.35
ATG4A-204ENST00000372246 NCKAP5LQ9HCH0 1330 aa6.64□□□□□ -1.35
ATG4A-204ENST00000372246 VAMP4O75379 141 aa6.64□□□□□ -1.35
ATG4A-204ENST00000372246 SLC34A2O95436 690 aa6.64□□□□□ -1.35
ATG4A-204ENST00000372246 NEK4P51957 841 aa6.64□□□□□ -1.35
ATG4A-204ENST00000372246 MIS18AQ9NYP9 233 aa6.64□□□□□ -1.35
ATG4A-204ENST00000372246 CFAP65Q6ZU64 1925 aaKnown RBP6.64□□□□□ -1.35
ATG4A-204ENST00000372246 PREX2Q70Z35 1606 aa6.64□□□□□ -1.35
ATG4A-204ENST00000372246 ABCA6Q8N139 1617 aa6.64□□□□□ -1.35
ATG4A-204ENST00000372246 FYB1O15117 783 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms