RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 FEZ1Q99689 392 aa10.23□□□□□ -0.77
SYNE1-206ENST00000367253 CALCOCO1Q9P1Z2 691 aa10.23□□□□□ -0.77
SYNE1-206ENST00000367253 TRAF1Q13077 416 aa10.23□□□□□ -0.77
SYNE1-206ENST00000367253 CERS3Q8IU89 383 aa10.23□□□□□ -0.77
SYNE1-206ENST00000367253 ATP10BO94823 1461 aa10.23□□□□□ -0.77
SYNE1-206ENST00000367253 ERC1Q8IUD2 1116 aa10.23□□□□□ -0.77
SYNE1-206ENST00000367253 CHMP4BP1P59074 171 aa10.22□□□□□ -0.77
SYNE1-206ENST00000367253 GOLGA6L10A0A0M3HER8 536 aa10.22□□□□□ -0.77
SYNE1-206ENST00000367253 GOLGA6L10A6NI86 522 aa10.22□□□□□ -0.77
SYNE1-206ENST00000367253 KIF14Q15058 1648 aa10.22□□□□□ -0.77
SYNE1-206ENST00000367253 C6orf229H3BNL8 230 aa10.22□□□□□ -0.77
SYNE1-206ENST00000367253 TNNI2P48788 182 aa10.22□□□□□ -0.77
SYNE1-206ENST00000367253 CABP5Q9NP86 173 aa10.22□□□□□ -0.77
SYNE1-206ENST00000367253 ZNF219Q9P2Y4 722 aaPredicted RBP10.22□□□□□ -0.77
SYNE1-206ENST00000367253 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.21□□□□□ -0.77
SYNE1-206ENST00000367253 HOOK1Q9UJC3 728 aaKnown RBP10.21□□□□□ -0.77
SYNE1-206ENST00000367253 DAPK1P53355 1430 aa10.21□□□□□ -0.77
SYNE1-206ENST00000367253 LEKR1Q6ZMV7 388 aa10.21□□□□□ -0.78
SYNE1-206ENST00000367253 EYA3Q99504 573 aa10.21□□□□□ -0.78
SYNE1-206ENST00000367253 CCDC87Q9NVE4 849 aa10.21□□□□□ -0.78
SYNE1-206ENST00000367253 C9orf84Q5VXU9 1444 aa10.21□□□□□ -0.78
SYNE1-206ENST00000367253 RALBP1Q15311 655 aa10.21□□□□□ -0.78
SYNE1-206ENST00000367253 ERCC4Q92889 916 aaPredicted RBP10.21□□□□□ -0.78
SYNE1-206ENST00000367253 NEUROD6Q96NK8 337 aa10.21□□□□□ -0.78
SYNE1-206ENST00000367253 ANKIB1Q9P2G1 1089 aa10.21□□□□□ -0.78
SYNE1-206ENST00000367253 CCDC152Q4G0S7 254 aa10.2□□□□□ -0.78
SYNE1-206ENST00000367253 PPP4R3BQ5MIZ7 849 aa10.2□□□□□ -0.78
SYNE1-206ENST00000367253 RBM26Q5T8P6 1007 aaKnown RBP10.2□□□□□ -0.78
SYNE1-206ENST00000367253 RNF20Q5VTR2 975 aa10.2□□□□□ -0.78
SYNE1-206ENST00000367253 ITPRIPQ8IWB1 547 aa10.2□□□□□ -0.78
SYNE1-206ENST00000367253 FAM184AQ8NB25 1140 aa10.2□□□□□ -0.78
SYNE1-206ENST00000367253 LDHCP07864 332 aa10.2□□□□□ -0.78
SYNE1-206ENST00000367253 NOD1Q9Y239 953 aa10.2□□□□□ -0.78
SYNE1-206ENST00000367253 CEP170Q5SW79 1584 aa10.2□□□□□ -0.78
SYNE1-206ENST00000367253 ST20-MTHFSA0A0A6YYL1 179 aa10.2□□□□□ -0.78
SYNE1-206ENST00000367253 MTHFSP49914 203 aa10.2□□□□□ -0.78
SYNE1-206ENST00000367253 ENOX2Q16206 610 aaKnown RBP10.2□□□□□ -0.78
SYNE1-206ENST00000367253 DDB1Q16531 1140 aa10.2□□□□□ -0.78
SYNE1-206ENST00000367253 ZSCAN25Q6NSZ9 544 aa10.2□□□□□ -0.78
SYNE1-206ENST00000367253 TSPYL4Q9UJ04 414 aa10.2□□□□□ -0.78
SYNE1-206ENST00000367253 CD109Q6YHK3 1445 aa10.2□□□□□ -0.78
SYNE1-206ENST00000367253 FOSBP53539 338 aa10.2□□□□□ -0.78
SYNE1-206ENST00000367253 CAVIN4Q5BKX8 364 aa10.2□□□□□ -0.78
SYNE1-206ENST00000367253 DDX46Q7L014 1031 aaKnown RBP10.2□□□□□ -0.78
SYNE1-206ENST00000367253 FERMT2Q96AC1 680 aa10.2□□□□□ -0.78
SYNE1-206ENST00000367253 ZC3H6P61129 1189 aaKnown RBP10.2□□□□□ -0.78
SYNE1-206ENST00000367253 ZRSR2Q15696 482 aaKnown RBP10.2□□□□□ -0.78
SYNE1-206ENST00000367253 CCDC158Q5M9N0 1113 aa10.2□□□□□ -0.78
SYNE1-206ENST00000367253 SOGA3Q5TF21 947 aa10.2□□□□□ -0.78
SYNE1-206ENST00000367253 CENPJQ9HC77 1338 aaPredicted RBP10.19□□□□□ -0.78
SYNE1-206ENST00000367253 CFAP43Q8NDM7 1665 aa10.19□□□□□ -0.78
SYNE1-206ENST00000367253 ZNF530Q6P9A1 599 aaPredicted RBP10.19□□□□□ -0.78
SYNE1-206ENST00000367253 TEX2Q8IWB9 1127 aa10.19□□□□□ -0.78
SYNE1-206ENST00000367253 TIGD1Q96MW7 591 aa10.19□□□□□ -0.78
SYNE1-206ENST00000367253 ARHGEF11O15085 1522 aa10.19□□□□□ -0.78
SYNE1-206ENST00000367253 AIMP1Q12904 312 aaKnown RBP10.19□□□□□ -0.78
SYNE1-206ENST00000367253 SPC25Q9HBM1 224 aa10.19□□□□□ -0.78
SYNE1-206ENST00000367253 SLC5A4Q9NY91 659 aa10.19□□□□□ -0.78
SYNE1-206ENST00000367253 PTPN23Q9H3S7 1636 aa10.19□□□□□ -0.78
SYNE1-206ENST00000367253 RAPGEF3O95398 923 aa10.19□□□□□ -0.78
SYNE1-206ENST00000367253 CBX1P83916 185 aa10.19□□□□□ -0.78
SYNE1-206ENST00000367253 NOC2LQ9Y3T9 749 aaKnown RBP10.19□□□□□ -0.78
SYNE1-206ENST00000367253 FOXD4L5Q5VV16 416 aaPredicted RBP10.18□□□□□ -0.78
SYNE1-206ENST00000367253 FOXD4L4Q8WXT5 416 aaPredicted RBP10.18□□□□□ -0.78
SYNE1-206ENST00000367253 IFT57Q9NWB7 429 aa10.18□□□□□ -0.78
SYNE1-206ENST00000367253 NAIPQ13075 1403 aa10.18□□□□□ -0.78
SYNE1-206ENST00000367253 ZKSCAN1P17029 563 aaPredicted RBP10.18□□□□□ -0.78
SYNE1-206ENST00000367253 ERC2O15083 957 aa10.18□□□□□ -0.78
SYNE1-206ENST00000367253 KIF4AO95239 1232 aa10.18□□□□□ -0.78
SYNE1-206ENST00000367253 FKBP5Q13451 457 aaPredicted RBP10.18□□□□□ -0.78
SYNE1-206ENST00000367253 ELMSAN1Q6PJG2 1045 aa10.18□□□□□ -0.78
SYNE1-206ENST00000367253 CCDC141Q6ZP82 1450 aa10.18□□□□□ -0.78
SYNE1-206ENST00000367253 MRE11P49959 708 aa10.18□□□□□ -0.78
SYNE1-206ENST00000367253 AFAP1Q8N556 730 aa10.18□□□□□ -0.78
SYNE1-206ENST00000367253 SUPT20HQ8NEM7 779 aa10.18□□□□□ -0.78
SYNE1-206ENST00000367253 PDE4AP27815 886 aa10.17□□□□□ -0.78
SYNE1-206ENST00000367253 TTLL5Q6EMB2 1281 aa10.17□□□□□ -0.78
SYNE1-206ENST00000367253 L3MBTL2Q969R5 705 aa10.17□□□□□ -0.78
SYNE1-206ENST00000367253 PHF8Q9UPP1 1060 aa10.17□□□□□ -0.78
SYNE1-206ENST00000367253 GPATCH8Q9UKJ3 1502 aaKnown RBP10.17□□□□□ -0.78
SYNE1-206ENST00000367253 RPGRIP1LQ68CZ1 1315 aa10.17□□□□□ -0.78
SYNE1-206ENST00000367253 ZNF76P36508 570 aa10.17□□□□□ -0.78
SYNE1-206ENST00000367253 CCDC57Q2TAC2 916 aa10.17□□□□□ -0.78
SYNE1-206ENST00000367253 FAM161AQ3B820 660 aa10.17□□□□□ -0.78
SYNE1-206ENST00000367253 CCDC117Q8IWD4 279 aaPredicted RBP10.17□□□□□ -0.78
SYNE1-206ENST00000367253 CDK5RAP3Q96JB5 506 aa10.17□□□□□ -0.78
SYNE1-206ENST00000367253 API5Q9BZZ5 524 aaKnown RBP10.17□□□□□ -0.78
SYNE1-206ENST00000367253 TRPC5Q9UL62 973 aaPredicted RBP10.17□□□□□ -0.78
SYNE1-206ENST00000367253 DNAJC5Q9H3Z4 198 aa10.17□□□□□ -0.78
SYNE1-206ENST00000367253 GLRX3O76003 335 aaKnown RBP10.17□□□□□ -0.78
SYNE1-206ENST00000367253 CCDC39Q9UFE4 941 aa10.17□□□□□ -0.78
SYNE1-206ENST00000367253 FOXD4L6Q3SYB3 417 aaPredicted RBP10.16□□□□□ -0.78
SYNE1-206ENST00000367253 FOXD4L3Q6VB84 417 aaPredicted RBP10.16□□□□□ -0.78
SYNE1-206ENST00000367253 ZNF408Q9H9D4 720 aa10.16□□□□□ -0.78
SYNE1-206ENST00000367253 CAMSAP2Q08AD1 1489 aa10.16□□□□□ -0.78
SYNE1-206ENST00000367253 ABCC2Q92887 1545 aa10.16□□□□□ -0.78
SYNE1-206ENST00000367253 H3BQV1 296 aa10.16□□□□□ -0.78
SYNE1-206ENST00000367253 ZFYVE27Q5T4F4 411 aa10.16□□□□□ -0.78
SYNE1-206ENST00000367253 IFFO2Q5TF58 517 aa10.16□□□□□ -0.78
SYNE1-206ENST00000367253 TNPO1Q92973 898 aaKnown RBP10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms