RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 NF2P35240 595 aa12.01□□□□□ -0.49
CLIP1-202ENST00000358808 TNIP1Q15025 636 aa12.01□□□□□ -0.49
CLIP1-202ENST00000358808 PLCD3Q8N3E9 789 aa12.01□□□□□ -0.49
CLIP1-202ENST00000358808 DDX54Q8TDD1 881 aaKnown RBP12.01□□□□□ -0.49
CLIP1-202ENST00000358808 ZNF428Q96B54 188 aa12.01□□□□□ -0.49
CLIP1-202ENST00000358808 C22orf23Q9BZE7 217 aa12.01□□□□□ -0.49
CLIP1-202ENST00000358808 CABP4P57796 275 aa12□□□□□ -0.49
CLIP1-202ENST00000358808 ANKLE2Q86XL3 938 aa12□□□□□ -0.49
CLIP1-202ENST00000358808 PIBF1Q8WXW3 757 aa12□□□□□ -0.49
CLIP1-202ENST00000358808 EPB41L2O43491 1005 aaKnown RBP12□□□□□ -0.49
CLIP1-202ENST00000358808 WDR78Q5VTH9 848 aa12□□□□□ -0.49
CLIP1-202ENST00000358808 TSPY26PQ9H489 355 aa12□□□□□ -0.49
CLIP1-202ENST00000358808 BICDL1Q6ZP65 573 aa12□□□□□ -0.49
CLIP1-202ENST00000358808 CA8P35219 290 aa11.99□□□□□ -0.49
CLIP1-202ENST00000358808 SPC24Q8NBT2 197 aa11.99□□□□□ -0.49
CLIP1-202ENST00000358808 TAF4BQ92750 862 aa11.99□□□□□ -0.49
CLIP1-202ENST00000358808 ASXL2Q76L83 1435 aa11.99□□□□□ -0.49
CLIP1-202ENST00000358808 RRBP1Q9P2E9 1410 aaKnown RBP11.99□□□□□ -0.49
CLIP1-202ENST00000358808 CCDC66A2RUB6 948 aa11.99□□□□□ -0.49
CLIP1-202ENST00000358808 NASPP49321 788 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-202ENST00000358808 CETN2P41208 172 aa11.99□□□□□ -0.49
CLIP1-202ENST00000358808 LRRFIP2Q9Y608 721 aaKnown RBP11.99□□□□□ -0.49
CLIP1-202ENST00000358808 NFKBIBQ15653 356 aa11.99□□□□□ -0.49
CLIP1-202ENST00000358808 HOMER2Q9NSB8 354 aa11.99□□□□□ -0.49
CLIP1-202ENST00000358808 CCDC141Q6ZP82 1450 aa11.99□□□□□ -0.49
CLIP1-202ENST00000358808 TAF3Q5VWG9 929 aa11.99□□□□□ -0.49
CLIP1-202ENST00000358808 FAM177A1Q8N128 213 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-202ENST00000358808 GAS2L2Q8NHY3 880 aa11.99□□□□□ -0.49
CLIP1-202ENST00000358808 PDCP20941 246 aa11.98□□□□□ -0.49
CLIP1-202ENST00000358808 RAI14Q9P0K7 980 aa11.98□□□□□ -0.49
CLIP1-202ENST00000358808 PABPN1LA6NDY0 278 aaKnown RBP11.98□□□□□ -0.49
CLIP1-202ENST00000358808 GNAI3P08754 354 aa11.98□□□□□ -0.49
CLIP1-202ENST00000358808 FANCAO15360 1455 aa11.98□□□□□ -0.49
CLIP1-202ENST00000358808 IQCEQ6IPM2 695 aa11.98□□□□□ -0.49
CLIP1-202ENST00000358808 SIL1Q9H173 461 aa11.98□□□□□ -0.49
CLIP1-202ENST00000358808 FIBPO43427 364 aa11.98□□□□□ -0.49
CLIP1-202ENST00000358808 TDO2P48775 406 aa11.98□□□□□ -0.49
CLIP1-202ENST00000358808 ZSCAN25Q6NSZ9 544 aa11.98□□□□□ -0.49
CLIP1-202ENST00000358808 CEP63Q96MT8 703 aa11.97□□□□□ -0.49
CLIP1-202ENST00000358808 GOLGA6L10A0A0M3HER8 536 aa11.97□□□□□ -0.49
CLIP1-202ENST00000358808 ME1P48163 572 aa11.97□□□□□ -0.49
CLIP1-202ENST00000358808 DYDC1Q8WWB3 177 aa11.97□□□□□ -0.49
CLIP1-202ENST00000358808 PRAM1Q96QH2 718 aa11.97□□□□□ -0.49
CLIP1-202ENST00000358808 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.97□□□□□ -0.49
CLIP1-202ENST00000358808 ERLIN1O75477 346 aa11.97□□□□□ -0.49
CLIP1-202ENST00000358808 UBAC1Q9BSL1 405 aa11.97□□□□□ -0.49
CLIP1-202ENST00000358808 WDR7Q9Y4E6 1490 aa11.96□□□□□ -0.49
CLIP1-202ENST00000358808 CAVIN1Q6NZI2 390 aaKnown RBP11.96□□□□□ -0.49
CLIP1-202ENST00000358808 SLC26A8Q96RN1 970 aa11.96□□□□□ -0.49
CLIP1-202ENST00000358808 PPP1R12BO60237 982 aaPredicted RBP11.96□□□□□ -0.49
CLIP1-202ENST00000358808 SPINK5Q9NQ38 1064 aaPredicted RBP11.96□□□□□ -0.49
CLIP1-202ENST00000358808 DAPK1P53355 1430 aa11.96□□□□□ -0.49
CLIP1-202ENST00000358808 KIAA0556O60303 1618 aa11.96□□□□□ -0.5
CLIP1-202ENST00000358808 KIAA1328Q86T90 577 aa11.96□□□□□ -0.5
CLIP1-202ENST00000358808 CBFA2T2O43439 604 aa11.96□□□□□ -0.5
CLIP1-202ENST00000358808 FKBP4Q02790 459 aaKnown RBP eCLIP11.96□□□□□ -0.5
CLIP1-202ENST00000358808 CCDC113Q9H0I3 377 aa11.95□□□□□ -0.5
CLIP1-202ENST00000358808 EIF3JO75822 258 aaKnown RBP11.95□□□□□ -0.5
CLIP1-202ENST00000358808 NEK4P51957 841 aa11.95□□□□□ -0.5
CLIP1-202ENST00000358808 EIF5P55010 431 aaKnown RBP11.95□□□□□ -0.5
CLIP1-202ENST00000358808 MAP2K1Q02750 393 aaPredicted RBP11.95□□□□□ -0.5
CLIP1-202ENST00000358808 CEP57L1Q8IYX8 460 aa11.95□□□□□ -0.5
CLIP1-202ENST00000358808 CAMSAP2Q08AD1 1489 aa11.95□□□□□ -0.5
CLIP1-202ENST00000358808 CRACR2BQ8N4Y2 399 aaPredicted RBP11.95□□□□□ -0.5
CLIP1-202ENST00000358808 PPM1EQ8WY54 764 aa11.95□□□□□ -0.5
CLIP1-202ENST00000358808 SPG7Q9UQ90 795 aa11.95□□□□□ -0.5
CLIP1-202ENST00000358808 CCDC150Q8NCX0 1101 aa11.95□□□□□ -0.5
CLIP1-202ENST00000358808 DDX23Q9BUQ8 820 aaKnown RBP11.94□□□□□ -0.5
CLIP1-202ENST00000358808 LRRCC1Q9C099 1032 aa11.94□□□□□ -0.5
CLIP1-202ENST00000358808 MYL6BP14649 208 aa11.94□□□□□ -0.5
CLIP1-202ENST00000358808 UGGT2Q9NYU1 1516 aa11.94□□□□□ -0.5
CLIP1-202ENST00000358808 PRPF40AO75400 957 aaKnown RBP11.94□□□□□ -0.5
CLIP1-202ENST00000358808 PUS7Q96PZ0 661 aaKnown RBP11.94□□□□□ -0.5
CLIP1-202ENST00000358808 MAP4K4O95819 1239 aaPredicted RBP11.94□□□□□ -0.5
CLIP1-202ENST00000358808 LIG1P18858 919 aa11.94□□□□□ -0.5
CLIP1-202ENST00000358808 TTC16Q8NEE8 873 aa11.94□□□□□ -0.5
CLIP1-202ENST00000358808 TNMDQ9H2S6 317 aa11.94□□□□□ -0.5
CLIP1-202ENST00000358808 BRPF3Q9ULD4 1205 aa11.94□□□□□ -0.5
CLIP1-202ENST00000358808 CYP46A1Q9Y6A2 500 aa11.94□□□□□ -0.5
CLIP1-202ENST00000358808 CDKL5O76039 1030 aa11.93□□□□□ -0.5
CLIP1-202ENST00000358808 CTNNBL1Q8WYA6 563 aaPredicted RBP11.93□□□□□ -0.5
CLIP1-202ENST00000358808 FERMT2Q96AC1 680 aa11.93□□□□□ -0.5
CLIP1-202ENST00000358808 SLC52A1Q9NWF4 448 aa11.93□□□□□ -0.5
CLIP1-202ENST00000358808 LRP2BPQ9P2M1 347 aa11.93□□□□□ -0.5
CLIP1-202ENST00000358808 DHX8Q14562 1220 aaKnown RBP11.93□□□□□ -0.5
CLIP1-202ENST00000358808 CFAP70Q5T0N1 1121 aa11.93□□□□□ -0.5
CLIP1-202ENST00000358808 UBA5Q9GZZ9 404 aa11.93□□□□□ -0.5
CLIP1-202ENST00000358808 SEC63Q9UGP8 760 aaKnown RBP11.93□□□□□ -0.5
CLIP1-202ENST00000358808 MBD3O95983 291 aa11.93□□□□□ -0.5
CLIP1-202ENST00000358808 PANK1Q8TE04 598 aa11.93□□□□□ -0.5
CLIP1-202ENST00000358808 ANKRD1Q15327 319 aa11.92□□□□□ -0.5
CLIP1-202ENST00000358808 CDK19Q9BWU1 502 aa11.92□□□□□ -0.5
CLIP1-202ENST00000358808 PRDM11Q9NQV5 511 aa11.92□□□□□ -0.5
CLIP1-202ENST00000358808 IGHMBP2P38935 993 aaKnown RBP11.92□□□□□ -0.5
CLIP1-202ENST00000358808 MRPS9P82933 396 aaKnown RBP11.92□□□□□ -0.5
CLIP1-202ENST00000358808 ZNF397Q8NF99 534 aaPredicted RBP11.92□□□□□ -0.5
CLIP1-202ENST00000358808 ABCA5Q8WWZ7 1642 aa11.92□□□□□ -0.5
CLIP1-202ENST00000358808 SSX2IPQ9Y2D8 614 aa11.92□□□□□ -0.5
CLIP1-202ENST00000358808 NUP160Q12769 1436 aa11.92□□□□□ -0.5
CLIP1-202ENST00000358808 GSTTP1A0A1W2PQM5 241 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms