RNA–Protein interactions for RNA: ENST00000358207.9

SMARCAL1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SMARCAL1, Length 3,056 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1-202ENST00000358207 MCM4P33991 863 aa11.75□□□□□ -0.53
SMARCAL1-202ENST00000358207 TMF1P82094 1093 aa11.75□□□□□ -0.53
SMARCAL1-202ENST00000358207 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.75□□□□□ -0.53
SMARCAL1-202ENST00000358207 LRRC37A3O60309 1634 aa11.74□□□□□ -0.53
SMARCAL1-202ENST00000358207 PLIN1O60240 522 aa11.74□□□□□ -0.53
SMARCAL1-202ENST00000358207 KDM2BQ8NHM5 1336 aa11.74□□□□□ -0.53
SMARCAL1-202ENST00000358207 NUTM2FA1L443 756 aa11.74□□□□□ -0.53
SMARCAL1-202ENST00000358207 GAS2L3Q86XJ1 694 aa11.74□□□□□ -0.53
SMARCAL1-202ENST00000358207 RGS22Q8NE09 1264 aa11.74□□□□□ -0.53
SMARCAL1-202ENST00000358207 GTPBP4Q9BZE4 634 aaKnown RBP11.74□□□□□ -0.53
SMARCAL1-202ENST00000358207 TRAK2O60296 914 aa11.73□□□□□ -0.53
SMARCAL1-202ENST00000358207 MTERF4Q7Z6M4 381 aaKnown RBP11.73□□□□□ -0.53
SMARCAL1-202ENST00000358207 QTRT2Q9H974 415 aaKnown RBP11.73□□□□□ -0.53
SMARCAL1-202ENST00000358207 PHF8Q9UPP1 1060 aa11.73□□□□□ -0.53
SMARCAL1-202ENST00000358207 MINK1Q8N4C8 1332 aaPredicted RBP11.73□□□□□ -0.53
SMARCAL1-202ENST00000358207 UNC5CLQ8IV45 518 aa11.73□□□□□ -0.53
SMARCAL1-202ENST00000358207 CRBNQ96SW2 442 aa11.73□□□□□ -0.53
SMARCAL1-202ENST00000358207 E9PSI1 815 aa11.72□□□□□ -0.53
SMARCAL1-202ENST00000358207 LETM1O95202 739 aaPredicted RBP11.72□□□□□ -0.53
SMARCAL1-202ENST00000358207 SAMD1Q6SPF0 538 aaPredicted RBP11.72□□□□□ -0.53
SMARCAL1-202ENST00000358207 ZSCAN30Q86W11 494 aa11.72□□□□□ -0.53
SMARCAL1-202ENST00000358207 USP21Q9UK80 565 aa11.72□□□□□ -0.53
SMARCAL1-202ENST00000358207 KTN1Q86UP2 1357 aaKnown RBP11.72□□□□□ -0.53
SMARCAL1-202ENST00000358207 RNF216Q9NWF9 866 aaPredicted RBP11.71□□□□□ -0.53
SMARCAL1-202ENST00000358207 PARD3Q8TEW0 1356 aa11.71□□□□□ -0.53
SMARCAL1-202ENST00000358207 PLEKHG3A1L390 1219 aa11.71□□□□□ -0.53
SMARCAL1-202ENST00000358207 WAPLQ7Z5K2 1190 aa11.71□□□□□ -0.53
SMARCAL1-202ENST00000358207 CABP2Q9NPB3 220 aa11.71□□□□□ -0.53
SMARCAL1-202ENST00000358207 PRR36Q9H6K5 1346 aa11.71□□□□□ -0.54
SMARCAL1-202ENST00000358207 GJD4Q96KN9 370 aaPredicted RBP11.71□□□□□ -0.54
SMARCAL1-202ENST00000358207 CASZ1Q86V15 1759 aa11.7□□□□□ -0.54
SMARCAL1-202ENST00000358207 DYNC1I1O14576 645 aa11.7□□□□□ -0.54
SMARCAL1-202ENST00000358207 KRT28Q7Z3Y7 464 aa11.7□□□□□ -0.54
SMARCAL1-202ENST00000358207 CERS3Q8IU89 383 aa11.7□□□□□ -0.54
SMARCAL1-202ENST00000358207 CAMTA1Q9Y6Y1 1673 aa11.7□□□□□ -0.54
SMARCAL1-202ENST00000358207 WASLO00401 505 aaPredicted RBP11.7□□□□□ -0.54
SMARCAL1-202ENST00000358207 CBX1P83916 185 aa11.7□□□□□ -0.54
SMARCAL1-202ENST00000358207 SLC12A5Q9H2X9 1139 aa11.7□□□□□ -0.54
SMARCAL1-202ENST00000358207 NFAT5O94916 1531 aa11.7□□□□□ -0.54
SMARCAL1-202ENST00000358207 SEC24BO95487 1268 aa11.69□□□□□ -0.54
SMARCAL1-202ENST00000358207 ESCO1Q5FWF5 840 aa11.69□□□□□ -0.54
SMARCAL1-202ENST00000358207 CGNQ9P2M7 1197 aaKnown RBP11.69□□□□□ -0.54
SMARCAL1-202ENST00000358207 DNTTIP2Q5QJE6 756 aaKnown RBP11.68□□□□□ -0.54
SMARCAL1-202ENST00000358207 PNISRQ8TF01 805 aaKnown RBP11.68□□□□□ -0.54
SMARCAL1-202ENST00000358207 PRAM1Q96QH2 718 aa11.68□□□□□ -0.54
SMARCAL1-202ENST00000358207 NHSQ6T4R5 1651 aa11.68□□□□□ -0.54
SMARCAL1-202ENST00000358207 ANKRD26Q9UPS8 1709 aa11.68□□□□□ -0.54
SMARCAL1-202ENST00000358207 SRPK2P78362 688 aaKnown RBP11.68□□□□□ -0.54
SMARCAL1-202ENST00000358207 C8orf37Q96NL8 207 aa11.68□□□□□ -0.54
SMARCAL1-202ENST00000358207 IRX3P78415 501 aaPredicted RBP11.67□□□□□ -0.54
SMARCAL1-202ENST00000358207 DDX17Q92841 729 aaKnown RBP11.67□□□□□ -0.54
SMARCAL1-202ENST00000358207 KCNG1Q9UIX4 513 aa11.67□□□□□ -0.54
SMARCAL1-202ENST00000358207 IRX5P78411 483 aaPredicted RBP11.67□□□□□ -0.54
SMARCAL1-202ENST00000358207 JARID2Q92833 1246 aaPredicted RBP11.66□□□□□ -0.54
SMARCAL1-202ENST00000358207 PPP1R9BQ96SB3 815 aa11.66□□□□□ -0.54
SMARCAL1-202ENST00000358207 CDK11BP21127 795 aaKnown RBP11.66□□□□□ -0.54
SMARCAL1-202ENST00000358207 XPCQ01831 940 aaPredicted RBP11.66□□□□□ -0.54
SMARCAL1-202ENST00000358207 BECN1Q14457 450 aa11.66□□□□□ -0.54
SMARCAL1-202ENST00000358207 ATP2B3Q16720 1220 aa11.66□□□□□ -0.54
SMARCAL1-202ENST00000358207 PUS7Q96PZ0 661 aaKnown RBP11.66□□□□□ -0.54
SMARCAL1-202ENST00000358207 IGSF3O75054 1194 aa11.66□□□□□ -0.54
SMARCAL1-202ENST00000358207 C20orf194Q5TEA3 1177 aa11.66□□□□□ -0.54
SMARCAL1-202ENST00000358207 KNSTRNQ9Y448 316 aa11.66□□□□□ -0.54
SMARCAL1-202ENST00000358207 LTN1O94822 1766 aa11.65□□□□□ -0.54
SMARCAL1-202ENST00000358207 MSNP26038 577 aaKnown RBP11.65□□□□□ -0.54
SMARCAL1-202ENST00000358207 ISY1Q9ULR0 285 aaKnown RBP11.65□□□□□ -0.54
SMARCAL1-202ENST00000358207 PAPPAQ13219 1627 aa11.65□□□□□ -0.54
SMARCAL1-202ENST00000358207 CPSF1Q10570 1443 aaKnown RBP11.65□□□□□ -0.54
SMARCAL1-202ENST00000358207 SPRYD3Q8NCJ5 442 aa11.65□□□□□ -0.54
SMARCAL1-202ENST00000358207 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.65□□□□□ -0.54
SMARCAL1-202ENST00000358207 SPATA31A5Q5VU36 1347 aa11.65□□□□□ -0.55
SMARCAL1-202ENST00000358207 SPATA31A7Q8IWB4 1347 aa11.65□□□□□ -0.55
SMARCAL1-202ENST00000358207 USP6P35125 1406 aa11.64□□□□□ -0.55
SMARCAL1-202ENST00000358207 RGPD5Q99666 1765 aa11.64□□□□□ -0.55
SMARCAL1-202ENST00000358207 NUTM2BA6NNL0 878 aaPredicted RBP11.64□□□□□ -0.55
SMARCAL1-202ENST00000358207 NUTM2EB1AL46 878 aaPredicted RBP11.64□□□□□ -0.55
SMARCAL1-202ENST00000358207 CENPQQ7L2Z9 268 aaPredicted RBP11.64□□□□□ -0.55
SMARCAL1-202ENST00000358207 NUTM2AQ8IVF1 878 aaPredicted RBP11.64□□□□□ -0.55
SMARCAL1-202ENST00000358207 TBC1D2Q9BYX2 928 aa11.64□□□□□ -0.55
SMARCAL1-202ENST00000358207 PER1O15534 1290 aaPredicted RBP11.63□□□□□ -0.55
SMARCAL1-202ENST00000358207 CCDC173Q0VFZ6 552 aa11.63□□□□□ -0.55
SMARCAL1-202ENST00000358207 TAF3Q5VWG9 929 aa11.63□□□□□ -0.55
SMARCAL1-202ENST00000358207 USP31Q70CQ4 1352 aa11.63□□□□□ -0.55
SMARCAL1-202ENST00000358207 COL5A2P05997 1499 aaPredicted RBP11.63□□□□□ -0.55
SMARCAL1-202ENST00000358207 BARGINQ6ZT62 677 aa11.63□□□□□ -0.55
SMARCAL1-202ENST00000358207 FOXO3O43524 673 aa11.62□□□□□ -0.55
SMARCAL1-202ENST00000358207 ZNF710Q8N1W2 664 aa11.62□□□□□ -0.55
SMARCAL1-202ENST00000358207 CDCA7LQ96GN5 454 aa11.62□□□□□ -0.55
SMARCAL1-202ENST00000358207 SHANK3Q9BYB0 1731 aa11.62□□□□□ -0.55
SMARCAL1-202ENST00000358207 AATKQ6ZMQ8 1374 aa11.62□□□□□ -0.55
SMARCAL1-202ENST00000358207 ZNF500O60304 480 aaPredicted RBP11.62□□□□□ -0.55
SMARCAL1-202ENST00000358207 CARD14Q9BXL6 1004 aa11.62□□□□□ -0.55
SMARCAL1-202ENST00000358207 FBLN1P23142 703 aa11.61□□□□□ -0.55
SMARCAL1-202ENST00000358207 TSC1Q92574 1164 aa11.61□□□□□ -0.55
SMARCAL1-202ENST00000358207 KIF20BQ96Q89 1820 aa11.61□□□□□ -0.55
SMARCAL1-202ENST00000358207 THRAP3Q9Y2W1 955 aaKnown RBP11.61□□□□□ -0.55
SMARCAL1-202ENST00000358207 NINLQ9Y2I6 1382 aa11.6□□□□□ -0.55
SMARCAL1-202ENST00000358207 CD163L1Q9NR16 1453 aa11.6□□□□□ -0.55
SMARCAL1-202ENST00000358207 ZBTB9Q96C00 473 aa11.6□□□□□ -0.55
SMARCAL1-202ENST00000358207 CHMP4CQ96CF2 233 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms