RNA–Protein interactions for RNA: ENST00000360264.7

CUX1-203, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CUX1, Length 13,762 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-203ENST00000360264 GGNBP2Q9H3C7 697 aa11.33□□□□□ -0.6
CUX1-203ENST00000360264 ATAD2BQ9ULI0 1458 aa11.33□□□□□ -0.6
CUX1-203ENST00000360264 PANK1Q8TE04 598 aa11.33□□□□□ -0.6
CUX1-203ENST00000360264 GRIPAP1Q4V328 841 aa11.33□□□□□ -0.6
CUX1-203ENST00000360264 SLC4A2P04920 1241 aa11.33□□□□□ -0.6
CUX1-203ENST00000360264 LARP1BQ659C4 914 aaKnown RBP11.33□□□□□ -0.6
CUX1-203ENST00000360264 PROSER2Q86WR7 435 aaPredicted RBP11.33□□□□□ -0.6
CUX1-203ENST00000360264 SYNJ2O15056 1496 aa11.33□□□□□ -0.6
CUX1-203ENST00000360264 HOOK3Q86VS8 718 aa11.32□□□□□ -0.6
CUX1-203ENST00000360264 CAVIN4Q5BKX8 364 aa11.32□□□□□ -0.6
CUX1-203ENST00000360264 NUTM2GQ5VZR2 741 aa11.32□□□□□ -0.6
CUX1-203ENST00000360264 CENPHQ9H3R5 247 aa11.32□□□□□ -0.6
CUX1-203ENST00000360264 SPA17Q15506 151 aa11.32□□□□□ -0.6
CUX1-203ENST00000360264 HSP90AB3PQ58FF7 597 aa11.32□□□□□ -0.6
CUX1-203ENST00000360264 PPM1EQ8WY54 764 aa11.32□□□□□ -0.6
CUX1-203ENST00000360264 TSG101Q99816 390 aa11.32□□□□□ -0.6
CUX1-203ENST00000360264 SPATA32Q96LK8 384 aa11.32□□□□□ -0.6
CUX1-203ENST00000360264 PRKAR2BP31323 418 aa11.32□□□□□ -0.6
CUX1-203ENST00000360264 TCP11L2Q8N4U5 519 aa11.32□□□□□ -0.6
CUX1-203ENST00000360264 CCDC97Q96F63 343 aaPredicted RBP11.32□□□□□ -0.6
CUX1-203ENST00000360264 FMNL2Q96PY5 1086 aa11.32□□□□□ -0.6
CUX1-203ENST00000360264 SSR1P43307 286 aaKnown RBP11.32□□□□□ -0.6
CUX1-203ENST00000360264 EIF5P55010 431 aaKnown RBP11.32□□□□□ -0.6
CUX1-203ENST00000360264 GIGYF2Q6Y7W6 1299 aaKnown RBP11.32□□□□□ -0.6
CUX1-203ENST00000360264 LRP2BPQ9P2M1 347 aa11.32□□□□□ -0.6
CUX1-203ENST00000360264 ARHGAP29Q52LW3 1261 aa11.31□□□□□ -0.6
CUX1-203ENST00000360264 KCNH5Q8NCM2 988 aa11.31□□□□□ -0.6
CUX1-203ENST00000360264 RNF214Q8ND24 703 aa11.31□□□□□ -0.6
CUX1-203ENST00000360264 SH2B1Q9NRF2 756 aaPredicted RBP11.31□□□□□ -0.6
CUX1-203ENST00000360264 DAPK1P53355 1430 aa11.31□□□□□ -0.6
CUX1-203ENST00000360264 CASKIN1Q8WXD9 1431 aa11.31□□□□□ -0.6
CUX1-203ENST00000360264 TTC21AQ8NDW8 1320 aa11.31□□□□□ -0.6
CUX1-203ENST00000360264 AIDAQ96BJ3 306 aa11.31□□□□□ -0.6
CUX1-203ENST00000360264 PLEKHH1Q9ULM0 1364 aa11.31□□□□□ -0.6
CUX1-203ENST00000360264 STXBP4Q6ZWJ1 553 aa11.31□□□□□ -0.6
CUX1-203ENST00000360264 BLOC1S2Q6QNY1 142 aa11.31□□□□□ -0.6
CUX1-203ENST00000360264 CFAP65Q6ZU64 1925 aaKnown RBP11.31□□□□□ -0.6
CUX1-203ENST00000360264 NOB1Q9ULX3 412 aaKnown RBP11.31□□□□□ -0.6
CUX1-203ENST00000360264 VSIG10Q8N0Z9 540 aa11.31□□□□□ -0.6
CUX1-203ENST00000360264 RTEL1-TNFRSF6BF6WH68 1400 aa11.31□□□□□ -0.6
CUX1-203ENST00000360264 GOLGA6L10A0A0M3HER8 536 aa11.31□□□□□ -0.6
CUX1-203ENST00000360264 GCOM1H8Y6P7 765 aaPredicted RBP11.31□□□□□ -0.6
CUX1-203ENST00000360264 MYZAPP0CAP1 466 aa11.31□□□□□ -0.6
CUX1-203ENST00000360264 TMEM87AQ8NBN3 555 aa11.31□□□□□ -0.6
CUX1-203ENST00000360264 HMGB1P09429 215 aaKnown RBP11.3□□□□□ -0.6
CUX1-203ENST00000360264 ZPR1O75312 459 aa11.3□□□□□ -0.6
CUX1-203ENST00000360264 CCDC12Q8WUD4 166 aaPredicted RBP11.3□□□□□ -0.6
CUX1-203ENST00000360264 USP5P45974 858 aa11.3□□□□□ -0.6
CUX1-203ENST00000360264 CDK19Q9BWU1 502 aa11.3□□□□□ -0.6
CUX1-203ENST00000360264 RAI14Q9P0K7 980 aa11.3□□□□□ -0.6
CUX1-203ENST00000360264 NFKBIBQ15653 356 aa11.3□□□□□ -0.6
CUX1-203ENST00000360264 ZSCAN29Q8IWY8 852 aaPredicted RBP11.3□□□□□ -0.6
CUX1-203ENST00000360264 PRDM11Q9NQV5 511 aa11.3□□□□□ -0.6
CUX1-203ENST00000360264 A0A087WZG4 1122 aa11.3□□□□□ -0.6
CUX1-203ENST00000360264 IFIT1P09914 478 aaKnown RBP11.3□□□□□ -0.6
CUX1-203ENST00000360264 NF2P35240 595 aa11.3□□□□□ -0.6
CUX1-203ENST00000360264 TRAK2O60296 914 aa11.3□□□□□ -0.6
CUX1-203ENST00000360264 BTBD11A6QL63 1104 aa11.3□□□□□ -0.6
CUX1-203ENST00000360264 PYM1Q9BRP8 204 aaKnown RBP11.3□□□□□ -0.6
CUX1-203ENST00000360264 CEBPZQ03701 1054 aaKnown RBP11.29□□□□□ -0.6
CUX1-203ENST00000360264 PRAM1Q96QH2 718 aa11.29□□□□□ -0.6
CUX1-203ENST00000360264 TMEM266Q2M3C6 531 aa11.29□□□□□ -0.6
CUX1-203ENST00000360264 IL27Q8NEV9 243 aa11.29□□□□□ -0.6
CUX1-203ENST00000360264 UPF3BQ9BZI7 483 aaKnown RBP11.29□□□□□ -0.6
CUX1-203ENST00000360264 RNF41Q9H4P4 317 aaPredicted RBP11.29□□□□□ -0.6
CUX1-203ENST00000360264 PPP2R1AP30153 589 aa11.29□□□□□ -0.6
CUX1-203ENST00000360264 TAOK3Q9H2K8 898 aa11.29□□□□□ -0.6
CUX1-203ENST00000360264 KIF20AO95235 890 aa11.29□□□□□ -0.6
CUX1-203ENST00000360264 SSBP05455 408 aaKnown RBP eCLIP11.29□□□□□ -0.6
CUX1-203ENST00000360264 ANKRD30BQ9BXX2 1392 aa11.29□□□□□ -0.6
CUX1-203ENST00000360264 RAB11FIP3O75154 756 aa11.29□□□□□ -0.6
CUX1-203ENST00000360264 C9orf84Q5VXU9 1444 aa11.29□□□□□ -0.6
CUX1-203ENST00000360264 FCHSD2O94868 740 aa11.28□□□□□ -0.6
CUX1-203ENST00000360264 DDX12PQ92771 950 aa11.28□□□□□ -0.6
CUX1-203ENST00000360264 FGD5Q6ZNL6 1462 aa11.28□□□□□ -0.6
CUX1-203ENST00000360264 SETD1BQ9UPS6 1966 aaKnown RBP11.28□□□□□ -0.6
CUX1-203ENST00000360264 FKBP4Q02790 459 aaKnown RBP eCLIP11.28□□□□□ -0.6
CUX1-203ENST00000360264 EHBP1L1Q8N3D4 1523 aa11.28□□□□□ -0.6
CUX1-203ENST00000360264 KIF5BP33176 963 aa11.28□□□□□ -0.6
CUX1-203ENST00000360264 PDRG1Q9NUG6 133 aa11.28□□□□□ -0.6
CUX1-203ENST00000360264 K7ELQ4 463 aaPredicted RBP11.28□□□□□ -0.6
CUX1-203ENST00000360264 PRPF40AO75400 957 aaKnown RBP11.28□□□□□ -0.6
CUX1-203ENST00000360264 GBP3Q9H0R5 595 aa11.28□□□□□ -0.6
CUX1-203ENST00000360264 TAX1BP1Q86VP1 789 aa11.28□□□□□ -0.6
CUX1-203ENST00000360264 FAM177BA6PVY3 158 aa11.28□□□□□ -0.6
CUX1-203ENST00000360264 MVPQ14764 893 aaKnown RBP11.28□□□□□ -0.6
CUX1-203ENST00000360264 CRACR2BQ8N4Y2 399 aaPredicted RBP11.28□□□□□ -0.6
CUX1-203ENST00000360264 DYDC1Q8WWB3 177 aa11.28□□□□□ -0.6
CUX1-203ENST00000360264 LRRFIP2Q9Y608 721 aaKnown RBP11.28□□□□□ -0.6
CUX1-203ENST00000360264 DZIP1Q86YF9 867 aaKnown RBP11.28□□□□□ -0.6
CUX1-203ENST00000360264 FKBP15Q5T1M5 1219 aa11.28□□□□□ -0.6
CUX1-203ENST00000360264 FAM107BQ9H098 131 aa11.27□□□□□ -0.6
CUX1-203ENST00000360264 HOMER2Q9NSB8 354 aa11.27□□□□□ -0.6
CUX1-203ENST00000360264 MAP3K12Q12852 859 aa11.27□□□□□ -0.6
CUX1-203ENST00000360264 LRRC45Q96CN5 670 aa11.27□□□□□ -0.6
CUX1-203ENST00000360264 POLA1P09884 1462 aaPredicted RBP11.27□□□□□ -0.6
CUX1-203ENST00000360264 ALS2CR12Q96Q35 445 aa11.27□□□□□ -0.61
CUX1-203ENST00000360264 BBXQ8WY36 941 aaPredicted RBP11.27□□□□□ -0.61
CUX1-203ENST00000360264 SCAND2PQ9GZW5 306 aaPredicted RBP11.27□□□□□ -0.61
CUX1-203ENST00000360264 ANKRD18BA2A2Z9 1011 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms